RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254781129|ref|YP_003065542.1| hypothetical protein CLIBASIA_05155 [Candidatus Liberibacter asiaticus str. psy62] (103 letters) >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Score = 26.4 bits (57), Expect = 1.6 Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 7/44 (15%) Query: 29 EKMKLSQDYLGNTNPDAVNQLNLDDQKINNIILSKAMVFPNQSD 72 EK K +D L N Q+ + KINN I KA F Q D Sbjct: 114 EKAK--KD-LEEWNQRQSEQV--EKNKINNRIADKA--FYQQPD 150 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.310 0.127 0.338 Gapped Lambda K H 0.267 0.0450 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 747,515 Number of extensions: 26867 Number of successful extensions: 28 Number of sequences better than 10.0: 1 Number of HSP's gapped: 28 Number of HSP's successfully gapped: 2 Length of query: 103 Length of database: 5,693,230 Length adjustment: 68 Effective length of query: 35 Effective length of database: 4,044,638 Effective search space: 141562330 Effective search space used: 141562330 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 50 (23.7 bits)