RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254781128|ref|YP_003065541.1| hypothetical protein
CLIBASIA_05150 [Candidatus Liberibacter asiaticus str. psy62]
         (225 letters)



>gnl|CDD|37748 KOG2537, KOG2537, KOG2537, Phosphoglucomutase/phosphomannomutase
           [Carbohydrate transport and metabolism].
          Length = 539

 Score = 29.1 bits (65), Expect = 0.92
 Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 5/60 (8%)

Query: 58  VAADFSKIDHQSPVRLQNLSLNGVSIGLDGQDGTLVYGASLGVEGFHLEPRGGIDGDKVA 117
             ADF K   + P  L  +  N      DG    LVY        FHL     +DGDK+A
Sbjct: 256 CGADFVKTKQKPPKGLSPIKANTRCASFDGDADRLVYFYIDDDSEFHL-----LDGDKIA 310


>gnl|CDD|33435 COG3637, COG3637, Opacity protein and related surface antigens
           [Cell envelope biogenesis, outer membrane].
          Length = 199

 Score = 27.7 bits (61), Expect = 2.9
 Identities = 35/218 (16%), Positives = 60/218 (27%), Gaps = 30/218 (13%)

Query: 16  KIILSGLFLGFFSSAAMADYGYSPQFQPTIMVSNFAKFKGLYVAADFSKIDHQSPVRLQN 75
            +  + L     S+AA AD               +  + G Y  +D+S  D    +    
Sbjct: 4   LLAAAALAALLLSAAAAADAAAG----------WYGTYSGGYAGSDWSGSDSSPSI---G 50

Query: 76  LSLNGVSIGLDGQDGTLVYGASL-----GVEGFHLEPRGGIDGDKVAGTLLFRTGFTFDN 130
                   G + +    V G        G  G +    G    D  A     R G  +  
Sbjct: 51  FGGGLKLAGYNLKYRYSVLGVEGSFTYTGQSGRYSGGSGKNQVDNKAWYGSLRAGPDYRI 110

Query: 131 NNSSILQNTLIYGFGGARIRNIMSVESADTAKSTIRNIVANGFLDKVIGVGIEKKLASML 190
           N+         YG  G     +    + +   S   +    G+     G G++      +
Sbjct: 111 ND-----RFSPYGGAGVAYGKV-KTSTDEVGGSADESKTKTGYA---YGAGVQYNPTDNV 161

Query: 191 SIRGEYRYVACYDQPWDVSKWREK---GDFTAGVVLRF 225
           +I   Y Y     +      +           GV  +F
Sbjct: 162 AIDLGYEYSDFGKKDGVDGGYSGDVKTHTVKVGVGYKF 199


>gnl|CDD|144246 pfam00580, UvrD-helicase, UvrD/REP helicase.  The Rep family
           helicases are composed of four structural domains. The
           Rep family function as dimers. REP helicases catalyse
           ATP dependent unwinding of double stranded DNA to single
           stranded DNA. Bacillus subtilis addA and Escherichia
           coli exodeoxyribonuclease V beta have large insertions
           near to the carboxy-terminus relative to other members
           of the family.
          Length = 494

 Score = 26.9 bits (60), Expect = 4.2
 Identities = 10/17 (58%), Positives = 11/17 (64%)

Query: 141 IYGFGGARIRNIMSVES 157
           IYGF GA I NI+  E 
Sbjct: 252 IYGFRGADIENILKFEK 268


>gnl|CDD|33739 COG3958, COG3958, Transketolase, C-terminal subunit [Carbohydrate
           transport and metabolism].
          Length = 312

 Score = 26.3 bits (58), Expect = 7.5
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 147 ARIRNIMSVESADTAKSTIRNIVANGFLDKVIGVGI-EKKLASM---LSIRGEYRYVACY 202
            R  + + V  AD + ST     A  F D+   VGI E+ +      L++ G+  +V+ +
Sbjct: 21  GRKNSDIVVLDADLSSSTKTGYFAKEFPDRFFNVGIAEQDMVGTAAGLALAGKKPFVSTF 80


>gnl|CDD|32659 COG2831, FhaC, Hemolysin activation/secretion protein
           [Intracellular trafficking and secretion].
          Length = 554

 Score = 26.1 bits (57), Expect = 7.9
 Identities = 24/115 (20%), Positives = 42/115 (36%), Gaps = 7/115 (6%)

Query: 16  KIILSGLFL--GFFSSAAMADYGYSPQFQPTIMVSNFAKFKGLYVAADFSKIDHQSPVRL 73
           K  + G +   GF   +   D G+    +    +      +  YV  D+ K+ + S   L
Sbjct: 445 KFSIGGRYSVRGFDGGSLSGDRGWYLSNELRWPLPPGGALQ-PYVFVDYGKVYNNSAEYL 503

Query: 74  QNLSLNGVSIGLDGQDGTLVYGASLGVEGFHLEPRGGIDGDKVAGTLLFRTGFTF 128
              +L G  +GL G      +   L + G  L    G D  +    + F   ++F
Sbjct: 504 SGETLAGAGLGLRGNL-KDGFSYDLDL-GRPLSKPAGFDNRRT--VVGFSFSYSF 554


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.322    0.140    0.412 

Gapped
Lambda     K      H
   0.267   0.0649    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,676,010
Number of extensions: 136426
Number of successful extensions: 338
Number of sequences better than 10.0: 1
Number of HSP's gapped: 338
Number of HSP's successfully gapped: 10
Length of query: 225
Length of database: 6,263,737
Length adjustment: 90
Effective length of query: 135
Effective length of database: 4,318,927
Effective search space: 583055145
Effective search space used: 583055145
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.5 bits)