BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781129|ref|YP_003065542.1| hypothetical protein
CLIBASIA_05155 [Candidatus Liberibacter asiaticus str. psy62]
         (103 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781129|ref|YP_003065542.1| hypothetical protein CLIBASIA_05155 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 103

 Score =  210 bits (535), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 103/103 (100%), Positives = 103/103 (100%)

Query: 1   MLRDGLHKAASNALNFATTQVQYSTFTPEKMKLSQDYLGNTNPDAVNQLNLDDQKINNII 60
           MLRDGLHKAASNALNFATTQVQYSTFTPEKMKLSQDYLGNTNPDAVNQLNLDDQKINNII
Sbjct: 1   MLRDGLHKAASNALNFATTQVQYSTFTPEKMKLSQDYLGNTNPDAVNQLNLDDQKINNII 60

Query: 61  LSKAMVFPNQSDIASLKEGVALNLVKDESLSCVIAEGEKLEKE 103
           LSKAMVFPNQSDIASLKEGVALNLVKDESLSCVIAEGEKLEKE
Sbjct: 61  LSKAMVFPNQSDIASLKEGVALNLVKDESLSCVIAEGEKLEKE 103


>gi|254780877|ref|YP_003065290.1| ATP-dependent Clp protease, ATP-binding subunit protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 853

 Score = 20.4 bits (41), Expect = 8.3,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 23/37 (62%)

Query: 55  KINNIILSKAMVFPNQSDIASLKEGVALNLVKDESLS 91
           +++ IIL + +   + + I  ++ G  L+L+K+ ++S
Sbjct: 751 RLDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNIS 787


>gi|254780181|ref|YP_003064594.1| phosphopantetheine adenylyltransferase [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 182

 Score = 20.4 bits (41), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)

Query: 78 EGVALNLVKDESLSCVIAEGEK 99
          EG+A+NL KD S   VI  G +
Sbjct: 77 EGLAVNLAKDISAQ-VIVRGLR 97


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.310    0.127    0.338 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,957
Number of Sequences: 1233
Number of extensions: 2128
Number of successful extensions: 7
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 103
length of database: 328,796
effective HSP length: 62
effective length of query: 41
effective length of database: 252,350
effective search space: 10346350
effective search space used: 10346350
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.9 bits)
S2: 32 (16.9 bits)