RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254781130|ref|YP_003065543.1| hypothetical protein CLIBASIA_05160 [Candidatus Liberibacter asiaticus str. psy62] (378 letters) >3gud_A NECK appendage protein; 3-helix bundle, chaperon, chaperone; HET: PEG; 2.20A {Bacillus phage ga-1} (A:) Length = 129 Score = 43.5 bits (102), Expect = 4e-05 Identities = 17/128 (13%), Positives = 32/128 (25%), Gaps = 32/128 (25%) Query: 260 SDERLKKVHGESSASAREIIEQLKFIDFNYLPESGMDSEL-RYLIGFSENNLKEINEVFV 318 SDER K S + E++KF + + E RY G + ++ E Sbjct: 1 SDERHKTDIAPISDKVLDAWEKVKFYQYKFKDAVDEKGEEARYHFGVIAQQIVKVFEDEG 60 Query: 319 DTIGGY-------------------------------LAPNPSVIIPHLAKAIQELLQEV 347 + Y + P+ ++ L+ + Sbjct: 61 LSAFDYGLVGYDEWEATEDEYDSEGNLVEKGREAGNIYSIRPTECQWLEMACMRRKLERL 120 Query: 348 KELRDMID 355 Sbjct: 121 SLEHHHHH 128 >3gw6_A Endo-N-acetylneuraminidase; chaperone, glycosidase, hydrolase; HET: TAM; 2.60A {Enterobacteria phage K1F} (A:109-200,A:241-275) Length = 127 Score = 41.9 bits (98), Expect = 1e-04 Identities = 7/92 (7%), Positives = 24/92 (26%), Gaps = 4/92 (4%) Query: 252 AVGCSYFLSDERLKKVHGESSASAREIIEQLKFIDFNYLPE-SGMDSELRYLIGFSENNL 310 ++ K + + + +I + +L ++ R G + Sbjct: 6 LGSNPIVTANGERKTEPVVFDDAFLDAWGDVHYIMYQWLDAVQLKGNDARIHFGVIAQQI 65 Query: 311 KEINEVFVDTIGGYLAPNPSVIIPHLAKAIQE 342 +++ +V+ +E Sbjct: 66 RDVFIAHGLMDENSTNCRYAVLCY---DKYEE 94 >2php_A Uncharacterized protein MJ0236; chlorine ION, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.03A {Methanocaldococcus jannaschii DSM2661} (A:) Length = 192 Score = 29.0 bits (65), Expect = 1.1 Identities = 12/87 (13%), Positives = 26/87 (29%), Gaps = 17/87 (19%) Query: 277 EIIEQLK----FIDFNYLPESGMDSELRYLIGFSENNLKEINEVFVDTIGGY-------- 324 +I+ LK F+ E S + + + ++ D GG Sbjct: 104 GLIKLLKDKFAVSSFDRKEEPPNVSTXEWGTKIACEKFGGVPDIIYDR-GGEGKEPXIRV 162 Query: 325 LAPNPSVIIPHLAKAIQELLQEVKELR 351 L + + K ++ + + L Sbjct: 163 LGRDA----IEVVKKVEVIQKIYNTLE 185 >2zz8_A LIPL32 protein; outer-membrane protein, unknown function; 2.01A {Leptospira interrogans} PDB: 3frl_A* (A:) Length = 241 Score = 28.2 bits (62), Expect = 1.8 Identities = 11/46 (23%), Positives = 20/46 (43%) Query: 301 YLIGFSENNLKEINEVFVDTIGGYLAPNPSVIIPHLAKAIQELLQE 346 Y I F+ E+ FV ++G P + P + +EL ++ Sbjct: 190 YRISFTTYKPGEVKGSFVASVGLLFPPGIPGVSPLIHSNPEELQKQ 235 >3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A (A:) Length = 127 Score = 28.0 bits (62), Expect = 2.1 Identities = 10/53 (18%), Positives = 17/53 (32%), Gaps = 4/53 (7%) Query: 19 NSNISSSAYNNLLKDLALDNNSPRPISAGGTAADNAVQARV-NLGTDDASNLT 70 +S+ A DL ++ P + A + V NLG + Sbjct: 4 YDKLSNLATTFEFPDLTVEIKGPDVVGVNKLA---EYEVHVKNLGGIGVPSTK 53 >1ses_A Seryl-tRNA synthetase; ligase(synthetase); HET: AHX AMP; 2.50A {Thermus thermophilus} (A:25-107) Length = 83 Score = 27.7 bits (62), Expect = 2.6 Identities = 11/73 (15%), Positives = 25/73 (34%), Gaps = 14/73 (19%) Query: 295 MDSELRYLIGFSENNLKEINEVFVDTIGGYLAPNPSVIIPHLAKA-IQELLQEVKELRDM 353 +D E++ L + E N+V + +P + L+ K L + Sbjct: 9 LDREVQELKKRLQEVQTERNQV-------------AKRVPKAPPEEKEALIARGKALGEE 55 Query: 354 IDKQNEEHQDVQD 366 + E ++ + Sbjct: 56 AKRLEEALREKEA 68 >2efr_A General control protein GCN4 and tropomyosin 1 alpha chain; coiled coil, destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A (A:) Length = 155 Score = 27.5 bits (60), Expect = 2.7 Identities = 5/32 (15%), Positives = 16/32 (50%) Query: 336 LAKAIQELLQEVKELRDMIDKQNEEHQDVQDM 367 +++ +++L +V+EL E ++ + Sbjct: 124 ISEEMKQLEDKVEELLSKNYHLENEVARLKKL 155 >2hwg_A Phosphoenolpyruvate-protein phosphotransferase; enzyme I, phosphoenolpyruvate:sugar phosphotransferase system, PTS; HET: NEP; 2.70A {Escherichia coli} (A:1-27,A:149-257) Length = 136 Score = 27.5 bits (61), Expect = 2.8 Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 3/46 (6%) Query: 310 LKEINEVFVDTIGG--YLAPNPSVIIPHLAKAIQELLQEVKELRDM 353 +K + + +D + Y+ P V I +++ E EL + Sbjct: 91 VKNDDYLILDAVNNQVYVNPTNEV-IDKXRAVQEQVASEKAELAKL 135 >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 subcomplex of F1-ATPase, hydrolase; 3.20A {Bacillus SP} (E:357-473) Length = 117 Score = 27.3 bits (61), Expect = 3.0 Identities = 8/19 (42%), Positives = 15/19 (78%) Query: 336 LAKAIQELLQEVKELRDMI 354 +A+ +Q+ L+ KEL+D+I Sbjct: 10 VARKVQQTLERYKELQDII 28 >1yvl_A Signal transducer and activator of transcription 1-alpha/beta; signaling protein; HET: PTR; 3.00A {Homo sapiens} (A:128-316) Length = 189 Score = 26.9 bits (59), Expect = 4.0 Identities = 8/33 (24%), Positives = 20/33 (60%) Query: 335 HLAKAIQELLQEVKELRDMIDKQNEEHQDVQDM 367 +A+++Q++ Q++K+L ++ K EH + Sbjct: 138 IVAESLQQVRQQLKKLEELEQKYTYEHDPITKN 170 >2fom_B Polyprotein; flavivirus, NS3 protease, NS2B cofactor, viral protein/protease complex; 1.50A {Dengue virus 2} (B:) Length = 185 Score = 26.7 bits (59), Expect = 4.9 Identities = 14/89 (15%), Positives = 28/89 (31%), Gaps = 6/89 (6%) Query: 196 GDIMCY----KRQKTVWQGIEIAQHTANIALESTKNCLYKTTVLNMGRG-PGYIHFDTDK 250 D++ Y K + W+ E Q A ++ + K + G G + D Sbjct: 74 KDLISYGGGWKLEGE-WKEGEEVQVLALEPGKNPRAVQTKPGLFKTNTGTIGAVSLDFSP 132 Query: 251 GAVGCSYFLSDERLKKVHGESSASAREII 279 G G ++ ++G + Sbjct: 133 GTSGSPIVDKKGKVVGLYGNGVVTRSGAY 161 >2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y (1:1-110) Length = 110 Score = 26.6 bits (59), Expect = 5.0 Identities = 8/30 (26%), Positives = 15/30 (50%) Query: 338 KAIQELLQEVKELRDMIDKQNEEHQDVQDM 367 +A +++ QE LR +D D+Q + Sbjct: 43 EAARKVSQEAARLRRTVDTFRSLESDLQGL 72 >1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} (A:1-103) Length = 103 Score = 26.6 bits (59), Expect = 5.2 Identities = 11/83 (13%), Positives = 26/83 (31%), Gaps = 11/83 (13%) Query: 273 ASAREIIEQLK-FID-FNYLPE----SGMDSELRYLIGFSENNLKEINEVFVDTIGGYLA 326 + + + + F +Y +R + +L+ + D L Sbjct: 9 VDKSKTLTKFEEFFSLQDYKDRVFEAIEKYPNVRSIE-VDYLDLEMFDPDLAD----LLI 63 Query: 327 PNPSVIIPHLAKAIQELLQEVKE 349 P +I +AI+ + + K Sbjct: 64 EKPDDVIRAAQQAIRNIDRLRKN 86 >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1- carboxylic acid, PHZM; 1.80A {Pseudomonas aeruginosa PAO1} (A:1-89) Length = 89 Score = 26.7 bits (59), Expect = 5.3 Identities = 8/38 (21%), Positives = 12/38 (31%), Gaps = 1/38 (2%) Query: 123 LAPRALQNLVDHAHKPNHIVYTTDSNQYAATPLSSFMR 160 + L+ I + YA TP S +R Sbjct: 53 SDAERIHRLMRLLVA-FEIFQGDTRDGYANTPTSHLLR 89 >3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ protein, ATP-binding, DNA-binding; 4.35A {Sulfolobus solfataricus} (A:1-105) Length = 105 Score = 26.3 bits (58), Expect = 7.0 Identities = 12/98 (12%), Positives = 34/98 (34%), Gaps = 19/98 (19%) Query: 276 REIIEQLKFIDF--NYLPESGMDSELRYLIGFSENNLKEINEVFVD---------TIGGY 324 + + FI+F + + + +Y+ +E + ++ + Sbjct: 2 IDYRD--VFIEFLTTFKGNNN---QNKYIERINELVAYRKKSLIIEFSDVLSFNENLAYE 56 Query: 325 LAPNPSVIIPHLAKAIQELLQEVKELRDMIDKQNEEHQ 362 + N +I+P L A+ + + +L + E+ Sbjct: 57 IINNTKIILPILEGALYDH---ILQLDPTYQRDIEKVH 91 >1utr_A Uteroglobin; clara cell 17 kDa protein (CC10), phospholipase A2 inhibitor, clara cell phospholipid-binding protein, progesterone binding; HET: PCB; NMR {Rattus norvegicus} (A:) Length = 96 Score = 26.3 bits (58), Expect = 7.2 Identities = 11/67 (16%), Positives = 25/67 (37%), Gaps = 3/67 (4%) Query: 312 EINEVFVDTIGGYLAPNPSVIIPHLAK--AIQELLQEVKELRDMIDKQNEEHQD-VQDMS 368 +I F+ + L + S L +L +L+ ++D +E + + ++ Sbjct: 22 DICPGFLQVLEALLLGSESNYEAALKPFNPASDLQNAGTQLKRLVDTLPQETRINIVKLT 81 Query: 369 NTPLNSQ 375 L S Sbjct: 82 EKILTSP 88 >1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} (A:) Length = 59 Score = 26.1 bits (58), Expect = 8.1 Identities = 5/28 (17%), Positives = 15/28 (53%) Query: 340 IQELLQEVKELRDMIDKQNEEHQDVQDM 367 ++ELL + L + + + + D+ ++ Sbjct: 9 VEELLSKNYHLENEVARLKKLVGDLLNV 36 >3ddj_A CBS domain-containing protein; NP_344512.1, structural genomics, joint center for structural genomics, JCSG; HET: AMP; 1.80A {Sulfolobus solfataricus} (A:1-103,A:206-232) Length = 130 Score = 26.1 bits (57), Expect = 8.2 Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 2/47 (4%) Query: 299 LRYLIGFSENNLK--EINEVFVDTIGGYLAPNPSVIIPHLAKAIQEL 343 L + + +++ ++ + I Y PNP I LAKA+ +L Sbjct: 71 LSTVESYCKDSCSQGDLYHISTTPIIDYXTPNPVNAIKQLAKAVDKL 117 >2d0t_A Indoleamine 2,3-dioxygenase; helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: HEM PIM NHE; 2.30A {Homo sapiens} (A:1-128,A:242-262) Length = 149 Score = 25.9 bits (57), Expect = 9.4 Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 8/46 (17%) Query: 318 VDTIGGYLAPNPSVIIPH-------LAKAIQELLQEVKELRDMIDK 356 +D G+ PNP +P +AK + +L++ +LR+ ++K Sbjct: 20 IDEEVGFALPNPQENLPDFYNDWMFIAKHLPDLIES-GQLRERVEK 64 >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* (A:1-90) Length = 90 Score = 25.9 bits (57), Expect = 9.9 Identities = 6/39 (15%), Positives = 10/39 (25%), Gaps = 1/39 (2%) Query: 123 LAPRALQNLVDHAHKPNHIVYTTDSNQYAATPLSSFMRK 161 +L L+ H + Y T +R Sbjct: 50 AHADSLDRLLRHLV-AVGLFTRDGQGVYGLTEFGEQLRD 87 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.316 0.133 0.387 Gapped Lambda K H 0.267 0.0569 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 2,768,026 Number of extensions: 122945 Number of successful extensions: 511 Number of sequences better than 10.0: 1 Number of HSP's gapped: 510 Number of HSP's successfully gapped: 38 Length of query: 378 Length of database: 4,956,049 Length adjustment: 90 Effective length of query: 288 Effective length of database: 1,913,599 Effective search space: 551116512 Effective search space used: 551116512 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 55 (25.3 bits)