RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781127|ref|YP_003065540.1| hypothetical protein
CLIBASIA_05145 [Candidatus Liberibacter asiaticus str. psy62]
         (48 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 24.5 bits (53), Expect = 5.6
 Identities = 13/59 (22%), Positives = 19/59 (32%), Gaps = 27/59 (45%)

Query: 2   KSLVRDYFK--IEITENIKQATEKAL-RA---------------------FDEFHFLRD 36
           K L+++Y    I       + +  AL RA                     F+E   LRD
Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEE---LRD 175


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.325    0.139    0.391 

Gapped
Lambda     K      H
   0.267   0.0453    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 403,389
Number of extensions: 12018
Number of successful extensions: 86
Number of sequences better than 10.0: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 3
Length of query: 48
Length of database: 5,693,230
Length adjustment: 21
Effective length of query: 27
Effective length of database: 5,184,106
Effective search space: 139970862
Effective search space used: 139970862
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.7 bits)