Query gi|254781126|ref|YP_003065539.1| hypothetical protein CLIBASIA_05140 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 85 No_of_seqs 2 out of 4 Neff 1.2 Searched_HMMs 33803 Date Wed Jun 1 21:50:16 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781126.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2guk_A Hypothetical protein P 19.2 70 0.0021 14.2 2.1 40 1-47 65-105 (120) 2 >1af7_A Chemotaxis receptor me 10.6 85 0.0025 13.7 0.6 17 21-37 7-23 (37) 3 >2vla_A Bpuji, restriction end 10.5 1.2E+02 0.0037 12.8 2.4 21 25-45 108-128 (132) 4 >3hi0_A Putative exopolyphosph 9.8 1.3E+02 0.0037 12.7 1.2 19 59-77 27-45 (55) 5 >3hf5_A 4-methylmuconolactone 9.7 1.3E+02 0.0039 12.6 1.7 16 27-42 90-105 (116) 6 >2jd6_0 Ferritin homolog, ferr 9.5 1.2E+02 0.0036 12.8 1.1 15 31-45 15-29 (101) 7 >3dp7_A SAM-dependent methyltr 8.0 1.6E+02 0.0046 12.2 2.6 21 18-38 42-62 (67) 8 >5csm_A Chorismate mutase; cho 8.0 1.6E+02 0.0046 12.2 2.2 17 5-21 145-161 (256) 9 >1eum_A Ferritin 1; ECFTNA, me 7.1 1.7E+02 0.0051 12.0 1.1 14 31-44 15-28 (92) 10 >3kxu_A Ferritin; iron storage 6.8 1.8E+02 0.0053 11.9 1.1 14 31-44 15-28 (108) No 1 >>2guk_A Hypothetical protein PG1857; alpha-beta, alpha-helical bundle, structural genomics, PSI, protein structure initiative; 1.91A {Porphyromonas gingivalis W83} (A:) Probab=19.20 E-value=70 Score=14.18 Aligned_cols=40 Identities=25% Similarity=0.517 Sum_probs=28.1 Q ss_pred CCEEHHHHHHHHHHHH-HHHHHHHHCCHHHHHHHHHHHHHHHHHCCCC Q ss_conf 9420114899999999-9977665248367899998787677516867 Q gi|254781126|r 1 MNIFVRDISCLRALVF-VITRGVARLPKDQKKAFFRHEKKVADHLNYN 47 (85) Q Consensus 1 mnifvrdisclralvf-vITR~~~~L~~~~KKAFF~HEKKV~~~LNYN 47 (85) .|+|--+-.|+.++-- +..|-|+.|+..|. | -...-|.|. T Consensus 65 vNlFFG~~~Ci~~ir~~i~~rpL~~lTpEED--F-----iLG~mLGYD 105 (120) T 2guk_A 65 TNLFFGCKECXEAIRLFVSGRSLNSLTPEED--F-----IIGAXLGYD 105 (120) T ss_dssp EEEEEECHHHHHHHHHHHTTSCGGGCCHHHH--H-----HHHHHTTCC T ss_pred EEEEECCHHHHHHHHHHHCCCCHHHCCHHHH--H-----HHHHHHCCC T ss_conf 7887487799999999835886232791988--9-----998886553 No 2 >>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} (A:156-192) Probab=10.60 E-value=85 Score=13.70 Aligned_cols=17 Identities=18% Similarity=0.331 Sum_probs=13.5 Q ss_pred HHHHCCHHHHHHHHHHH Q ss_conf 66524836789999878 Q gi|254781126|r 21 GVARLPKDQKKAFFRHE 37 (85) Q Consensus 21 ~~~~L~~~~KKAFF~HE 37 (85) .+..||.++++.||-.- T Consensus 7 ~v~~l~~~~~krfFlrG 23 (37) T 1af7_A 7 ELKTLSPQQLQRYFMRG 23 (37) T ss_dssp GGTTSCHHHHHHHEEEC T ss_pred HHHHHHHHHHHHHEEEC T ss_conf 97200188886316434 No 3 >>2vla_A Bpuji, restriction endonuclease R.bpuji; hydrolase, DNA recognition, helix-turn-helix; HET: PG6; 1.30A {Bacillus pumilus} (A:1-100,A:254-285) Probab=10.47 E-value=1.2e+02 Score=12.78 Aligned_cols=21 Identities=29% Similarity=0.528 Sum_probs=13.9 Q ss_pred CCHHHHHHHHHHHHHHHHHCC Q ss_conf 483678999987876775168 Q gi|254781126|r 25 LPKDQKKAFFRHEKKVADHLN 45 (85) Q Consensus 25 L~~~~KKAFF~HEKKV~~~LN 45 (85) .++|.||.||..-...-+|.| T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~ 128 (132) T 2vla_A 108 TSEDDKKSFFKDWQQYYSNVN 128 (132) T ss_dssp TCHHHHHHHHHHHHHHHHCC- T ss_pred CCHHHHHHHHHHHHHHHHHCC T ss_conf 748889989999999986013 No 4 >>3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.30A {Agrobacterium tumefaciens str} (A:454-508) Probab=9.80 E-value=1.3e+02 Score=12.72 Aligned_cols=19 Identities=32% Similarity=0.370 Sum_probs=12.5 Q ss_pred HHHHHHHHHHHHHHHHHHH Q ss_conf 9863201337789874231 Q gi|254781126|r 59 YKARCKYRKESKLQKLSKS 77 (85) Q Consensus 59 Y~AR~KYRkesklqklsks 77 (85) |..----|-+..||+|||- T Consensus 27 ~adl~GERp~GRLqQLsKl 45 (55) T 3hi0_A 27 YCDFAGERLDGRLQQLAKL 45 (55) T ss_dssp GGGGCCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHH T ss_conf 4788889999999999999 No 5 >>3hf5_A 4-methylmuconolactone methylisomerase; ferredoxin, ferredoxin-like fold, beta-barrel, biodegradation, ortho- cleavage; HET: 3ML; 1.40A {Pseudomonas reinekei} PDB: 3hds_A* 3hfk_A* 2ifx_A* (A:) Probab=9.74 E-value=1.3e+02 Score=12.63 Aligned_cols=16 Identities=38% Similarity=0.582 Sum_probs=10.7 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 3678999987876775 Q gi|254781126|r 27 KDQKKAFFRHEKKVAD 42 (85) Q Consensus 27 ~~~KKAFF~HEKKV~~ 42 (85) .|-.||+|+|.|..-. T Consensus 90 sdirkawfehgktfig 105 (116) T 3hf5_A 90 SDIRKAWFEHGKYFIG 105 (116) T ss_dssp CHHHHHHHHHHHHHCS T ss_pred CHHHHHHHHHHHHHHC T ss_conf 9878999855998718 No 6 >>2jd6_0 Ferritin homolog, ferritin; metal transport, iron, pores, archaeon, entry channels, thermostability, hyperthermophIle, ferroxidase center; 2.75A {Pyrococcus furiosus} PDB: 2jd7_0 2jd8_0 (0:74-174) Probab=9.47 E-value=1.2e+02 Score=12.80 Aligned_cols=15 Identities=27% Similarity=0.494 Sum_probs=10.8 Q ss_pred HHHHHHHHHHHHHCC Q ss_conf 999987876775168 Q gi|254781126|r 31 KAFFRHEKKVADHLN 45 (85) Q Consensus 31 KAFF~HEKKV~~~LN 45 (85) +.-++|||+|+..++ T Consensus 15 e~aL~~Ek~Vt~~i~ 29 (101) T 2jd6_0 15 EAAYEHEKFISKSIY 29 (101) T ss_dssp HHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHH T ss_conf 999999999999999 No 7 >>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research, nysgxrc; 2.33A {Bacteroides vulgatus atcc 8482} (A:100-166) Probab=8.04 E-value=1.6e+02 Score=12.22 Aligned_cols=21 Identities=29% Similarity=0.703 Sum_probs=17.1 Q ss_pred HHHHHHHCCHHHHHHHHHHHH Q ss_conf 977665248367899998787 Q gi|254781126|r 18 ITRGVARLPKDQKKAFFRHEK 38 (85) Q Consensus 18 ITR~~~~L~~~~KKAFF~HEK 38 (85) |-.+|..||+..|+..|.-.. T Consensus 42 IY~~LS~LP~~ak~SWF~FDH 62 (67) T 3dp7_A 42 IYEGLSQLPEQVQKSWFGFDH 62 (67) T ss_dssp HHHHGGGSCHHHHHHHHHHHH T ss_pred HHHHHHHCCHHHHHHHHHHHH T ss_conf 255655385999999998888 No 8 >>5csm_A Chorismate mutase; chorismate pyruvatemutase, allosteric protein, complex (isomerase/peptide), transition state analog; HET: TRP; 2.00A {Saccharomyces cerevisiae} (A:) Probab=8.00 E-value=1.6e+02 Score=12.21 Aligned_cols=17 Identities=47% Similarity=0.718 Sum_probs=12.8 Q ss_pred HHHHHHHHHHHHHHHHH Q ss_conf 11489999999999776 Q gi|254781126|r 5 VRDISCLRALVFVITRG 21 (85) Q Consensus 5 vrdisclralvfvITR~ 21 (85) +.||.||.||---|.-| T Consensus 145 ~cDi~cLQALSrRIHyG 161 (256) T 5csm_A 145 TRDIECLQSLSRRIHFG 161 (256) T ss_dssp HHHHHHHHHHHHHHHTH T ss_pred HHHHHHHHHHHHHHHHH T ss_conf 99999999999887643 No 9 >>1eum_A Ferritin 1; ECFTNA, metal binding protein; 2.05A {Escherichia coli} (A:74-165) Probab=7.15 E-value=1.7e+02 Score=11.98 Aligned_cols=14 Identities=14% Similarity=0.574 Sum_probs=10.0 Q ss_pred HHHHHHHHHHHHHC Q ss_conf 99998787677516 Q gi|254781126|r 31 KAFFRHEKKVADHL 44 (85) Q Consensus 31 KAFF~HEKKV~~~L 44 (85) ..-++|||+|+..+ T Consensus 15 e~al~~Ek~Vt~~i 28 (92) T 1eum_A 15 QETYKHEQLITQKI 28 (92) T ss_dssp HHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHH T ss_conf 99999999999999 No 10 >>3kxu_A Ferritin; iron storage protein, disorder, iron, metal binding protein; 1.85A {Homo sapiens} PDB: 3hx2_A 3hx5_A 3hx7_A (A:84-191) Probab=6.84 E-value=1.8e+02 Score=11.89 Aligned_cols=14 Identities=43% Similarity=0.430 Sum_probs=9.8 Q ss_pred HHHHHHHHHHHHHC Q ss_conf 99998787677516 Q gi|254781126|r 31 KAFFRHEKKVADHL 44 (85) Q Consensus 31 KAFF~HEKKV~~~L 44 (85) ..-++||++|+..+ T Consensus 15 ~~al~~Ek~Vt~~i 28 (108) T 3kxu_A 15 KAAMALEKKLNQAL 28 (108) T ss_dssp HHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHH T ss_conf 99999999999999 Done!