RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254781125|ref|YP_003065538.1| hypothetical protein CLIBASIA_05135 [Candidatus Liberibacter asiaticus str. psy62] (59 letters) >gnl|CDD|37837 KOG2626, KOG2626, KOG2626, Histone H3 (Lys4) methyltransferase complex, subunit CPS60/ASH2/BRE2 [Chromatin structure and dynamics, Transcription]. Length = 544 Score = 26.2 bits (57), Expect = 2.2 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 2/39 (5%) Query: 11 LNDPNRYRLSAKDPH--YNVIFRDEVPSFIYETLNIPAD 47 D RY L+ DP ++ F +P F+Y L P D Sbjct: 253 SKDGYRYILAEPDPSAPEDIKFAKPIPGFLYRALLSPMD 291 >gnl|CDD|176949 CHL00004, psbD, photosystem II protein D2. Length = 353 Score = 24.8 bits (54), Expect = 4.8 Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 1/25 (4%) Query: 11 LNDPNRYRLSAKD-PHYNVIFRDEV 34 LN+ R ++A+D PH N+IF +EV Sbjct: 322 LNEGIRAWMAAQDQPHENLIFPEEV 346 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.326 0.141 0.426 Gapped Lambda K H 0.267 0.0737 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 782,271 Number of extensions: 31026 Number of successful extensions: 101 Number of sequences better than 10.0: 1 Number of HSP's gapped: 101 Number of HSP's successfully gapped: 4 Length of query: 59 Length of database: 6,263,737 Length adjustment: 31 Effective length of query: 28 Effective length of database: 5,593,858 Effective search space: 156628024 Effective search space used: 156628024 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 51 (23.4 bits)