BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781125|ref|YP_003065538.1| hypothetical protein
CLIBASIA_05135 [Candidatus Liberibacter asiaticus str. psy62]
         (59 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781125|ref|YP_003065538.1| hypothetical protein CLIBASIA_05135 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 59

 Score =  121 bits (304), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 59/59 (100%), Positives = 59/59 (100%)

Query: 1  MSPILEYIRCLNDPNRYRLSAKDPHYNVIFRDEVPSFIYETLNIPADKRKMAVIRSYML 59
          MSPILEYIRCLNDPNRYRLSAKDPHYNVIFRDEVPSFIYETLNIPADKRKMAVIRSYML
Sbjct: 1  MSPILEYIRCLNDPNRYRLSAKDPHYNVIFRDEVPSFIYETLNIPADKRKMAVIRSYML 59


>gi|254781189|ref|YP_003065602.1| hypothetical protein CLIBASIA_05480 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 252

 Score = 32.0 bits (71), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 6/48 (12%)

Query: 6   EYIRCLNDPNRYRL--SAKDPHYNVIFRDEVPSFIYETLNIPADKRKM 51
           E   CL   +RY +  +   P Y VI    VP FI++ L+IP +KR++
Sbjct: 109 EACACLTQYDRYEVIYNFGGPMYGVI----VPDFIHDLLDIPEEKRRL 152


>gi|254781026|ref|YP_003065439.1| hypothetical protein CLIBASIA_04640 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 186

 Score = 26.6 bits (57), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 25 HYNVIFRDEVPSFIYETLN 43
          H  V+F DE+P F  +TLN
Sbjct: 81 HNGVLFLDEIPEFSPQTLN 99


>gi|254781208|ref|YP_003065621.1| hypothetical protein CLIBASIA_05575 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 578

 Score = 23.9 bits (50), Expect = 0.49,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 18/40 (45%)

Query: 17 YRLSAKDPHYNVIFRDEVPSFIYETLNIPADKRKMAVIRS 56
          YR    DP  N +F   +P   Y  L     K ++ V+RS
Sbjct: 57 YRDCRLDPRSNRVFSFSIPDGGYALLVFGDKKLQIVVVRS 96


>gi|254781203|ref|YP_003065616.1| hypothetical protein CLIBASIA_05550 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 478

 Score = 22.7 bits (47), Expect = 1.3,   Method: Composition-based stats.
 Identities = 8/14 (57%), Positives = 9/14 (64%)

Query: 12 NDPNRYRLSAKDPH 25
          + PN YR S  DPH
Sbjct: 59 DQPNYYRGSRTDPH 72


>gi|254780204|ref|YP_003064617.1| hypothetical protein CLIBASIA_00445 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 180

 Score = 21.9 bits (45), Expect = 1.9,   Method: Composition-based stats.
 Identities = 8/14 (57%), Positives = 9/14 (64%)

Query: 4   ILEYIRCLNDPNRY 17
           I E+  CL  PNRY
Sbjct: 141 ISEFAACLEHPNRY 154


>gi|254780388|ref|YP_003064801.1| hypothetical protein CLIBASIA_01365 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 458

 Score = 20.4 bits (41), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 14  PNRYRLSAKDPHYNVIFRDEVPSFIYE 40
           PN +  +      N IFRD + + I+E
Sbjct: 425 PNSFFEANSTHELNKIFRDRIGNEIFE 451


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.326    0.141    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,598
Number of Sequences: 1233
Number of extensions: 1230
Number of successful extensions: 9
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 59
length of database: 328,796
effective HSP length: 31
effective length of query: 28
effective length of database: 290,573
effective search space:  8136044
effective search space used:  8136044
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 31 (16.5 bits)