Query         gi|254781130|ref|YP_003065543.1| hypothetical protein CLIBASIA_05160 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 378
No_of_seqs    114 out of 123
Neff          7.6 
Searched_HMMs 13730
Date          Wed Jun  1 11:46:44 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781130.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1nkpa_ a.38.1.1 (A:) Myc prot  92.1     0.4 2.9E-05   25.3   8.1   60  308-371    26-85  (88)
  2 d1nkpb_ a.38.1.1 (B:) Max prot  91.0    0.51 3.7E-05   24.5   7.5   60  308-372    22-81  (83)
  3 d1am9a_ a.38.1.1 (A:) SREBP-1a  86.2       1 7.4E-05   22.1   7.1   53  309-367    27-79  (80)
  4 d1nlwa_ a.38.1.1 (A:) Mad prot  83.5     1.3 9.6E-05   21.3   7.0   43  327-369    36-78  (79)
  5 d1uklc_ a.38.1.1 (C:) SREBP-2   79.5     1.8 0.00013   20.3   6.2   49  308-362     9-57  (61)
  6 d2azeb1 e.63.1.2 (B:201-301) T  77.0     2.1 0.00015   19.8   5.5   35  340-374     3-37  (101)
  7 d1q08a_ a.6.1.3 (A:) Transcrip  75.2     2.3 0.00017   19.4   5.2   60  301-372    13-73  (94)
  8 d2jf2a1 b.81.1.1 (A:1-262) UDP  73.5     1.5 0.00011   20.9   3.4   31  346-376   228-258 (262)
  9 d2p90a1 c.56.8.1 (A:6-274) Hyp  71.8     2.1 0.00015   19.8   3.8   68  303-372   175-258 (269)
 10 d1fxka_ a.2.5.1 (A:) Prefoldin  71.6     2.8  0.0002   18.8   8.4   47  325-371    59-105 (107)
 11 d1t98a2 a.47.6.1 (A:119-281) C  71.5     2.5 0.00018   19.2   4.2   68  301-373     9-76  (163)
 12 d1m7ka_ a.7.7.1 (A:) Silencer   71.1     1.5 0.00011   20.8   3.0   39  334-372     2-45  (81)
 13 d1fxkc_ a.2.5.1 (C:) Prefoldin  67.0     3.4 0.00025   18.2   7.5  103  261-373    24-130 (133)
 14 d1r8ea1 a.6.1.3 (A:3-120) Tran  66.8     3.4 0.00025   18.1   6.1   57  302-369    59-115 (118)
 15 d1seta1 a.2.7.1 (A:1-110) Sery  65.1     3.7 0.00027   17.9   5.8   31  334-364    67-97  (110)
 16 d2bdea1 c.108.1.23 (A:2-459) C  61.8     3.3 0.00024   18.2   3.2   34  341-374   370-403 (458)
 17 d1j2za_ b.81.1.1 (A:) UDP N-ac  61.1       2 0.00014   20.0   2.0   44  333-376   206-252 (259)
 18 d1ykhb1 a.252.1.1 (B:2-130) RN  59.5     4.5 0.00033   17.2   6.1   37  337-373    90-126 (129)
 19 d1kida_ c.8.5.1 (A:) GroEL, A   58.4     4.7 0.00034   17.0   4.4   33  341-373   157-191 (193)
 20 d1uk5a_ a.7.7.1 (A:) BAG-famil  58.0     4.8 0.00035   17.0   4.4   18  328-345    57-74  (111)
 21 d2e50a1 d.305.1.1 (A:1-222) Pr  56.3     5.1 0.00037   16.8   7.6   41  336-376    31-71  (222)
 22 d1ugoa_ a.7.7.1 (A:) BAG-famil  54.0     4.5 0.00033   17.2   2.8   40  306-345    23-62  (99)
 23 d2oc5a1 a.25.1.6 (A:20-241) Hy  52.2     5.9 0.00043   16.3   4.9   43  328-370    14-56  (222)
 24 d1sjpa2 c.8.5.1 (A:189-372) Gr  50.2     6.3 0.00046   16.1   4.4   32  341-372   149-182 (184)
 25 d1twfc1 d.74.3.1 (C:3-41,C:173  49.5     4.5 0.00033   17.2   2.2   25  335-359   110-134 (135)
 26 d1ydxa1 d.287.1.2 (A:1-193) Bi  48.6     6.6 0.00048   15.9   4.3   24  340-363   153-176 (193)
 27 d1zkea1 a.30.6.1 (A:1-79) Hypo  45.5     7.3 0.00053   15.6   3.1   24  340-363    52-75  (79)
 28 d1u5pa2 a.7.1.1 (A:1772-1872)   43.9     7.7 0.00056   15.4   6.3   38  338-375    31-68  (101)
 29 d1q06a_ a.6.1.3 (A:) Transcrip  38.3     9.2 0.00067   14.8   5.4   58  302-371    55-112 (127)
 30 d1cuna2 a.7.1.1 (A:116-219) Sp  35.5      10 0.00074   14.5   6.3   26  336-361    35-60  (104)
 31 d1hcia4 a.7.1.1 (A:633-746) al  35.1      10 0.00075   14.5   5.4   34  333-366    39-72  (114)
 32 d1slqa_ f.47.1.1 (A:) VP4 memb  34.3      11 0.00077   14.4   3.6   22  341-362   240-261 (270)
 33 d1s35a2 a.7.1.1 (A:1169-1273)   32.5      11 0.00082   14.2   6.4   34  339-372    34-67  (105)
 34 d1i5na_ a.24.10.3 (A:) Chemota  30.9      12 0.00087   14.0   3.9   69  302-374    58-126 (128)
 35 d1wu9a1 a.245.1.1 (A:191-249)   30.3      12 0.00088   13.9   4.0   23  339-361     2-24  (59)
 36 d1bjta_ e.11.1.1 (A:) DNA topo  30.1      12 0.00089   13.9   2.2   20  339-358   710-729 (760)
 37 d1o3xa_ a.7.8.1 (A:) ADP-ribos  29.4      13 0.00091   13.8   5.9   29  324-352    49-77  (112)
 38 d2c0sa1 a.30.7.1 (A:1-57) Hypo  27.4      14 0.00098   13.5   2.9   14  362-375    36-49  (57)
 39 d1u5pa1 a.7.1.1 (A:1662-1771)   27.2      14 0.00099   13.5   6.2   32  340-371    37-68  (110)
 40 d2clyb1 f.53.1.1 (B:4-123) ATP  27.0      14   0.001   13.5   3.8   29  337-365    91-119 (120)
 41 d1quua1 a.7.1.1 (A:1-124) alph  26.9      14   0.001   13.5   6.4   23  337-359    54-76  (124)
 42 d1s35a1 a.7.1.1 (A:1063-1168)   25.8      14   0.001   13.3   6.0   24  336-359    37-60  (106)
 43 d1ydxa2 d.287.1.2 (A:194-374)   25.8      14   0.001   13.3   6.0   35  338-372   139-173 (181)
 44 d1io1a_ e.32.1.1 (A:) Phase 1   25.8      14   0.001   13.3   6.2   22  337-358   353-374 (395)
 45 d1quua2 a.7.1.1 (A:125-248) al  25.4      15  0.0011   13.3   3.8   40  325-365    33-72  (124)
 46 d1b4fa_ a.60.1.2 (A:) EphB2 re  24.7      15  0.0011   13.2   2.2   27  325-351    47-73  (74)
 47 d2oa5a1 d.362.1.1 (A:7-102) Un  24.1      15  0.0011   13.1   2.7   22  338-359    57-78  (96)
 48 d1vp7a_ a.7.13.1 (A:) Exonucle  23.3      16  0.0012   13.0   5.6   46  321-372    23-68  (68)
 49 d1a0aa_ a.38.1.1 (A:) Pho4 B/H  23.3      15  0.0011   13.2   1.4   40  308-347    22-61  (63)
 50 d1x4ta1 a.2.15.1 (A:7-86) Pre-  23.3      16  0.0012   13.0   2.3   35  339-374    27-61  (80)
 51 d1yf2a1 d.287.1.2 (A:1-220) Bi  22.4      16  0.0012   12.9   6.1   32  341-372   172-203 (220)
 52 d1ux5a_ a.207.1.1 (A:) Bni1 {B  22.1      17  0.0012   12.8   5.2   36  330-365   329-364 (411)
 53 d1sd4a_ a.4.5.39 (A:) Penicill  21.8      14   0.001   13.5   1.0   47  304-358    73-120 (122)
 54 d1de4c1 a.48.2.1 (C:609-756) T  21.2      17  0.0013   12.7   1.5   31  332-362   100-135 (148)
 55 d1xppa_ d.74.3.2 (A:) DNA-dire  20.8      18  0.0013   12.7   4.6   32  332-363    66-97  (99)

No 1  
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=92.09  E-value=0.4  Score=25.28  Aligned_cols=60  Identities=12%  Similarity=0.072  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHEECCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8887663344106766031367775999999999999999999999999999999999998755
Q gi|254781130|r  308 NNLKEINEVFVDTIGGYLAPNPSVIIPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNTP  371 (378)
Q Consensus       308 qev~~v~p~~v~~~~~~~~~~~~~l~~~li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~  371 (378)
                      .++..++|.....    ..++-..+.-..++=|+.|.++++.|+.+++++.++.+.|+..++.|
T Consensus        26 ~~Lr~llP~~~~~----~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L   85 (88)
T d1nkpa_          26 FALRDQIPELENN----EKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQL   85 (88)
T ss_dssp             HHHHTTCGGGTTC----TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999867998787----76679999999999999999999999999999999999999999975


No 2  
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=91.01  E-value=0.51  Score=24.48  Aligned_cols=60  Identities=10%  Similarity=0.089  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHEECCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             88876633441067660313677759999999999999999999999999999999999987555
Q gi|254781130|r  308 NNLKEINEVFVDTIGGYLAPNPSVIIPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNTPL  372 (378)
Q Consensus       308 qev~~v~p~~v~~~~~~~~~~~~~l~~~li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~~  372 (378)
                      .++..++|..-.     ...+-..+.-..++=|++|.+++..|+++++++.++...|+..+..+.
T Consensus        22 ~~L~~llP~~~~-----~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L~   81 (83)
T d1nkpb_          22 HSLRDSVPSLQG-----EKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG   81 (83)
T ss_dssp             HHHHTTSGGGTT-----SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHCCCCC-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             999997577789-----988899999999999999999999999999999999999999998727


No 3  
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
Probab=86.17  E-value=1  Score=22.15  Aligned_cols=53  Identities=13%  Similarity=0.076  Sum_probs=37.3

Q ss_pred             HHHHHHHHHEECCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             88766334410676603136777599999999999999999999999999999999999
Q gi|254781130|r  309 NLKEINEVFVDTIGGYLAPNPSVIIPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQDM  367 (378)
Q Consensus       309 ev~~v~p~~v~~~~~~~~~~~~~l~~~li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~  367 (378)
                      ++..++|..      ..-.+-..+.-..|.-|++|.++++.|++++..++++++.++.+
T Consensus        27 ~L~~llP~~------~~k~~K~~iL~~a~~yI~~L~~~~~~L~~e~~~lk~~~~~~~~L   79 (80)
T d1am9a_          27 ELKDLVVGT------EAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKSKSL   79 (80)
T ss_dssp             HHHHHHTCS------SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHCCCCC------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             998327777------77788999999999999999999999999999999999986766


No 4  
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=83.51  E-value=1.3  Score=21.30  Aligned_cols=43  Identities=12%  Similarity=0.169  Sum_probs=36.2

Q ss_pred             ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             3677759999999999999999999999999999999999987
Q gi|254781130|r  327 PNPSVIIPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSN  369 (378)
Q Consensus       327 ~~~~~l~~~li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~  369 (378)
                      .+...+.-..|+=|++|..+++.|+.+++.+..+++.|+..+.
T Consensus        36 ~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~L~~~~~~L~~~l~   78 (79)
T d1nlwa_          36 HTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLE   78 (79)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             8899999999999999999999999999999999999998764


No 5  
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=79.50  E-value=1.8  Score=20.30  Aligned_cols=49  Identities=18%  Similarity=0.013  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHEECCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8887663344106766031367775999999999999999999999999999999
Q gi|254781130|r  308 NNLKEINEVFVDTIGGYLAPNPSVIIPHLAKAIQELLQEVKELRDMIDKQNEEHQ  362 (378)
Q Consensus       308 qev~~v~p~~v~~~~~~~~~~~~~l~~~li~aiqel~~~i~~l~~~i~~~~~~~~  362 (378)
                      ++++.++|..-      .-.+-..+.--.|+=|+.|..+++.|+++...+.++.+
T Consensus         9 ~~L~~lvP~~~------~K~~Ka~iL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~   57 (61)
T d1uklc_           9 IELKDLVMGTD------AKMHKSGVLRKAIDYIKYLQQVNHKLRQENMVLKLANQ   57 (61)
T ss_dssp             HHHHHHHSCSS------CCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99996689998------76669999999999999999999999999999999997


No 6  
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=77.03  E-value=2.1  Score=19.79  Aligned_cols=35  Identities=9%  Similarity=0.109  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999998755543
Q gi|254781130|r  340 IQELLQEVKELRDMIDKQNEEHQDVQDMSNTPLNS  374 (378)
Q Consensus       340 iqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~~~~  374 (378)
                      +|.|+++++.|+.+-.++++.++.+++.+.-+...
T Consensus         3 ~~~L~~El~~L~~~E~~LD~li~~~~~~L~~lted   37 (101)
T d2azeb1           3 LEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSED   37 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             67999999999999999999999999999996526


No 7  
>d1q08a_ a.6.1.3 (A:) Transcriptional regulator ZntR {Escherichia coli [TaxId: 562]}
Probab=75.16  E-value=2.3  Score=19.43  Aligned_cols=60  Identities=15%  Similarity=0.253  Sum_probs=37.2

Q ss_pred             EEEEEEHHHHHHHHHHHEECCC-CCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             0232557888766334410676-60313677759999999999999999999999999999999999987555
Q gi|254781130|r  301 YLIGFSENNLKEINEVFVDTIG-GYLAPNPSVIIPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNTPL  372 (378)
Q Consensus       301 ~~~G~iAqev~~v~p~~v~~~~-~~~~~~~~~l~~~li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~~  372 (378)
                      ++.||-=.|+++++.-..+... ..     ..     ++  +-+.+++++++++|.++++-...|+++....+
T Consensus        13 r~lGFsL~EI~~ll~l~~~~~~~~c-----~~-----v~--~l~~~kl~~i~~kI~~L~~l~~~L~~l~~~c~   73 (94)
T d1q08a_          13 RQLGFSLESIRELLSIRIDPEHHTC-----QE-----SK--GIVQERLQEVEARIAELQSMQRSLQRLNDACC   73 (94)
T ss_dssp             HHTTCCHHHHHHHHHHHHCGGGCBH-----HH-----HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHCCCCHHHHHHHHHHCCCCCCCCH-----HH-----HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             9979989999999985338886769-----99-----99--99999999999999999999999999997377


No 8  
>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]}
Probab=73.51  E-value=1.5  Score=20.90  Aligned_cols=31  Identities=16%  Similarity=0.242  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             9999999999999999999999875554311
Q gi|254781130|r  346 EVKELRDMIDKQNEEHQDVQDMSNTPLNSQK  376 (378)
Q Consensus       346 ~i~~l~~~i~~~~~~~~~l~~~~~~~~~~~~  376 (378)
                      ..+++.++|+++.+...++|+++.-+..|+|
T Consensus       228 ~l~~~~~~l~~~~~~~~~v~~~i~Fi~~s~r  258 (262)
T d2jf2a1         228 TLDEVKPEIAELAETYPEVKAFTDFFARSTR  258 (262)
T ss_dssp             CHHHHHHHHHHHHTTCGGGHHHHHHHHHCCS
T ss_pred             CHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC
T ss_conf             7999999998650288999999999974889


No 9  
>d2p90a1 c.56.8.1 (A:6-274) Hypothetical protein Cgl1923 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=71.82  E-value=2.1  Score=19.83  Aligned_cols=68  Identities=19%  Similarity=0.265  Sum_probs=42.4

Q ss_pred             EEEEHHHHHHHHHHHE----ECCCCCE--EECHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             3255788876633441----0676603--136777599999999----------99999999999999999999999999
Q gi|254781130|r  303 IGFSENNLKEINEVFV----DTIGGYL--APNPSVIIPHLAKAI----------QELLQEVKELRDMIDKQNEEHQDVQD  366 (378)
Q Consensus       303 ~G~iAqev~~v~p~~v----~~~~~~~--~~~~~~l~~~li~ai----------qel~~~i~~l~~~i~~~~~~~~~l~~  366 (378)
                      .|++++++.+--...+    ..+ .|.  ..|+.. ...|++++          .+|.++.++.+++|+++.++.++|++
T Consensus       175 ~g~l~~~~~~~gi~~i~l~a~vp-~y~~~~pdP~A-A~~lL~~l~~~~gl~id~~~L~e~Ae~~e~~i~~l~e~~~e~~~  252 (269)
T d2p90a1         175 SLMLEKLLKDKGKNVSGYTVHVP-HYVSASPYPAA-TLKLLQSIADSADLNLPLLALERDAEKVHRQLMEQTEESSEIQR  252 (269)
T ss_dssp             HHHHHHHHHHTTCCEEEEEEEEE-GGGTTSCCHHH-HHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHHHCCCCEEEEEEECC-CCCCCCCCHHH-HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_conf             99999999965998179999767-52368998799-99999999998789999088999999999999999862879999


Q ss_pred             HHHHHH
Q ss_conf             987555
Q gi|254781130|r  367 MSNTPL  372 (378)
Q Consensus       367 ~~~~~~  372 (378)
                      ++..|-
T Consensus       253 ~v~~LE  258 (269)
T d2p90a1         253 VVGALE  258 (269)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
T ss_conf             999999


No 10 
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=71.62  E-value=2.8  Score=18.84  Aligned_cols=47  Identities=11%  Similarity=0.121  Sum_probs=32.3

Q ss_pred             EEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             31367775999999999999999999999999999999999998755
Q gi|254781130|r  325 LAPNPSVIIPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNTP  371 (378)
Q Consensus       325 ~~~~~~~l~~~li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~  371 (378)
                      .-.+...+.|-|-+-+..+..+|+.|++.+..+.++..++++-....
T Consensus        59 v~~~~~e~~~~l~~~~e~l~~~i~~l~~q~~~l~~~l~~~~~~l~~~  105 (107)
T d1fxka_          59 IRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQEA  105 (107)
T ss_dssp             EEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             30739999999999999999999999999999999999999999997


No 11 
>d1t98a2 a.47.6.1 (A:119-281) Chromosome partition protein MukF (KicB), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=71.52  E-value=2.5  Score=19.18  Aligned_cols=68  Identities=15%  Similarity=0.225  Sum_probs=50.4

Q ss_pred             EEEEEEHHHHHHHHHHHEECCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             0232557888766334410676603136777599999999999999999999999999999999999875554
Q gi|254781130|r  301 YLIGFSENNLKEINEVFVDTIGGYLAPNPSVIIPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNTPLN  373 (378)
Q Consensus       301 ~~~G~iAqev~~v~p~~v~~~~~~~~~~~~~l~~~li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~~~  373 (378)
                      .+.+..|+|+++....+-+..+++.+-  ..+.++|--.|-|+-..|+--+-.++||+++   +|+.+..|||
T Consensus         9 iqls~va~el~~a~~aA~~~~de~~Wr--~~V~apLkySVaeifd~Idl~QR~mDeQQ~~---Vk~eIA~LL~   76 (163)
T d1t98a2           9 MQLSIVAGELKRAADAAEEGGDEFHWH--RNVYAPLKYSVAEIFDSIDLTQRLMDEQQQQ---VKDDIAQLLN   76 (163)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCCHHHHH--HHTHHHHHHTHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHH--HHHHHHHHEEHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_conf             999999999999999998569878898--7511344221999984650888867878999---9999999997


No 12 
>d1m7ka_ a.7.7.1 (A:) Silencer of death domains, Sodd (Bag4) {Human (Homo sapiens) [TaxId: 9606]}
Probab=71.05  E-value=1.5  Score=20.78  Aligned_cols=39  Identities=21%  Similarity=0.319  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999-----9999999999987555
Q gi|254781130|r  334 PHLAKAIQELLQEVKELRDMIDK-----QNEEHQDVQDMSNTPL  372 (378)
Q Consensus       334 ~~li~aiqel~~~i~~l~~~i~~-----~~~~~~~l~~~~~~~~  372 (378)
                      |+-+++|++..+++.+|+.+|+.     ..++...|-+|+-++|
T Consensus         2 ~p~~~~I~~i~~~v~~l~~~V~~f~g~~~dke~~~L~E~L~~~l   45 (81)
T d1m7ka_           2 PPSIKKIIHVLEKVQYLEQEVEEFVGKKTDKAYWLLEEMLTKEL   45 (81)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf             76889999999999999999998738753189999999999999


No 13 
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=67.04  E-value=3.4  Score=18.16  Aligned_cols=103  Identities=15%  Similarity=0.176  Sum_probs=63.2

Q ss_pred             HHHHHHHHCCCCCHHHHHHHHHCCEEEEECCCCCCCCCCCEEEE---EEHHHHHHHHHHHEECCCC-CEEECHHHHHHHH
Q ss_conf             37766421114520778986207258885354577854340232---5578887663344106766-0313677759999
Q gi|254781130|r  261 DERLKKVHGESSASAREIIEQLKFIDFNYLPESGMDSELRYLIG---FSENNLKEINEVFVDTIGG-YLAPNPSVIIPHL  336 (378)
Q Consensus       261 D~rlK~~i~~~~~~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~G---~iAqev~~v~p~~v~~~~~-~~~~~~~~l~~~l  336 (378)
                      -++++..+.+.. .+.+.|+.|.-.     .    ..+....+|   |+--++...-.-+|.-..| |...+...-+.++
T Consensus        24 i~~l~~~~~e~~-~~~~~L~~l~~~-----~----~~e~lvplg~~~~v~~~i~~~~~vlV~lG~g~~vE~~~~eA~~~l   93 (133)
T d1fxkc_          24 MEAVRATISELE-ILEKTLSDIQGK-----D----GSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAIKKNFEDAMESI   93 (133)
T ss_dssp             HHHHHHHHHHHH-HHHHHHHHHTTC-----T----TCEEEEEEETTEEEEEECCSTTEEEEEEETTEEEEEEHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHCC-----C----CCEEEEECCCCEEEEEEECCCCCEEEEECCCEEEEECHHHHHHHH
T ss_conf             999999999999-999999976227-----8----970799747853888786389864888359823550599999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999999999999875554
Q gi|254781130|r  337 AKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNTPLN  373 (378)
Q Consensus       337 i~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~~~  373 (378)
                      -+-+++|...++.|++++...++.++.++..+..++-
T Consensus        94 ~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~~~l~~  130 (133)
T d1fxkc_          94 KSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLA  130 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999999999999999999987


No 14 
>d1r8ea1 a.6.1.3 (A:3-120) Transcription activator BmrR {Bacillus subtilis [TaxId: 1423]}
Probab=66.76  E-value=3.4  Score=18.12  Aligned_cols=57  Identities=7%  Similarity=0.131  Sum_probs=30.9

Q ss_pred             EEEEEHHHHHHHHHHHEECCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             23255788876633441067660313677759999999999999999999999999999999999987
Q gi|254781130|r  302 LIGFSENNLKEINEVFVDTIGGYLAPNPSVIIPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSN  369 (378)
Q Consensus       302 ~~G~iAqev~~v~p~~v~~~~~~~~~~~~~l~~~li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~  369 (378)
                      ..||-=+|+++++.           .+...+...+-+..+++.++++.|+...+.+....+.|++.+.
T Consensus        59 ~~g~sl~eIk~~l~-----------~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~l~~~~e  115 (118)
T d1r8ea1          59 YIGTPLEEMKKAQD-----------LEMEELFAFYTEQERQIREKLDFLSALEQTISLVKKRMKRQME  115 (118)
T ss_dssp             HTTCCHHHHHHHTT-----------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HCCCCHHHHHHHHC-----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             96999999999981-----------6889999999999999999999999999999999999988863


No 15 
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=65.08  E-value=3.7  Score=17.89  Aligned_cols=31  Identities=16%  Similarity=0.224  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999999999999
Q gi|254781130|r  334 PHLAKAIQELLQEVKELRDMIDKQNEEHQDV  364 (378)
Q Consensus       334 ~~li~aiqel~~~i~~l~~~i~~~~~~~~~l  364 (378)
                      ..|++.+++|.++|++|++++.+..++++.+
T Consensus        67 ~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~   97 (110)
T d1seta1          67 EALIARGKALGEEAKRLEEALREKEARLEAL   97 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999988889999999999999999999999


No 16 
>d2bdea1 c.108.1.23 (A:2-459) Cytosolic IMP-GMP specific 5'-nucleotidase {Legionella pneumophila [TaxId: 446]}
Probab=61.82  E-value=3.3  Score=18.23  Aligned_cols=34  Identities=21%  Similarity=0.203  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999999998755543
Q gi|254781130|r  341 QELLQEVKELRDMIDKQNEEHQDVQDMSNTPLNS  374 (378)
Q Consensus       341 qel~~~i~~l~~~i~~~~~~~~~l~~~~~~~~~~  374 (378)
                      |+..+++++|+.++++.+++++++.+.+..+-|.
T Consensus       370 ~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~fn~  403 (458)
T d2bdea1         370 QQYDQEIHDLQLQISTVDLQISRLLQEQNSFYNP  403 (458)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             4204899999999999999999999999877161


No 17 
>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]}
Probab=61.11  E-value=2  Score=19.95  Aligned_cols=44  Identities=23%  Similarity=0.336  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHC
Q ss_conf             99999999999999999999999999999---999999875554311
Q gi|254781130|r  333 IPHLAKAIQELLQEVKELRDMIDKQNEEH---QDVQDMSNTPLNSQK  376 (378)
Q Consensus       333 ~~~li~aiqel~~~i~~l~~~i~~~~~~~---~~l~~~~~~~~~~~~  376 (378)
                      ++.|.+++++|..+.+.|++.++++.++.   .++|++.+-+-.|+|
T Consensus       206 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fi~~s~r  252 (259)
T d1j2za_         206 IDFIYALYKRLFRPIPSLRESAKLELEEHANNPFVKEICSFILESSR  252 (259)
T ss_dssp             HHHHHHHHHHHTCSSSCHHHHHHHHHHHTSSCHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC
T ss_conf             99999999999845877999999998764699999999999970899


No 18 
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=59.47  E-value=4.5  Score=17.18  Aligned_cols=37  Identities=11%  Similarity=0.168  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999999999999875554
Q gi|254781130|r  337 AKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNTPLN  373 (378)
Q Consensus       337 i~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~~~  373 (378)
                      .+-|+||.++.++...+..+.-++.+.|-+++..++.
T Consensus        90 ~~~i~~Le~E~~~~~~el~~~v~e~e~ll~~i~~~i~  126 (129)
T d1ykhb1          90 LRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSMIE  126 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999999999999999999999


No 19 
>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]}
Probab=58.35  E-value=4.7  Score=17.04  Aligned_cols=33  Identities=12%  Similarity=0.268  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999--9999999999875554
Q gi|254781130|r  341 QELLQEVKELRDMIDKQ--NEEHQDVQDMSNTPLN  373 (378)
Q Consensus       341 qel~~~i~~l~~~i~~~--~~~~~~l~~~~~~~~~  373 (378)
                      .++.++|+.|+.+++..  ..+.+.|++|+.+|..
T Consensus       157 ~~I~~Ri~~Lk~~l~~~~~~~~~e~L~eRlakLsG  191 (193)
T d1kida_         157 AAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAG  191 (193)
T ss_dssp             HHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf             99999999999999986899999999999998747


No 20 
>d1uk5a_ a.7.7.1 (A:) BAG-family molecular chaperone regulator-3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=57.99  E-value=4.8  Score=17.00  Aligned_cols=18  Identities=22%  Similarity=0.095  Sum_probs=9.1

Q ss_pred             CHHHHHHHHHHHHHHHHH
Q ss_conf             677759999999999999
Q gi|254781130|r  328 NPSVIIPHLAKAIQELLQ  345 (378)
Q Consensus       328 ~~~~l~~~li~aiqel~~  345 (378)
                      .|-.|.-+|.+-+=+|+.
T Consensus        57 ey~~L~E~L~~~LlkLD~   74 (111)
T d1uk5a_          57 KYLMIEEYLTKELLALDS   74 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHCC
T ss_conf             999999999999998667


No 21 
>d2e50a1 d.305.1.1 (A:1-222) Protein SET {Human (Homo sapiens) [TaxId: 9606]}
Probab=56.30  E-value=5.1  Score=16.80  Aligned_cols=41  Identities=12%  Similarity=0.219  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99999999999999999999999999999999875554311
Q gi|254781130|r  336 LAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNTPLNSQK  376 (378)
Q Consensus       336 li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~~~~~~  376 (378)
                      .|+++++++.+++.|+.+..+...+++.=-+....|+-.+|
T Consensus        31 ~i~~L~~iQ~e~~~l~~e~~~e~~~le~k~~~~~~ply~~R   71 (222)
T d2e50a1          31 AIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKR   71 (222)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999999866699998


No 22 
>d1ugoa_ a.7.7.1 (A:) BAG-family molecular chaperone regulator-5, BAG-5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=54.03  E-value=4.5  Score=17.22  Aligned_cols=40  Identities=20%  Similarity=0.087  Sum_probs=17.4

Q ss_pred             EHHHHHHHHHHHEECCCCCEEECHHHHHHHHHHHHHHHHH
Q ss_conf             5788876633441067660313677759999999999999
Q gi|254781130|r  306 SENNLKEINEVFVDTIGGYLAPNPSVIIPHLAKAIQELLQ  345 (378)
Q Consensus       306 iAqev~~v~p~~v~~~~~~~~~~~~~l~~~li~aiqel~~  345 (378)
                      |..||.++-|+...-.+-.....|-.|.-.|.+-+=+|+.
T Consensus        23 i~~ev~~L~~~V~~f~~~~~dke~~~L~E~L~~~LlkLD~   62 (99)
T d1ugoa_          23 IQREVKAIEPQVVGFSGLSDDKNYKRLERILTKQLFEIDS   62 (99)
T ss_dssp             HHHHHHHSHHHHHTCCCCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf             9999999999999982766429999999999999998667


No 23 
>d2oc5a1 a.25.1.6 (A:20-241) Hypothetical protein PMT1231 {Prochlorococcus marinus [TaxId: 1219]}
Probab=52.16  E-value=5.9  Score=16.33  Aligned_cols=43  Identities=16%  Similarity=0.117  Sum_probs=20.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             6777599999999999999999999999999999999999875
Q gi|254781130|r  328 NPSVIIPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNT  370 (378)
Q Consensus       328 ~~~~l~~~li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~  370 (378)
                      .|+++-...|+.=||..+-.-.|-++|-++++|...|-+|-++
T Consensus        14 AYSRINaIVIEGEqeA~~Nyi~la~llP~~~dEL~rLakME~r   56 (222)
T d2oc5a1          14 AYSRINAIVIEGEQEAHDNYIAIGTLLPDHVEELKRLAKMEMR   56 (222)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHEEEEECHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf             9987401557350878886999998782218999999999988


No 24 
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]}
Probab=50.16  E-value=6.3  Score=16.11  Aligned_cols=32  Identities=13%  Similarity=0.266  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Q ss_conf             99999999999999999--999999999987555
Q gi|254781130|r  341 QELLQEVKELRDMIDKQ--NEEHQDVQDMSNTPL  372 (378)
Q Consensus       341 qel~~~i~~l~~~i~~~--~~~~~~l~~~~~~~~  372 (378)
                      .+..++|++|+.+++..  ..+.+.||+|..+|.
T Consensus       149 ~~I~~Ri~~Lk~~l~~~~~~~e~~~L~eRLAkLs  182 (184)
T d1sjpa2         149 DAIAGRVAQIRQEIENSDSDYDREKLQERLAKLA  182 (184)
T ss_dssp             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf             9999999999999997589989999999999863


No 25 
>d1twfc1 d.74.3.1 (C:3-41,C:173-268) RPB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=49.53  E-value=4.5  Score=17.21  Aligned_cols=25  Identities=12%  Similarity=0.259  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999999
Q gi|254781130|r  335 HLAKAIQELLQEVKELRDMIDKQNE  359 (378)
Q Consensus       335 ~li~aiqel~~~i~~l~~~i~~~~~  359 (378)
                      ++.+||+.|+.|.+.|..++++..+
T Consensus       110 Iv~~ai~iL~~Kl~~l~~~L~~~dq  134 (135)
T d1twfc1         110 VVVRGIDTLQKKVASILLALTQMDQ  134 (135)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             9999999999999999999988753


No 26 
>d1ydxa1 d.287.1.2 (A:1-193) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]}
Probab=48.57  E-value=6.6  Score=15.94  Aligned_cols=24  Identities=8%  Similarity=0.279  Sum_probs=10.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999999
Q gi|254781130|r  340 IQELLQEVKELRDMIDKQNEEHQD  363 (378)
Q Consensus       340 iqel~~~i~~l~~~i~~~~~~~~~  363 (378)
                      ++.+.++|+.++++++.+++..+.
T Consensus       153 l~~ld~~i~~~~~~i~~l~~~~~~  176 (193)
T d1ydxa1         153 LSVFDERLENLASLIEINRKLRDE  176 (193)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999999999


No 27 
>d1zkea1 a.30.6.1 (A:1-79) Hypothetical protein HP1531 {Helicobacter pylori [TaxId: 210]}
Probab=45.53  E-value=7.3  Score=15.60  Aligned_cols=24  Identities=25%  Similarity=0.498  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999999
Q gi|254781130|r  340 IQELLQEVKELRDMIDKQNEEHQD  363 (378)
Q Consensus       340 iqel~~~i~~l~~~i~~~~~~~~~  363 (378)
                      .|.++++|+.||+.|+.+++-..+
T Consensus        52 l~qid~ev~kLK~~IdaLNKiKke   75 (79)
T d1zkea1          52 FTQLSEEVERLKELINALNKIKKG   75 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             998899999999999999999888


No 28 
>d1u5pa2 a.7.1.1 (A:1772-1872) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=43.91  E-value=7.7  Score=15.43  Aligned_cols=38  Identities=18%  Similarity=0.230  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999987555431
Q gi|254781130|r  338 KAIQELLQEVKELRDMIDKQNEEHQDVQDMSNTPLNSQ  375 (378)
Q Consensus       338 ~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~~~~~  375 (378)
                      .+++.|..+-+.++..|......+..|.++-..++-+.
T Consensus        31 ~~~~~ll~~h~~~~~~i~~~~~~~~~l~~~~~~l~~~~   68 (101)
T d1u5pa2          31 TGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDN   68 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99999999999999999981889999999999997709


No 29 
>d1q06a_ a.6.1.3 (A:) Transcriptional regulator CueR {Escherichia coli [TaxId: 562]}
Probab=38.35  E-value=9.2  Score=14.82  Aligned_cols=58  Identities=19%  Similarity=0.296  Sum_probs=29.1

Q ss_pred             EEEEEHHHHHHHHHHHEECCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             2325578887663344106766031367775999999999999999999999999999999999998755
Q gi|254781130|r  302 LIGFSENNLKEINEVFVDTIGGYLAPNPSVIIPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNTP  371 (378)
Q Consensus       302 ~~G~iAqev~~v~p~~v~~~~~~~~~~~~~l~~~li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~  371 (378)
                      ..||-=.|+++++.-.-.....            +....+-+.+++++|+++|.+++...+.|.++....
T Consensus        55 ~~G~sl~eI~~~l~~~~~~~~~------------~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~l~~~~  112 (127)
T d1q06a_          55 QVGFNLEESGELVNLFNDPQRH------------SADVKRRTLEKVAEIERHIEELQSMRDQLLALANAC  112 (127)
T ss_dssp             HTTCCHHHHHHHHHHHHCTTCC------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HCCCCHHHHHHHHHHHCCCCCC------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             8699999999999725168874------------799999999999999999999999999999999858


No 30 
>d1cuna2 a.7.1.1 (A:116-219) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=35.49  E-value=10  Score=14.50  Aligned_cols=26  Identities=12%  Similarity=0.144  Sum_probs=10.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999
Q gi|254781130|r  336 LAKAIQELLQEVKELRDMIDKQNEEH  361 (378)
Q Consensus       336 li~aiqel~~~i~~l~~~i~~~~~~~  361 (378)
                      |++.-+++..+|+..+.+++.+.+.-
T Consensus        35 ll~~h~~~~~ei~~~~~~~~~l~~~g   60 (104)
T d1cuna2          35 LLKKHEAFETDFTVHKDRVNDVCANG   60 (104)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999998189999999999


No 31 
>d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.14  E-value=10  Score=14.46  Aligned_cols=34  Identities=18%  Similarity=0.366  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999999999999999
Q gi|254781130|r  333 IPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQD  366 (378)
Q Consensus       333 ~~~li~aiqel~~~i~~l~~~i~~~~~~~~~l~~  366 (378)
                      +..+++..|.+..+|...+.+|+...+.-++|.+
T Consensus        39 ve~~l~~h~~~e~el~~~~~~i~~l~~~g~~L~~   72 (114)
T d1hcia4          39 LEDQMNQLKQYEHNIINYKNNIDKLEGDHQLIQE   72 (114)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999879999999999999877


No 32 
>d1slqa_ f.47.1.1 (A:) VP4 membrane interaction domain {Rhesus rotavirus [TaxId: 10969]}
Probab=34.26  E-value=11  Score=14.36  Aligned_cols=22  Identities=27%  Similarity=0.433  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999
Q gi|254781130|r  341 QELLQEVKELRDMIDKQNEEHQ  362 (378)
Q Consensus       341 qel~~~i~~l~~~i~~~~~~~~  362 (378)
                      |.|..++.+|+++++++.+|+.
T Consensus       240 qDLErqi~dLr~efN~ls~eia  261 (270)
T d1slqa_         240 QDLERQLGELREEFNALSQEIA  261 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
T ss_conf             8799999999999999999878


No 33 
>d1s35a2 a.7.1.1 (A:1169-1273) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.48  E-value=11  Score=14.16  Aligned_cols=34  Identities=9%  Similarity=0.183  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999999999987555
Q gi|254781130|r  339 AIQELLQEVKELRDMIDKQNEEHQDVQDMSNTPL  372 (378)
Q Consensus       339 aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~~  372 (378)
                      .++.|..+-+.|+..|....+.+..|.++-..+.
T Consensus        34 ~v~~l~k~h~~l~~~l~~~~~~v~~l~~~a~~L~   67 (105)
T d1s35a2          34 AAEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLV   67 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999998799999999986999998999999984


No 34 
>d1i5na_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain {Salmonella typhimurium [TaxId: 90371]}
Probab=30.94  E-value=12  Score=13.98  Aligned_cols=69  Identities=4%  Similarity=0.039  Sum_probs=40.6

Q ss_pred             EEEEEHHHHHHHHHHHEECCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             2325578887663344106766031367775999999999999999999999999999999999998755543
Q gi|254781130|r  302 LIGFSENNLKEINEVFVDTIGGYLAPNPSVIIPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNTPLNS  374 (378)
Q Consensus       302 ~~G~iAqev~~v~p~~v~~~~~~~~~~~~~l~~~li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~~~~  374 (378)
                      .++-+|++++.++..+-+.   ...++ ..++.+|.+++..|...++.++..-.......+.|.+....+..+
T Consensus        58 ~i~~lah~lE~~l~~lr~~---~~~~~-~~~~~~l~~~~d~l~~~l~~~~~~~~~~~~~~~~l~~~L~~l~~e  126 (128)
T d1i5na_          58 ILQETTHLMENLLDEARRG---EMQLN-TDIINLFLETKDIMQEQLDAYKNSEEPDAASFEYICNALRQLALE  126 (128)
T ss_dssp             HHHHHHHHHHHHHHHHHTT---SSCCC-HHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHC---CCCCC-HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf             9999999999999999838---98989-999999999999999999998748999954599999999987626


No 35 
>d1wu9a1 a.245.1.1 (A:191-249) Microtubule-associated protein EB1, C-terminal dimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.30  E-value=12  Score=13.90  Aligned_cols=23  Identities=26%  Similarity=0.424  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999
Q gi|254781130|r  339 AIQELLQEVKELRDMIDKQNEEH  361 (378)
Q Consensus       339 aiqel~~~i~~l~~~i~~~~~~~  361 (378)
                      -+.||.+++.+|+..|+.+.++.
T Consensus         2 e~~~L~~ei~elk~~v~~lEkER   24 (59)
T d1wu9a1           2 EAAELMQQVNVLKLTVEDLEKER   24 (59)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             88899999999999999999999


No 36 
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment (residues 410-1202) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=30.09  E-value=12  Score=13.88  Aligned_cols=20  Identities=20%  Similarity=0.255  Sum_probs=9.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999
Q gi|254781130|r  339 AIQELLQEVKELRDMIDKQN  358 (378)
Q Consensus       339 aiqel~~~i~~l~~~i~~~~  358 (378)
                      .++||.+++++|+++++++.
T Consensus       710 ei~kL~~E~~~l~~Ei~~L~  729 (760)
T d1bjta_         710 RYQKLLKQKQEKETELENLL  729 (760)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999997


No 37 
>d1o3xa_ a.7.8.1 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.38  E-value=13  Score=13.79  Aligned_cols=29  Identities=10%  Similarity=0.093  Sum_probs=14.1

Q ss_pred             CEEECHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             03136777599999999999999999999
Q gi|254781130|r  324 YLAPNPSVIIPHLAKAIQELLQEVKELRD  352 (378)
Q Consensus       324 ~~~~~~~~l~~~li~aiqel~~~i~~l~~  352 (378)
                      ...++-..++--|...++.++.+|..|-+
T Consensus        49 ~~~~~~~ell~eL~~~c~~~qp~i~~li~   77 (112)
T d1o3xa_          49 AAAGSSEDLMKELYQRCERMRPTLFRLAS   77 (112)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             88602679999999999999999999986


No 38 
>d2c0sa1 a.30.7.1 (A:1-57) Hypothetical protein BAS4809, C-terminal domain {Bacillus anthracis [TaxId: 1392]}
Probab=27.40  E-value=14  Score=13.54  Aligned_cols=14  Identities=14%  Similarity=0.283  Sum_probs=7.7

Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             99999987555431
Q gi|254781130|r  362 QDVQDMSNTPLNSQ  375 (378)
Q Consensus       362 ~~l~~~~~~~~~~~  375 (378)
                      |+|+.++|+..+.+
T Consensus        36 QELD~LIN~~m~~k   49 (57)
T d2c0sa1          36 QELDRLLNLLIELK   49 (57)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
T ss_conf             99999999999884


No 39 
>d1u5pa1 a.7.1.1 (A:1662-1771) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=27.24  E-value=14  Score=13.53  Aligned_cols=32  Identities=16%  Similarity=0.327  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999998755
Q gi|254781130|r  340 IQELLQEVKELRDMIDKQNEEHQDVQDMSNTP  371 (378)
Q Consensus       340 iqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~  371 (378)
                      ++.+..+-+.++.+|+.....+..|.+.-..+
T Consensus        37 ~~~~~~~h~~~~~ei~~~~~~i~~l~~~~~~L   68 (110)
T d1u5pa1          37 VNNLLKKHQLLEADISAHEDRLKDLNSQADSL   68 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999998067999999999998


No 40 
>d2clyb1 f.53.1.1 (B:4-123) ATP synthase subunit d, mitochondrial {Cow (Bos taurus) [TaxId: 9913]}
Probab=27.04  E-value=14  Score=13.50  Aligned_cols=29  Identities=7%  Similarity=0.190  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999
Q gi|254781130|r  337 AKAIQELLQEVKELRDMIDKQNEEHQDVQ  365 (378)
Q Consensus       337 i~aiqel~~~i~~l~~~i~~~~~~~~~l~  365 (378)
                      -+++++..+-+++.+.+|.+++++++.|+
T Consensus        91 ~e~~~~~~~~~~~s~~rI~~lekeLe~ik  119 (120)
T d2clyb1          91 KEDVKSCAEFLTQSKTRIQEYEKELEKMR  119 (120)
T ss_dssp             HHHHHTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             99999999999999999999999999851


No 41 
>d1quua1 a.7.1.1 (A:1-124) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.93  E-value=14  Score=13.49  Aligned_cols=23  Identities=4%  Similarity=0.173  Sum_probs=7.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999
Q gi|254781130|r  337 AKAIQELLQEVKELRDMIDKQNE  359 (378)
Q Consensus       337 i~aiqel~~~i~~l~~~i~~~~~  359 (378)
                      ++..+++...|...+.+|+...+
T Consensus        54 ~~~h~~~~~~i~~~~~~v~~l~~   76 (124)
T d1quua1          54 LRKHEAFESDLAAHQDRVEQIAA   76 (124)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999971899999999


No 42 
>d1s35a1 a.7.1.1 (A:1063-1168) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.83  E-value=14  Score=13.35  Aligned_cols=24  Identities=17%  Similarity=0.246  Sum_probs=8.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999999
Q gi|254781130|r  336 LAKAIQELLQEVKELRDMIDKQNE  359 (378)
Q Consensus       336 li~aiqel~~~i~~l~~~i~~~~~  359 (378)
                      +++..+++..+|+..+..++...+
T Consensus        37 ~l~~h~~l~~ei~~~~~~~~~~~~   60 (106)
T d1s35a1          37 LLQQHAGIKDEIDGHQDSYQRVKE   60 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999888878999999999


No 43 
>d1ydxa2 d.287.1.2 (A:194-374) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]}
Probab=25.82  E-value=14  Score=13.34  Aligned_cols=35  Identities=17%  Similarity=0.136  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999987555
Q gi|254781130|r  338 KAIQELLQEVKELRDMIDKQNEEHQDVQDMSNTPL  372 (378)
Q Consensus       338 ~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~~  372 (378)
                      +.-++..+.++.+.++|++++++++.|+++-..++
T Consensus       139 ~eQ~~I~~~l~~~d~~i~~~~~~i~~l~~lk~~Ll  173 (181)
T d1ydxa2         139 QLQRKAGKIVFLLDQKLDQYKKELSSLTVIRDTLL  173 (181)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999999999


No 44 
>d1io1a_ e.32.1.1 (A:) Phase 1 flagellin {Salmonella typhimurium [TaxId: 90371]}
Probab=25.78  E-value=14  Score=13.34  Aligned_cols=22  Identities=23%  Similarity=0.311  Sum_probs=10.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999
Q gi|254781130|r  337 AKAIQELLQEVKELRDMIDKQN  358 (378)
Q Consensus       337 i~aiqel~~~i~~l~~~i~~~~  358 (378)
                      |+.|-+..++|...+.+|--.+
T Consensus       353 l~~iD~Ai~~v~~~Ra~lGA~q  374 (395)
T d1io1a_         353 LQKIDAALAQVDTLRSDLAAVQ  374 (395)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999998755698


No 45 
>d1quua2 a.7.1.1 (A:125-248) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.38  E-value=15  Score=13.29  Aligned_cols=40  Identities=13%  Similarity=0.097  Sum_probs=17.6

Q ss_pred             EEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             31367775999999999999999999999999999999999
Q gi|254781130|r  325 LAPNPSVIIPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQ  365 (378)
Q Consensus       325 ~~~~~~~l~~~li~aiqel~~~i~~l~~~i~~~~~~~~~l~  365 (378)
                      ++-+... +-.|++--+++..+|...+.+|+...+..+.|.
T Consensus        33 ~g~dl~~-v~~ll~kh~~fe~el~~~~~~v~~l~~~~~~L~   72 (124)
T d1quua2          33 IVHSIEE-IQSLITAHEQFKATLPEADGERQSIMAIQNEVE   72 (124)
T ss_dssp             CCCSTTT-HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             6889999-999999999999989999879999999999999


No 46 
>d1b4fa_ a.60.1.2 (A:) EphB2 receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.74  E-value=15  Score=13.20  Aligned_cols=27  Identities=7%  Similarity=0.140  Sum_probs=15.8

Q ss_pred             EEECHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             313677759999999999999999999
Q gi|254781130|r  325 LAPNPSVIIPHLAKAIQELLQEVKELR  351 (378)
Q Consensus       325 ~~~~~~~l~~~li~aiqel~~~i~~l~  351 (378)
                      ++|.--.-.--++++|++|.++++++|
T Consensus        47 lGI~~~ghr~ril~~i~~Lr~~~~~~~   73 (74)
T d1b4fa_          47 VGVTLAGHQKKILNSIQVMRAQMNQIQ   73 (74)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             399974599999999999999998733


No 47 
>d2oa5a1 d.362.1.1 (A:7-102) Uncharacterized protein BQLF2 {Murid herpesvirus 4 [TaxId: 33708]}
Probab=24.13  E-value=15  Score=13.12  Aligned_cols=22  Identities=14%  Similarity=0.170  Sum_probs=8.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999
Q gi|254781130|r  338 KAIQELLQEVKELRDMIDKQNE  359 (378)
Q Consensus       338 ~aiqel~~~i~~l~~~i~~~~~  359 (378)
                      .|.|-+.++|..+-..+..+.+
T Consensus        57 ~A~kKIe~kV~~~~~~~vTk~e   78 (96)
T d2oa5a1          57 VAMRKIEAKVRSRAAKAVTEQE   78 (96)
T ss_dssp             HHHHHHHHHHHHHHTTCCBHHH
T ss_pred             HHHHHHHHHHHHHHCCCCCHHH
T ss_conf             9999999999988500135999


No 48 
>d1vp7a_ a.7.13.1 (A:) Exonuclease VII small subunit XseB {Bordetella pertussis [TaxId: 520]}
Probab=23.34  E-value=16  Score=13.01  Aligned_cols=46  Identities=13%  Similarity=0.127  Sum_probs=35.4

Q ss_pred             CCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             7660313677759999999999999999999999999999999999987555
Q gi|254781130|r  321 IGGYLAPNPSVIIPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNTPL  372 (378)
Q Consensus       321 ~~~~~~~~~~~l~~~li~aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~~  372 (378)
                      ..|-+.++-      .++..++-...++..++++++-.++++.|.+..++|+
T Consensus        23 E~g~l~Lee------sl~~ye~G~~L~~~C~~~L~~ae~ki~~l~~~~~kPl   68 (68)
T d1vp7a_          23 ENGTLPLEQ------SLSAYRRGVELARVCQDRLAQAEQQVKVLEGDLLRPL   68 (68)
T ss_dssp             HTTCSCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HCCCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             679998999------9999999999999999999999999999972566899


No 49 
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=23.28  E-value=15  Score=13.16  Aligned_cols=40  Identities=15%  Similarity=0.107  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHEECCCCCEEECHHHHHHHHHHHHHHHHHHH
Q ss_conf             8887663344106766031367775999999999999999
Q gi|254781130|r  308 NNLKEINEVFVDTIGGYLAPNPSVIIPHLAKAIQELLQEV  347 (378)
Q Consensus       308 qev~~v~p~~v~~~~~~~~~~~~~l~~~li~aiqel~~~i  347 (378)
                      ++++.++|......+.-..++-..+.-..|+=|++|++++
T Consensus        22 ~~L~~llP~~~~~~~~~~k~sKa~iL~~Av~yI~~Lq~~v   61 (63)
T d1a0aa_          22 HELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG   61 (63)
T ss_dssp             HHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             9999887885344677643109999999999999999761


No 50 
>d1x4ta1 a.2.15.1 (A:7-86) Pre-mRNA-splicing factor ISY1 homolog {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.28  E-value=16  Score=13.00  Aligned_cols=35  Identities=20%  Similarity=0.202  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999999999998755543
Q gi|254781130|r  339 AIQELLQEVKELRDMIDKQNEEHQDVQDMSNTPLNS  374 (378)
Q Consensus       339 aiqel~~~i~~l~~~i~~~~~~~~~l~~~~~~~~~~  374 (378)
                      -++|.+.+|.++++.--- ..++.+|-|.+|+|+-+
T Consensus        27 iikEI~~kvs~Iqn~~L~-e~~IRdLNDeINkL~re   61 (80)
T d1x4ta1          27 IIGEISKKVAQIQNAGLG-EFRIRDLNDEINKLLRE   61 (80)
T ss_dssp             HHHHHHHHHHHHHHCCSC-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHHHHH
T ss_conf             999999999985089987-79999989999999999


No 51 
>d1yf2a1 d.287.1.2 (A:1-220) Bipartite methylase S protein MJ0130 {Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=22.41  E-value=16  Score=12.88  Aligned_cols=32  Identities=3%  Similarity=0.194  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999987555
Q gi|254781130|r  341 QELLQEVKELRDMIDKQNEEHQDVQDMSNTPL  372 (378)
Q Consensus       341 qel~~~i~~l~~~i~~~~~~~~~l~~~~~~~~  372 (378)
                      ++..+.++.+.+.++.++++++.|+++-..++
T Consensus       172 ~~I~~~l~~i~~~i~~~~~~i~~L~~~r~~ll  203 (220)
T d1yf2a1         172 KQIAKILTKIDEGIEIIEKSINKLERIKKGLM  203 (220)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999999


No 52 
>d1ux5a_ a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=22.13  E-value=17  Score=12.84  Aligned_cols=36  Identities=11%  Similarity=0.094  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             775999999999999999999999999999999999
Q gi|254781130|r  330 SVIIPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQ  365 (378)
Q Consensus       330 ~~l~~~li~aiqel~~~i~~l~~~i~~~~~~~~~l~  365 (378)
                      +++...+.+-+++...+++.|++...+..+..+++-
T Consensus       329 d~f~~~~~~fl~~~~~~~~~l~~~~~~~~~~~~~~~  364 (411)
T d1ux5a_         329 DKVLIKTLPVLPEARKKGDLLEDEVKLTIMEFESLM  364 (411)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             169999999999999999999999999999999999


No 53 
>d1sd4a_ a.4.5.39 (A:) Penicillinase repressor BlaI {Staphylococcus aureus [TaxId: 1280]}
Probab=21.83  E-value=14  Score=13.46  Aligned_cols=47  Identities=21%  Similarity=0.354  Sum_probs=26.0

Q ss_pred             EEEHHHHHHHHHHHEECCCCCEEECHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q ss_conf             2557888766334410676603136777599999999999-999999999999999
Q gi|254781130|r  304 GFSENNLKEINEVFVDTIGGYLAPNPSVIIPHLAKAIQEL-LQEVKELRDMIDKQN  358 (378)
Q Consensus       304 G~iAqev~~v~p~~v~~~~~~~~~~~~~l~~~li~aiqel-~~~i~~l~~~i~~~~  358 (378)
                      -++++++++++..+..       -+...++..|++. ++| .+++++|++.|+++.
T Consensus        73 ~~~~~~~~~~~~~~~~-------gs~~~lv~~~~~~-~~ls~~el~eL~~~l~~~~  120 (122)
T d1sd4a_          73 DIKMKTAKTFLNKLYG-------GDMKSLVLNFAKN-EELNNKEIEELRDILNDIS  120 (122)
T ss_dssp             HHHHHHHHHHHHHHHT-------TCHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHC-------CCHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHH
T ss_conf             9999999999999969-------9999999999857-8999999999999999874


No 54 
>d1de4c1 a.48.2.1 (C:609-756) Transferrin receptor ectodomain, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.19  E-value=17  Score=12.71  Aligned_cols=31  Identities=13%  Similarity=0.092  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Q ss_conf             5999999999999-----999999999999999999
Q gi|254781130|r  332 IIPHLAKAIQELL-----QEVKELRDMIDKQNEEHQ  362 (378)
Q Consensus       332 l~~~li~aiqel~-----~~i~~l~~~i~~~~~~~~  362 (378)
                      -.|-+..||....     +..+.++++|.-...-++
T Consensus       100 ~fPgi~dai~~~~~~~~~~~~~~v~~qls~~t~~i~  135 (148)
T d1de4c1         100 TLPALLENLKLRKQNNGAFNETLFRNQLALATWTIQ  135 (148)
T ss_dssp             SHHHHHHHHHHTSSCSSCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             886399999753045643459999999999999999


No 55 
>d1xppa_ d.74.3.2 (A:) DNA-directed RNA polymerase subunit L, RpoL {Thermoplasma acidophilum [TaxId: 2303]}
Probab=20.82  E-value=18  Score=12.65  Aligned_cols=32  Identities=13%  Similarity=0.206  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             59999999999999999999999999999999
Q gi|254781130|r  332 IIPHLAKAIQELLQEVKELRDMIDKQNEEHQD  363 (378)
Q Consensus       332 l~~~li~aiqel~~~i~~l~~~i~~~~~~~~~  363 (378)
                      ..-.|.+|+++|.++++.|++.++++-++.+.
T Consensus        66 p~~~l~~a~~~li~~~~~l~~~~~~~~~~~~~   97 (99)
T d1xppa_          66 PQSAIKRAVRKLSKLYEDLGTQFQKEFQRYES   97 (99)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             79999999999999999999999999998763


Done!