BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254781129|ref|YP_003065542.1| hypothetical protein CLIBASIA_05155 [Candidatus Liberibacter asiaticus str. psy62] (103 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254781129|ref|YP_003065542.1| hypothetical protein CLIBASIA_05155 [Candidatus Liberibacter asiaticus str. psy62] gi|254040806|gb|ACT57602.1| hypothetical protein CLIBASIA_05155 [Candidatus Liberibacter asiaticus str. psy62] Length = 103 Score = 210 bits (535), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 103/103 (100%), Positives = 103/103 (100%) Query: 1 MLRDGLHKAASNALNFATTQVQYSTFTPEKMKLSQDYLGNTNPDAVNQLNLDDQKINNII 60 MLRDGLHKAASNALNFATTQVQYSTFTPEKMKLSQDYLGNTNPDAVNQLNLDDQKINNII Sbjct: 1 MLRDGLHKAASNALNFATTQVQYSTFTPEKMKLSQDYLGNTNPDAVNQLNLDDQKINNII 60 Query: 61 LSKAMVFPNQSDIASLKEGVALNLVKDESLSCVIAEGEKLEKE 103 LSKAMVFPNQSDIASLKEGVALNLVKDESLSCVIAEGEKLEKE Sbjct: 61 LSKAMVFPNQSDIASLKEGVALNLVKDESLSCVIAEGEKLEKE 103 >gi|315122524|ref|YP_004063013.1| hypothetical protein CKC_03880 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495926|gb|ADR52525.1| hypothetical protein CKC_03880 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 138 Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 41/80 (51%), Positives = 58/80 (72%), Gaps = 4/80 (5%) Query: 1 MLRDGLHKAASNALNFATTQVQYSTFTPEKMKLSQDYLGNTNPDAVNQLNLDDQKINNII 60 M R+ LH AASNAL FA + + S+ T E ++ +QDYL +TNPDA+N LN+DDQK+ NI+ Sbjct: 52 MFRNSLHLAASNALKFAMAKFKSSSLTSEVLESAQDYLRSTNPDALNYLNIDDQKMTNIL 111 Query: 61 LSKAMVFPNQSDIA--SLKE 78 +SK+ F +Q ++ SLKE Sbjct: 112 ISKS--FSSQDKLSDPSLKE 129 >gi|13517634|gb|AAK28912.1|AF338706_3 probable GTP binding protein [Corynebacterium jeikeium] Length = 181 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 3/88 (3%) Query: 15 NFATTQVQ-YSTFTPEKMKLSQDYLGNTNPDAVNQLNLDDQKINNIILSKAMVFPNQSDI 73 FAT +Q Y T P+++ + + G+T P A ++ D +K I ++ + F + ++ Sbjct: 90 GFATLGLQTYLTAGPKEVARGRIHQGDTAPQAAGVIHTDFEK--GFIKAEIVAFEDLDEL 147 Query: 74 ASLKEGVALNLVKDESLSCVIAEGEKLE 101 S+ E A V+ E V+A+G+ +E Sbjct: 148 GSMAEARAHGKVRQEGKDYVMADGDVVE 175 >gi|187933829|ref|YP_001885974.1| ferrous iron transport protein B [Clostridium botulinum B str. Eklund 17B] gi|187721982|gb|ACD23203.1| ferrous iron transport protein B [Clostridium botulinum B str. Eklund 17B] Length = 716 Score = 33.9 bits (76), Expect = 8.0, Method: Composition-based stats. Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 10/101 (9%) Query: 2 LRDGLHKAASNALNFATTQVQYSTFTPEKMKLSQDYLGNTNPDAVNQLNLDDQKINNIIL 61 L+D ++ + N++N T ++Y++F E + L + L PD NL D KIN L Sbjct: 178 LKDEIYNLSFNSINKNTISIKYNSFIEESILLIEKSL----PD-----NLKD-KINTRWL 227 Query: 62 SKAMVFPNQSDIASLKEGVALNLVKDESLSCVIAEGEKLEK 102 S ++ + + ++S+ + NL+ D +S I ++ K Sbjct: 228 SLKLLEGDLTLLSSIDNYIGFNLLDDTGISKAIYNAKEYLK 268 Searching..................................................done Results from round 2 CONVERGED! >gi|254781129|ref|YP_003065542.1| hypothetical protein CLIBASIA_05155 [Candidatus Liberibacter asiaticus str. psy62] gi|254040806|gb|ACT57602.1| hypothetical protein CLIBASIA_05155 [Candidatus Liberibacter asiaticus str. psy62] Length = 103 Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats. Identities = 103/103 (100%), Positives = 103/103 (100%) Query: 1 MLRDGLHKAASNALNFATTQVQYSTFTPEKMKLSQDYLGNTNPDAVNQLNLDDQKINNII 60 MLRDGLHKAASNALNFATTQVQYSTFTPEKMKLSQDYLGNTNPDAVNQLNLDDQKINNII Sbjct: 1 MLRDGLHKAASNALNFATTQVQYSTFTPEKMKLSQDYLGNTNPDAVNQLNLDDQKINNII 60 Query: 61 LSKAMVFPNQSDIASLKEGVALNLVKDESLSCVIAEGEKLEKE 103 LSKAMVFPNQSDIASLKEGVALNLVKDESLSCVIAEGEKLEKE Sbjct: 61 LSKAMVFPNQSDIASLKEGVALNLVKDESLSCVIAEGEKLEKE 103 >gi|315122524|ref|YP_004063013.1| hypothetical protein CKC_03880 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495926|gb|ADR52525.1| hypothetical protein CKC_03880 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 138 Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats. Identities = 41/80 (51%), Positives = 58/80 (72%), Gaps = 4/80 (5%) Query: 1 MLRDGLHKAASNALNFATTQVQYSTFTPEKMKLSQDYLGNTNPDAVNQLNLDDQKINNII 60 M R+ LH AASNAL FA + + S+ T E ++ +QDYL +TNPDA+N LN+DDQK+ NI+ Sbjct: 52 MFRNSLHLAASNALKFAMAKFKSSSLTSEVLESAQDYLRSTNPDALNYLNIDDQKMTNIL 111 Query: 61 LSKAMVFPNQSDIA--SLKE 78 +SK+ F +Q ++ SLKE Sbjct: 112 ISKS--FSSQDKLSDPSLKE 129 >gi|88803474|ref|ZP_01119000.1| putative outermembrane protein [Polaribacter irgensii 23-P] gi|88781040|gb|EAR12219.1| putative outermembrane protein [Polaribacter irgensii 23-P] Length = 264 Score = 35.1 bits (79), Expect = 3.7, Method: Composition-based stats. Identities = 12/35 (34%), Positives = 25/35 (71%) Query: 25 TFTPEKMKLSQDYLGNTNPDAVNQLNLDDQKINNI 59 T+T +++KL+ D+L + D +N LN++ ++ +NI Sbjct: 122 TYTRKEVKLAADFLRFEHTDGLNYLNVEVKRFDNI 156 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.313 0.131 0.336 Lambda K H 0.267 0.0397 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,552,691,748 Number of Sequences: 14124377 Number of extensions: 47093444 Number of successful extensions: 115513 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 13 Number of HSP's that attempted gapping in prelim test: 115503 Number of HSP's gapped (non-prelim): 22 length of query: 103 length of database: 4,842,793,630 effective HSP length: 72 effective length of query: 31 effective length of database: 3,825,838,486 effective search space: 118600993066 effective search space used: 118600993066 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 75 (33.5 bits)