RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254781129|ref|YP_003065542.1| hypothetical protein
CLIBASIA_05155 [Candidatus Liberibacter asiaticus str. psy62]
         (103 letters)



>gnl|CDD|149582 pfam08580, KAR9, Yeast cortical protein KAR9.  The KAR9 protein in
           Saccharomyces cerevisiae is a cytoskeletal protein
           required for karyogamy, correct positioning of the
           mitotic spindle and for orientation of cytoplasmic
           microtubules. KAR9 localizes at the shmoo tip in mating
           cells and at the tip of the growing bud in anaphase.
          Length = 626

 Score = 24.8 bits (54), Expect = 5.6
 Identities = 8/25 (32%), Positives = 14/25 (56%)

Query: 14  LNFATTQVQYSTFTPEKMKLSQDYL 38
            NF+   ++  TF P+   + +DYL
Sbjct: 178 TNFSNKSLRLPTFNPQDKSIYEDYL 202


>gnl|CDD|179539 PRK03103, PRK03103, DNA polymerase IV; Reviewed.
          Length = 409

 Score = 24.6 bits (54), Expect = 6.7
 Identities = 9/28 (32%), Positives = 11/28 (39%)

Query: 38  LGNTNPDAVNQLNLDDQKINNIILSKAM 65
           L N   D V QL+L   +     L   M
Sbjct: 346 LSNLVSDDVWQLSLFGDRERKRSLGYVM 373


>gnl|CDD|171793 PRK12880, PRK12880, 3-oxoacyl-(acyl carrier protein) synthase III;
           Reviewed.
          Length = 353

 Score = 24.2 bits (52), Expect = 8.7
 Identities = 7/18 (38%), Positives = 11/18 (61%)

Query: 46  VNQLNLDDQKINNIILSK 63
             +L L+D K+ N I+ K
Sbjct: 279 KEELKLNDDKVPNFIMEK 296


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.310    0.127    0.338 

Gapped
Lambda     K      H
   0.267   0.0721    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,518,690
Number of extensions: 78852
Number of successful extensions: 85
Number of sequences better than 10.0: 1
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 10
Length of query: 103
Length of database: 5,994,473
Length adjustment: 70
Effective length of query: 33
Effective length of database: 4,481,913
Effective search space: 147903129
Effective search space used: 147903129
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 50 (23.1 bits)