BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254781126|ref|YP_003065539.1| hypothetical protein
CLIBASIA_05140 [Candidatus Liberibacter asiaticus str. psy62]
(85 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
Results from round 1
>gi|254781126|ref|YP_003065539.1| hypothetical protein CLIBASIA_05140 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040803|gb|ACT57599.1| hypothetical protein CLIBASIA_05140 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 85
Score = 172 bits (436), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 85/85 (100%), Positives = 85/85 (100%)
Query: 1 MNIFVRDISCLRALVFVITRGVARLPKDQKKAFFRHEKKVADHLNYNAGDRKSNIDKLYK 60
MNIFVRDISCLRALVFVITRGVARLPKDQKKAFFRHEKKVADHLNYNAGDRKSNIDKLYK
Sbjct: 1 MNIFVRDISCLRALVFVITRGVARLPKDQKKAFFRHEKKVADHLNYNAGDRKSNIDKLYK 60
Query: 61 ARCKYRKESKLQKLSKSKIFSIKHT 85
ARCKYRKESKLQKLSKSKIFSIKHT
Sbjct: 61 ARCKYRKESKLQKLSKSKIFSIKHT 85
>gi|254780984|ref|YP_003065397.1| hypothetical protein CLIBASIA_04425 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040661|gb|ACT57457.1| hypothetical protein CLIBASIA_04425 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 125
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/49 (61%), Positives = 38/49 (77%)
Query: 18 ITRGVARLPKDQKKAFFRHEKKVADHLNYNAGDRKSNIDKLYKARCKYR 66
ITR + L +++KKAFF HEKKV +LNYNA DRK NI++ Y+AR KYR
Sbjct: 65 ITRELNTLSENEKKAFFEHEKKVTSNLNYNARDRKHNINQFYEARGKYR 113
Searching..................................................done
Results from round 2
CONVERGED!
>gi|254781126|ref|YP_003065539.1| hypothetical protein CLIBASIA_05140 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040803|gb|ACT57599.1| hypothetical protein CLIBASIA_05140 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 85
Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 85/85 (100%), Positives = 85/85 (100%)
Query: 1 MNIFVRDISCLRALVFVITRGVARLPKDQKKAFFRHEKKVADHLNYNAGDRKSNIDKLYK 60
MNIFVRDISCLRALVFVITRGVARLPKDQKKAFFRHEKKVADHLNYNAGDRKSNIDKLYK
Sbjct: 1 MNIFVRDISCLRALVFVITRGVARLPKDQKKAFFRHEKKVADHLNYNAGDRKSNIDKLYK 60
Query: 61 ARCKYRKESKLQKLSKSKIFSIKHT 85
ARCKYRKESKLQKLSKSKIFSIKHT
Sbjct: 61 ARCKYRKESKLQKLSKSKIFSIKHT 85
>gi|254780984|ref|YP_003065397.1| hypothetical protein CLIBASIA_04425 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040661|gb|ACT57457.1| hypothetical protein CLIBASIA_04425 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 125
Score = 79.7 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 30/49 (61%), Positives = 38/49 (77%)
Query: 18 ITRGVARLPKDQKKAFFRHEKKVADHLNYNAGDRKSNIDKLYKARCKYR 66
ITR + L +++KKAFF HEKKV +LNYNA DRK NI++ Y+AR KYR
Sbjct: 65 ITRELNTLSENEKKAFFEHEKKVTSNLNYNARDRKHNINQFYEARGKYR 113
>gi|268323357|emb|CBH36945.1| probable phenylalanyl-tRNA synthetase, alpha chain [uncultured
archaeon]
Length = 527
Score = 35.4 bits (80), Expect = 2.6, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 6 RDISCLRALVFVITRGVARLPKDQKKAFFRHEKKVADHLNYNAGDRKSNIDKLYKAR 62
+D+ RALVF+I +G A + D+ ++FF +K+ +N+ ++ S IDK+ + R
Sbjct: 77 QDLPEKRALVFLIDKGRATV--DELQSFFDDDKESKIAINWLLRNKWSKIDKIGEER 131
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.319 0.137 0.370
Lambda K H
0.267 0.0434 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,505,561,824
Number of Sequences: 14124377
Number of extensions: 54020067
Number of successful extensions: 218894
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 218882
Number of HSP's gapped (non-prelim): 20
length of query: 85
length of database: 4,842,793,630
effective HSP length: 55
effective length of query: 30
effective length of database: 4,065,952,895
effective search space: 121978586850
effective search space used: 121978586850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.2 bits)
S2: 76 (33.8 bits)