RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254781129|ref|YP_003065542.1| hypothetical protein CLIBASIA_05155 [Candidatus Liberibacter asiaticus str. psy62] (103 letters) >d2itba1 a.25.1.7 (A:3-201) Putative tRNA-(Ms(2)io(6)a)-hydroxylase PP2188 {Pseudomonas putida [TaxId: 303]} Length = 199 Score = 22.8 bits (49), Expect = 7.6 Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 3/43 (6%) Query: 1 MLRDGLH---KAASNALNFATTQVQYSTFTPEKMKLSQDYLGN 40 +L D + KAAS AL+ + +L+++ L + Sbjct: 28 LLIDHKNCEFKAASTALSLIAKYNTHLDLINMMSRLAREELVH 70 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.310 0.127 0.338 Gapped Lambda K H 0.267 0.0640 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 323,832 Number of extensions: 12041 Number of successful extensions: 9 Number of sequences better than 10.0: 1 Number of HSP's gapped: 9 Number of HSP's successfully gapped: 2 Length of query: 103 Length of database: 2,407,596 Length adjustment: 64 Effective length of query: 39 Effective length of database: 1,528,876 Effective search space: 59626164 Effective search space used: 59626164 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 47 (22.1 bits)