RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254781128|ref|YP_003065541.1| hypothetical protein
CLIBASIA_05150 [Candidatus Liberibacter asiaticus str. psy62]
         (225 letters)



>1orm_A Outer membrane protein X; OMPX, trosy, DHPC, detergents,
           lipids, micelles; NMR {Escherichia coli} (A:)
          Length = 148

 Score = 31.2 bits (70), Expect = 0.13
 Identities = 18/158 (11%), Positives = 42/158 (26%), Gaps = 20/158 (12%)

Query: 68  QSPVRLQNLSLNGVSIGLDGQDGTLVYGASLGVEGFHLEPRGGIDGDKVAGTLLFRTGFT 127
           QS  + Q   + G ++    ++     G                             G  
Sbjct: 11  QSDAQGQMNKMGGFNLKYRYEEDNSPLGVIGSFTYTEKSRTASSGDYNKNQYYGITAGPA 70

Query: 128 FDNNNSSILQNTLIYGFGGARIRNIMSVESADTAKSTIRNIVANGFLDKVIGVGIEKKLA 187
           +  N+ + +   +  G+G  +     + ++  +                  G G++    
Sbjct: 71  YRINDWASIYGVVGVGYGKFQTTEYPTYKNDTS------------DYGFSYGAGLQFNPM 118

Query: 188 SMLSIRGEYRYVACYDQPWDVSKWREKGDFTAGVVLRF 225
             +++   Y           +      G + AGV  RF
Sbjct: 119 ENVALDFSYEQS-------RIRSVDV-GTWIAGVGYRF 148


>2k0l_A Outer membrane protein A; OMPA, trosy, sidechain, DHPC
           micelles; NMR {Klebsiella pneumoniae} (A:)
          Length = 216

 Score = 30.5 bits (68), Expect = 0.20
 Identities = 22/146 (15%), Positives = 39/146 (26%), Gaps = 8/146 (5%)

Query: 80  GVSIGLDGQDGTLVYGASLGVEGFHLEPRGGIDGDKVAGTLLFRTGFTFDNNNSSILQNT 139
           G   G                 G         +G   A  +       +   +     + 
Sbjct: 55  GAFGGYQVNPYLGFEM-GYDWLGRMAYKGSVDNGAFKAQGVQLTAKLGYPITD-----DL 108

Query: 140 LIYGFGGARIRNIMSVESADTAKSTIRNIVANGFLDKVIGVGIEKKLASMLSIRGEYRYV 199
            IY   G  +    S  +  +   +            V   G+E  +   ++ R EY++V
Sbjct: 109 DIYTRLGGMVWRADSKGNYASTGVSRSEHDTGVSP--VFAGGVEWAVTRDIATRLEYQWV 166

Query: 200 ACYDQPWDVSKWREKGDFTAGVVLRF 225
                   V    + G  + GV  RF
Sbjct: 167 NNIGDAGTVGTRPDNGMLSLGVSYRF 192


>1qjp_A Outer membrane protein A; HET: C8E; 1.65A {Escherichia coli}
           (A:)
          Length = 171

 Score = 27.4 bits (60), Expect = 1.8
 Identities = 20/143 (13%), Positives = 38/143 (26%), Gaps = 10/143 (6%)

Query: 89  DGTLVYGASLGVEGFHLEPRGGIDGDKVAGTLLFRTGFTFDNNNSSILQNTLIYGFGGAR 148
           +  L  GA  G   + + P  G +              + +N         L    G   
Sbjct: 32  ENKLGAGAFGG---YQVNPYVGFEMG-YDWLGRMPYKGSVENGAYKAQGVQLTAKLGYPI 87

Query: 149 IRNIMSVESADTAKSTIRNIVANGFLDK------VIGVGIEKKLASMLSIRGEYRYVACY 202
             ++                      +       V   G+E  +   ++ R EY++    
Sbjct: 88  TDDLDIYTRLGGMVWRADTYSNVYGKNHDTGVSPVFAGGVEYAITPEIATRLEYQWTNNI 147

Query: 203 DQPWDVSKWREKGDFTAGVVLRF 225
                +    + G  + GV  RF
Sbjct: 148 GDAHTIGTRPDNGMLSLGVSYRF 170


>3fde_A E3 ubiquitin-protein ligase UHRF1; SRA domain, base
           flipping, DNA CPG methylation, cell cycle, developmental
           protein, DNA damage; HET: 5CM; 1.41A {Mus musculus} PDB:
           2zo0_B* 2zo2_B* 3f8i_A* 2zo1_B* 3f8j_B* 2zkd_A* 2zke_A*
           2zkf_A* 2zkg_A 3dwh_A 3bi7_A 3clz_A* (A:1-194)
          Length = 194

 Score = 25.3 bits (55), Expect = 6.9
 Identities = 32/172 (18%), Positives = 49/172 (28%), Gaps = 37/172 (21%)

Query: 77  SLNGVSIGLDGQDGTLVYGASLGVEGFHLEPRGGIDGDKVAGTL-LFRTGFTFDNNNSSI 135
            + GV +G         +   +   G H     GI G    G   L   G   D+ ++  
Sbjct: 9   PIPGVPVG-----TMWRFRVQVSESGVHRPHVAGIHGRSNDGAYSLVLAGGYEDDVDNG- 62

Query: 136 LQNTLIYGFGGARIRNIMSVESADTAKSTIRNIVANGFLDKVIGVGIEKKLASMLS---- 191
             N   Y   G R  +     +  ++   + N   N  L       I +K A        
Sbjct: 63  --NYFTYTGSGGRDLSGNKRTAGQSSDQKLTNN--NRALALNCHSPINEKGAEAEDWRQG 118

Query: 192 -----IRGE-------------YRYVACYDQPWDVSKWREKGDFTAGVVLRF 225
                +R                RY   Y     V  W E+G     +V R+
Sbjct: 119 KPVRVVRNMKGGKHSKYAPAEGNRYDGIY---KVVKYWPERGKSG-FLVWRY 166


>1p4t_A Outer membrane protein NSPA; beta barrel; HET: CXE; 2.55A
           {Neisseria meningitidis} (A:)
          Length = 155

 Score = 25.0 bits (54), Expect = 8.1
 Identities = 16/129 (12%), Positives = 35/129 (27%), Gaps = 14/129 (10%)

Query: 97  SLGVEGFHLEPRGGIDGDKVAGTLLFRTGFTFDNNNSSILQNTLIYGFGGARIRNIMSVE 156
              V+    +       D    ++     + FD  +         Y      +       
Sbjct: 41  RFAVDYTRYKNYKAPSTDFKLYSIGASAIYDFDTQS-----PVKPYLGARLSLNRASVDL 95

Query: 157 SADTAKSTIRNIVANGFLDKVIGVGIEKKLASMLSIRGEYRYVACYDQPWDVSKWREKGD 216
               + S          +   +  G+   +   + +   YRY        +  K    G+
Sbjct: 96  GGSDSFS-------QTSIGLGVLTGVSYAVTPNVDLDAGYRYNYIGKV--NTVKNVRSGE 146

Query: 217 FTAGVVLRF 225
            +AGV ++F
Sbjct: 147 LSAGVRVKF 155


>2f1v_A Outer membrane protein W; outer membrane protein beta
           barrel; 2.70A {Escherichia coli K12} PDB: 2f1t_A (A:)
          Length = 197

 Score = 25.1 bits (54), Expect = 8.2
 Identities = 8/91 (8%), Positives = 24/91 (26%), Gaps = 8/91 (8%)

Query: 143 GFGGARIRNIMSVESADTAKSTIRNIVANGFLDKVIGVGIEKKLASMLSIRGEYRYVACY 202
           G G        +  +    ++ + ++           VG++  +     +     Y+   
Sbjct: 101 GAGINYTTFFDNGFNDHGKEAGLSDLSLKDSWGAAGQVGVDYLINRDWLVNMSVWYMDID 160

Query: 203 -DQPWDVSKWREKGD-------FTAGVVLRF 225
               + +   ++          F      RF
Sbjct: 161 TTANYKLGGAQQHDSVRLDPWVFMFSAGYRF 191


>2pb7_A E3 ubiquitin-protein ligase UHRF1; beta barrel, NEW fold;
           1.90A {Homo sapiens} (A:)
          Length = 239

 Score = 24.9 bits (54), Expect = 9.2
 Identities = 35/172 (20%), Positives = 52/172 (30%), Gaps = 36/172 (20%)

Query: 77  SLNGVSIGLDGQDGTLVYGASLGVEGFHLEPRGGIDGDKVAGT--LLFRTGFTFDNNNSS 134
            + G+ +G         +   +   G H     GI G    G   L+   G+  D ++  
Sbjct: 16  PIPGIPVG-----TMWRFRVQVSESGVHRPHVAGIHGRSNDGAYSLVLAGGYEDDVDHG- 69

Query: 135 ILQNTLIYGFGGARIRNIM---SVESAD-TAKSTIRNIVANGFLDKVIGVGIEKKLASML 190
              N   Y   G R  +     + +S D    +T R +  N F       G E K     
Sbjct: 70  ---NFFTYTGSGGRDLSGNKRTAEQSCDQKLTNTNRALALNCFAPINDQEGAEAKDWRSG 126

Query: 191 S----IRGE-------------YRYVACYDQPWDVSKWREKGDFTAGVVLRF 225
                +R                RY   Y     V  W EKG     +V R+
Sbjct: 127 KPVRVVRNVKGGKNSKYAPAEGNRYDGIY---KVVKYWPEKGKSG-FLVWRY 174


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.322    0.140    0.412 

Gapped
Lambda     K      H
   0.267   0.0584    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,677,174
Number of extensions: 70046
Number of successful extensions: 155
Number of sequences better than 10.0: 1
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 12
Length of query: 225
Length of database: 4,956,049
Length adjustment: 85
Effective length of query: 140
Effective length of database: 2,082,624
Effective search space: 291567360
Effective search space used: 291567360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.5 bits)