Query gi|254781127|ref|YP_003065540.1| hypothetical protein CLIBASIA_05145 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 48 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Wed Jun 1 01:40:38 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781127.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2rpa_A Katanin P60 ATPase-cont 15.0 72 0.003 14.5 2.1 16 11-26 10-25 (78) 2 3c5t_B Exendin-4, exenatide; l 10.1 1.1E+02 0.0046 13.6 2.3 16 17-32 3-18 (31) 3 3hak_A Major prion protein; ce 7.2 1.5E+02 0.0062 12.9 2.0 20 2-21 49-69 (103) 4 3kuz_A Plexin-C1; structural g 7.0 1.5E+02 0.0063 12.8 2.0 19 15-33 49-68 (126) 5 2gpo_C Nuclear receptor-intera 6.9 1.3E+02 0.0054 13.2 1.1 13 14-26 3-15 (26) 6 2c1n_A 14-3-3 protein zeta/del 6.8 1.5E+02 0.0065 12.8 2.5 25 7-31 188-212 (258) 7 1wol_A ST0689, 122AA long cons 6.2 1.7E+02 0.007 12.6 1.7 14 16-29 33-46 (122) 8 2ktm_A Major prion protein; H2 5.7 1.8E+02 0.0075 12.4 2.4 19 2-20 31-50 (89) 9 1u3m_A CHPRP, prion-like prote 5.5 1.8E+02 0.0078 12.4 1.5 17 2-18 55-71 (117) 10 3g43_E Voltage-dependent L-typ 5.2 1.9E+02 0.0081 12.3 2.8 24 3-27 9-32 (81) No 1 >2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus} Probab=15.03 E-value=72 Score=14.51 Aligned_cols=16 Identities=50% Similarity=0.420 Sum_probs=12.9 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 6554669999999999 Q gi|254781127|r 11 IEITENIKQATEKALR 26 (48) Q Consensus 11 ieitenikqatekalr 26 (48) -||.||+|.|-|-||- T Consensus 10 ~~i~e~vklARe~Al~ 25 (78) T 2rpa_A 10 QMIVENVKLAREYALL 25 (78) T ss_dssp HHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHH T ss_conf 9999999999999997 No 2 >3c5t_B Exendin-4, exenatide; ligand-bound G protein-coupled receptor extracellular domain, G-protein coupled receptor, glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens} SCOP: j.6.1.1 PDB: 3c59_B* Probab=10.06 E-value=1.1e+02 Score=13.55 Aligned_cols=16 Identities=44% Similarity=0.507 Sum_probs=13.3 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 9999999999878769 Q gi|254781127|r 17 IKQATEKALRAFDEFH 32 (48) Q Consensus 17 ikqatekalrafdefh 32 (48) -||..|.|.|.|-|+- T Consensus 3 skqmeeeavrlfiewl 18 (31) T 3c5t_B 3 SKQMEEEAVRLFIEWL 18 (31) T ss_dssp HHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHH T ss_conf 8899999999999999 No 3 >3hak_A Major prion protein; cell membrane, disease mutation, disulfide bond, glycoprotein, golgi apparatus, GPI-anchor, lipoprotein, membrane, polymorphism; 1.80A {Homo sapiens} PDB: 2w9e_A 1qm2_A 1qm3_A 1hjm_A 1hjn_A 1e1u_A 1e1w_A 1e1p_A 1e1s_A 1i4m_A 1e1g_A 1e1j_A 3hjx_A 1h0l_A 1dwy_A 1dwz_A 1y2s_A 1xyu_A 1uw3_A* 1xyx_A ... Probab=7.19 E-value=1.5e+02 Score=12.88 Aligned_cols=20 Identities=25% Similarity=0.501 Sum_probs=15.0 Q ss_pred HHHHHHHHHHHHHHH-HHHHH Q ss_conf 367677788655466-99999 Q gi|254781127|r 2 KSLVRDYFKIEITEN-IKQAT 21 (48) Q Consensus 2 kslvrdyfkieiten-ikqat 21 (48) ...|+|-+.|.+||. |..++ T Consensus 49 ~~FV~DC~NiTVte~~i~~~~ 69 (103) T 3hak_A 49 NNFVHDCVNITIKQHTVTTTT 69 (103) T ss_dssp HHHHHHHHHHHHHHHHHHHHT T ss_pred CCHHHHCEEEEEEEEEECCCC T ss_conf 344454034367888731676 No 4 >3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens} Probab=6.99 E-value=1.5e+02 Score=12.83 Aligned_cols=19 Identities=37% Similarity=0.433 Sum_probs=14.1 Q ss_pred HHHHHHHHHHHHHH-HHHHH Q ss_conf 66999999999987-87698 Q gi|254781127|r 15 ENIKQATEKALRAF-DEFHF 33 (48) Q Consensus 15 enikqatekalraf-defhf 33 (48) ..|.|+.||.|-|| ...+| T Consensus 49 DTItQVKEKILDa~yk~~p~ 68 (126) T 3kuz_A 49 DTIGQAKEKIFQAFLSKNGS 68 (126) T ss_dssp CBHHHHHHHHHHHHHHHHSS T ss_pred CCHHHHHHHHHHHHHHCCCC T ss_conf 66789999999999802899 No 5 >2gpo_C Nuclear receptor-interacting protein 1; estrogen related receptor, ERR, ERRG, ESRRG, steroid receptor, RIP140, transcription; 1.95A {Homo sapiens} PDB: 2gpp_C* Probab=6.94 E-value=1.3e+02 Score=13.17 Aligned_cols=13 Identities=46% Similarity=0.565 Sum_probs=9.4 Q ss_pred HHHHHHHHHHHHH Q ss_conf 4669999999999 Q gi|254781127|r 14 TENIKQATEKALR 26 (48) Q Consensus 14 tenikqatekalr 26 (48) ..|||||....|- T Consensus 3 rnnikqaannsll 15 (26) T 2gpo_C 3 RNNIKQAANNSLL 15 (26) T ss_pred CCCHHHHHHHHHH T ss_conf 1228888404899 No 6 >2c1n_A 14-3-3 protein zeta/delta; signaling protein/complex, phosphorylation, 14-3-3, acetylation, nucleosome, signaling protein; HET: SEP; 2.0A {Homo sapiens} SCOP: a.118.7.1 PDB: 2c1j_A* 2bq0_A 2c23_A 2btp_A* 2c63_A* 2c74_A* 2b05_A* Probab=6.80 E-value=1.5e+02 Score=12.78 Aligned_cols=25 Identities=36% Similarity=0.365 Sum_probs=17.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 7788655466999999999987876 Q gi|254781127|r 7 DYFKIEITENIKQATEKALRAFDEF 31 (48) Q Consensus 7 dyfkieitenikqatekalrafdef 31 (48) -.|.-||..+...|-+-|-.|||+. T Consensus 188 SVF~YEi~~~~~~A~~iAk~afd~A 212 (258) T 2c1n_A 188 SVFYYEILNSPEKACSLAKTAFDEA 212 (258) T ss_dssp HHHHHHTSCCHHHHHHHHHHHHHHH T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH T ss_conf 9999999369379999999999999 No 7 >1wol_A ST0689, 122AA long conserved hypothetical protein; alpha helix, loop, unknown function; 1.62A {Sulfolobus tokodaii str} Probab=6.17 E-value=1.7e+02 Score=12.59 Aligned_cols=14 Identities=29% Similarity=0.304 Sum_probs=11.1 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 69999999999878 Q gi|254781127|r 16 NIKQATEKALRAFD 29 (48) Q Consensus 16 nikqatekalrafd 29 (48) ...||.||+++|+- T Consensus 33 ~aqqA~EkalKA~l 46 (122) T 1wol_A 33 LSQQCAEKAVKGLL 46 (122) T ss_dssp HHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHH T ss_conf 99999999999999 No 8 >2ktm_A Major prion protein; H2H3, peptide folding, fibrilization core, cell membrane, membrane, membrane protein; NMR {Ovis aries} Probab=5.73 E-value=1.8e+02 Score=12.45 Aligned_cols=19 Identities=16% Similarity=0.468 Sum_probs=13.9 Q ss_pred HHHHHHHHHHHHHHH-HHHH Q ss_conf 367677788655466-9999 Q gi|254781127|r 2 KSLVRDYFKIEITEN-IKQA 20 (48) Q Consensus 2 kslvrdyfkieiten-ikqa 20 (48) ...|+|-+.|.++|. |-.+ T Consensus 31 ~~FV~DCvNITVke~tittt 50 (89) T 2ktm_A 31 NNFVHDCVNITVKQHTVTTT 50 (89) T ss_dssp HHHHHHHHHHHHHHHHHHHH T ss_pred CCHHHHCEEEEEEEEEECCC T ss_conf 66213316657788882267 No 9 >1u3m_A CHPRP, prion-like protein; prion protein, TSE, membrane protein; NMR {Gallus gallus} SCOP: d.6.1.1 Probab=5.47 E-value=1.8e+02 Score=12.36 Aligned_cols=17 Identities=35% Similarity=0.473 Sum_probs=13.2 Q ss_pred HHHHHHHHHHHHHHHHH Q ss_conf 36767778865546699 Q gi|254781127|r 2 KSLVRDYFKIEITENIK 18 (48) Q Consensus 2 kslvrdyfkieitenik 18 (48) ...|+|.+.|.+||.+- T Consensus 55 d~FV~DCvNiTVte~~i 71 (117) T 1u3m_A 55 DVFVADCFNITVTEYSI 71 (117) T ss_dssp HHHHHHHHHHHHHHHTC T ss_pred CCHHHHHEEEEEEEEEE T ss_conf 44335413436787761 No 10 >3g43_E Voltage-dependent L-type calcium channel subunit alpha-1C; calmodulin-bound, coiled coil, acetylation, methylation, phosphoprotein, polymorphism; 2.10A {Homo sapiens} Probab=5.20 E-value=1.9e+02 Score=12.26 Aligned_cols=24 Identities=46% Similarity=0.660 Sum_probs=18.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 6767778865546699999999998 Q gi|254781127|r 3 SLVRDYFKIEITENIKQATEKALRA 27 (48) Q Consensus 3 slvrdyfkieitenikqatekalra 27 (48) .|||.-.+|.+.+|+.|+.+ .||. T Consensus 9 ALIRt~L~IK~~~~~dq~d~-ELR~ 32 (81) T 3g43_E 9 ALVRTALRIKTEGNLEQANE-ELRA 32 (81) T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHH T ss_pred HHHHHHCCCCCCCCHHHHHH-HHHH T ss_conf 99982021045666788779-9999 Done!