RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254781126|ref|YP_003065539.1| hypothetical protein CLIBASIA_05140 [Candidatus Liberibacter asiaticus str. psy62] (85 letters) >d1tyeb2 c.62.1.1 (B:107-354) Integrin beta A domain {Human (Homo sapiens) [TaxId: 9606]} Length = 248 Score = 24.6 bits (53), Expect = 2.4 Identities = 12/70 (17%), Positives = 20/70 (28%), Gaps = 8/70 (11%) Query: 14 LVFVITRGVARLPKDQKKAFFRHEKKVADHLNYNAGDRKSNIDKLYKARCKYRKESKL-Q 72 L+ T + D + A H+ + S Y + + Sbjct: 139 LLVFTTDAKTHIALDGRLAGIVQPNDGQCHVGSDNHYSASTTM-------DYPSLGLMTE 191 Query: 73 KLSKSKIFSI 82 KLS+ I I Sbjct: 192 KLSQKNINLI 201 >d2nuja1 d.38.1.1 (A:3-161) Hypothetical protein Jann_1972 {Jannaschia sp. CCS1 [TaxId: 290400]} Length = 159 Score = 23.3 bits (49), Expect = 6.4 Identities = 5/30 (16%), Positives = 13/30 (43%), Gaps = 2/30 (6%) Query: 14 LVFVI--TRGVARLPKDQKKAFFRHEKKVA 41 +V + G +P+ + +F + +A Sbjct: 129 VVLLNRDGSGRYPIPEAGRASFVTEDGVLA 158 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.325 0.136 0.389 Gapped Lambda K H 0.267 0.0473 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 288,969 Number of extensions: 10830 Number of successful extensions: 34 Number of sequences better than 10.0: 1 Number of HSP's gapped: 34 Number of HSP's successfully gapped: 7 Length of query: 85 Length of database: 2,407,596 Length adjustment: 50 Effective length of query: 35 Effective length of database: 1,721,096 Effective search space: 60238360 Effective search space used: 60238360 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 47 (22.5 bits)