RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781126|ref|YP_003065539.1| hypothetical protein
CLIBASIA_05140 [Candidatus Liberibacter asiaticus str. psy62]
         (85 letters)



>d1tyeb2 c.62.1.1 (B:107-354) Integrin beta A domain {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 248

 Score = 24.6 bits (53), Expect = 2.4
 Identities = 12/70 (17%), Positives = 20/70 (28%), Gaps = 8/70 (11%)

Query: 14  LVFVITRGVARLPKDQKKAFFRHEKKVADHLNYNAGDRKSNIDKLYKARCKYRKESKL-Q 72
           L+   T     +  D + A          H+  +     S           Y     + +
Sbjct: 139 LLVFTTDAKTHIALDGRLAGIVQPNDGQCHVGSDNHYSASTTM-------DYPSLGLMTE 191

Query: 73  KLSKSKIFSI 82
           KLS+  I  I
Sbjct: 192 KLSQKNINLI 201


>d2nuja1 d.38.1.1 (A:3-161) Hypothetical protein Jann_1972
           {Jannaschia sp. CCS1 [TaxId: 290400]}
          Length = 159

 Score = 23.3 bits (49), Expect = 6.4
 Identities = 5/30 (16%), Positives = 13/30 (43%), Gaps = 2/30 (6%)

Query: 14  LVFVI--TRGVARLPKDQKKAFFRHEKKVA 41
           +V +     G   +P+  + +F   +  +A
Sbjct: 129 VVLLNRDGSGRYPIPEAGRASFVTEDGVLA 158


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.136    0.389 

Gapped
Lambda     K      H
   0.267   0.0473    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 288,969
Number of extensions: 10830
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 7
Length of query: 85
Length of database: 2,407,596
Length adjustment: 50
Effective length of query: 35
Effective length of database: 1,721,096
Effective search space: 60238360
Effective search space used: 60238360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.5 bits)