RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781129|ref|YP_003065542.1| hypothetical protein
CLIBASIA_05155 [Candidatus Liberibacter asiaticus str. psy62]
         (103 letters)



>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 26.4 bits (57), Expect = 1.6
 Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 7/44 (15%)

Query: 29  EKMKLSQDYLGNTNPDAVNQLNLDDQKINNIILSKAMVFPNQSD 72
           EK K  +D L   N     Q+  +  KINN I  KA  F  Q D
Sbjct: 114 EKAK--KD-LEEWNQRQSEQV--EKNKINNRIADKA--FYQQPD 150


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.310    0.127    0.338 

Gapped
Lambda     K      H
   0.267   0.0450    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 747,515
Number of extensions: 26867
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 2
Length of query: 103
Length of database: 5,693,230
Length adjustment: 68
Effective length of query: 35
Effective length of database: 4,044,638
Effective search space: 141562330
Effective search space used: 141562330
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 50 (23.7 bits)