RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254781126|ref|YP_003065539.1| hypothetical protein
CLIBASIA_05140 [Candidatus Liberibacter asiaticus str. psy62]
         (85 letters)



>gnl|CDD|130302 TIGR01235, pyruv_carbox, pyruvate carboxylase.  This enzyme plays a
           role in gluconeogensis but not glycolysis.
          Length = 1143

 Score = 26.7 bits (59), Expect = 1.6
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 1   MNIFVRDISCLRALVFVITRGVA-RLPKDQKKAFFRHEKKVADHLNY-NAG 49
           +++F RD S  R    V+    A  L ++ +     +  K+A  +NY NAG
Sbjct: 222 VHLFERDCSVQRRHQKVVEVAPAPYLSREVRDEIAEYAVKLAKAVNYINAG 272


>gnl|CDD|132563 TIGR03524, GldJ, gliding motility-associated lipoprotein GldJ.
           Members of this protein family are exclusive to the
           Bacteroidetes phylum (previously
           Cytophaga-Flavobacteria-Bacteroides). GldJ is a
           lipoprotein linked to a type of rapid surface gliding
           motility found in certain Bacteroidetes, such as
           Flavobacterium johnsoniae. Knockouts of GldJ abolish the
           gliding phenotype. GldJ is homologous to GldK. There is
           a GldJ homolog in Cytophaga hutchinsonii and several
           other species that has a different, shorter architecture
           and is represented by a separate model. Gliding motility
           appears closely linked to chitin utilization in the
           model species Flavobacterium johnsoniae. Bacteroidetes
           with members of this protein family appear to have all
           of the genes associated with gliding motility.
          Length = 559

 Score = 26.5 bits (58), Expect = 1.6
 Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 4/41 (9%)

Query: 17  VITRG----VARLPKDQKKAFFRHEKKVADHLNYNAGDRKS 53
           V+ R     +A++P D+ + + R     +D+ N   GD++S
Sbjct: 413 VVARYLPGEIAQVPVDKNETYLRTNFSKSDNANIRDGDKQS 453


>gnl|CDD|130598 TIGR01535, glucan_glucosid, glucan 1,4-alpha-glucosidase.  Glucan
          1,4-alpha-glucosidase catalyzes the hydrolysis of
          terminal 1,4-linked alpha-D-glucose residues from
          non-reducing ends of polysaccharides, releasing a
          beta-D-glucose monomer. Some forms of this enzyme can
          hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic
          bonds in polysaccharides as well.
          Length = 648

 Score = 25.6 bits (56), Expect = 3.2
 Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 7  DISCLRALVFVITRGVARLPKDQKKAFFRHEKKVADHLNYNAGDRKSNIDK 57
          D + ++ L F +T G + +  + K    + EK     L Y    + +N DK
Sbjct: 21 DTADIKELKFAVTDGKSFVSDETKDTTSKVEKFTDKALAY----KLTNTDK 67


>gnl|CDD|153033 pfam12599, DUF3768, Protein of unknown function (DUF3768).  This
          family of proteins is found in bacteria. Proteins in
          this family are typically between 108 and 129 amino
          acids in length. There are two conserved sequence
          motifs: NDP and RVLT.
          Length = 84

 Score = 25.2 bits (56), Expect = 3.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 17 VITRGVARLPKDQKKAFFR 35
          VIT+GVA L +D ++   R
Sbjct: 1  VITQGVAALGEDDQQELLR 19


>gnl|CDD|185184 PRK15284, PRK15284, putative fimbrial outer membrane usher protein
           StfC; Provisional.
          Length = 881

 Score = 25.2 bits (55), Expect = 4.3
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 6   RDISCLRALVFVITRGVARLPKD 28
           RD++   A+ F +T    +L KD
Sbjct: 424 RDLALFGAVAFDVTHSHTKLDKD 446


>gnl|CDD|132697 TIGR03658, IsdH_HarA, haptoglobin-binding heme uptake protein HarA.
            HarA is a heme-binding NEAT-domain (NEAr Transporter,
           pfam05031) protein which has been shown to bind to the
           haptoglobin-hemoglobin complex in order to extract heme
           from it. HarA has also been reported to bind hemoglobin
           directly. HarA (also known as IsdH) contains three NEAT
           domains as well as a sortase A C-terminal signal for
           localization to the cell wall. The heme bound at the
           third of these NEAT domains has been shown to be
           transferred to the IsdA protein also localized at the
           cell wall, presumably through an additional specific
           protein-protein interaction. Haptoglobin is a hemoglobin
           carrier protein involved in scavenging hemoglobin in the
           blood following red blood cell lysis and targetting it
           to the liver.
          Length = 895

 Score = 24.4 bits (52), Expect = 6.6
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)

Query: 37  EKKVADHLNYNAGDRKSNIDKLYKARCKYRKESKLQKLSKSKIF 80
           +KK  +HL     D    +DK  K + K    SK  KLS+SK+ 
Sbjct: 821 DKKTTEHL---PSDIHKTVDKTVKTKEKAGTPSKENKLSQSKML 861


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.325    0.136    0.389 

Gapped
Lambda     K      H
   0.267   0.0734    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,273,692
Number of extensions: 64174
Number of successful extensions: 166
Number of sequences better than 10.0: 1
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 16
Length of query: 85
Length of database: 5,994,473
Length adjustment: 54
Effective length of query: 31
Effective length of database: 4,827,641
Effective search space: 149656871
Effective search space used: 149656871
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.0 bits)