RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781129|ref|YP_003065542.1| hypothetical protein
CLIBASIA_05155 [Candidatus Liberibacter asiaticus str. psy62]
         (103 letters)



>d2itba1 a.25.1.7 (A:3-201) Putative
          tRNA-(Ms(2)io(6)a)-hydroxylase PP2188 {Pseudomonas
          putida [TaxId: 303]}
          Length = 199

 Score = 22.8 bits (49), Expect = 7.6
 Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 3/43 (6%)

Query: 1  MLRDGLH---KAASNALNFATTQVQYSTFTPEKMKLSQDYLGN 40
          +L D  +   KAAS AL+       +        +L+++ L +
Sbjct: 28 LLIDHKNCEFKAASTALSLIAKYNTHLDLINMMSRLAREELVH 70


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.310    0.127    0.338 

Gapped
Lambda     K      H
   0.267   0.0640    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 323,832
Number of extensions: 12041
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 2
Length of query: 103
Length of database: 2,407,596
Length adjustment: 64
Effective length of query: 39
Effective length of database: 1,528,876
Effective search space: 59626164
Effective search space used: 59626164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 47 (22.1 bits)