RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254781130|ref|YP_003065543.1| hypothetical protein
CLIBASIA_05160 [Candidatus Liberibacter asiaticus str. psy62]
         (378 letters)



>3gud_A NECK appendage protein; 3-helix bundle, chaperon, chaperone;
           HET: PEG; 2.20A {Bacillus phage ga-1} (A:)
          Length = 129

 Score = 43.5 bits (102), Expect = 4e-05
 Identities = 17/128 (13%), Positives = 32/128 (25%), Gaps = 32/128 (25%)

Query: 260 SDERLKKVHGESSASAREIIEQLKFIDFNYLPESGMDSEL-RYLIGFSENNLKEINEVFV 318
           SDER K      S    +  E++KF  + +        E  RY  G     + ++ E   
Sbjct: 1   SDERHKTDIAPISDKVLDAWEKVKFYQYKFKDAVDEKGEEARYHFGVIAQQIVKVFEDEG 60

Query: 319 DTIGGY-------------------------------LAPNPSVIIPHLAKAIQELLQEV 347
            +   Y                                +  P+         ++  L+ +
Sbjct: 61  LSAFDYGLVGYDEWEATEDEYDSEGNLVEKGREAGNIYSIRPTECQWLEMACMRRKLERL 120

Query: 348 KELRDMID 355
                   
Sbjct: 121 SLEHHHHH 128


>3gw6_A Endo-N-acetylneuraminidase; chaperone, glycosidase,
           hydrolase; HET: TAM; 2.60A {Enterobacteria phage K1F}
           (A:109-200,A:241-275)
          Length = 127

 Score = 41.9 bits (98), Expect = 1e-04
 Identities = 7/92 (7%), Positives = 24/92 (26%), Gaps = 4/92 (4%)

Query: 252 AVGCSYFLSDERLKKVHGESSASAREIIEQLKFIDFNYLPE-SGMDSELRYLIGFSENNL 310
                   ++   K        +  +    + +I + +L       ++ R   G     +
Sbjct: 6   LGSNPIVTANGERKTEPVVFDDAFLDAWGDVHYIMYQWLDAVQLKGNDARIHFGVIAQQI 65

Query: 311 KEINEVFVDTIGGYLAPNPSVIIPHLAKAIQE 342
           +++                +V+        +E
Sbjct: 66  RDVFIAHGLMDENSTNCRYAVLCY---DKYEE 94


>2php_A Uncharacterized protein MJ0236; chlorine ION, PSI-2,
           NYSGXRC, structural genomics, protein structure
           initiative; 2.03A {Methanocaldococcus jannaschii
           DSM2661} (A:)
          Length = 192

 Score = 29.0 bits (65), Expect = 1.1
 Identities = 12/87 (13%), Positives = 26/87 (29%), Gaps = 17/87 (19%)

Query: 277 EIIEQLK----FIDFNYLPESGMDSELRYLIGFSENNLKEINEVFVDTIGGY-------- 324
            +I+ LK       F+   E    S   +    +      + ++  D  GG         
Sbjct: 104 GLIKLLKDKFAVSSFDRKEEPPNVSTXEWGTKIACEKFGGVPDIIYDR-GGEGKEPXIRV 162

Query: 325 LAPNPSVIIPHLAKAIQELLQEVKELR 351
           L  +       + K ++ + +    L 
Sbjct: 163 LGRDA----IEVVKKVEVIQKIYNTLE 185


>2zz8_A LIPL32 protein; outer-membrane protein, unknown function;
           2.01A {Leptospira interrogans} PDB: 3frl_A* (A:)
          Length = 241

 Score = 28.2 bits (62), Expect = 1.8
 Identities = 11/46 (23%), Positives = 20/46 (43%)

Query: 301 YLIGFSENNLKEINEVFVDTIGGYLAPNPSVIIPHLAKAIQELLQE 346
           Y I F+     E+   FV ++G    P    + P +    +EL ++
Sbjct: 190 YRISFTTYKPGEVKGSFVASVGLLFPPGIPGVSPLIHSNPEELQKQ 235


>3idu_A Uncharacterized protein; all beta-protein, structural
          genomics, PSI-2, protein structure initiative; 1.70A
          {Pyrococcus furiosus} PDB: 2kl6_A (A:)
          Length = 127

 Score = 28.0 bits (62), Expect = 2.1
 Identities = 10/53 (18%), Positives = 17/53 (32%), Gaps = 4/53 (7%)

Query: 19 NSNISSSAYNNLLKDLALDNNSPRPISAGGTAADNAVQARV-NLGTDDASNLT 70
             +S+ A      DL ++   P  +     A     +  V NLG     +  
Sbjct: 4  YDKLSNLATTFEFPDLTVEIKGPDVVGVNKLA---EYEVHVKNLGGIGVPSTK 53


>1ses_A Seryl-tRNA synthetase; ligase(synthetase); HET: AHX AMP;
           2.50A {Thermus thermophilus} (A:25-107)
          Length = 83

 Score = 27.7 bits (62), Expect = 2.6
 Identities = 11/73 (15%), Positives = 25/73 (34%), Gaps = 14/73 (19%)

Query: 295 MDSELRYLIGFSENNLKEINEVFVDTIGGYLAPNPSVIIPHLAKA-IQELLQEVKELRDM 353
           +D E++ L    +    E N+V             +  +P       + L+   K L + 
Sbjct: 9   LDREVQELKKRLQEVQTERNQV-------------AKRVPKAPPEEKEALIARGKALGEE 55

Query: 354 IDKQNEEHQDVQD 366
             +  E  ++ + 
Sbjct: 56  AKRLEEALREKEA 68


>2efr_A General control protein GCN4 and tropomyosin 1 alpha chain;
           coiled coil, destabilizing cluster, hydrophobic core,
           contractIle protein; 1.80A {Saccharomyces cerevisiae}
           PDB: 2efs_A 2d3e_A (A:)
          Length = 155

 Score = 27.5 bits (60), Expect = 2.7
 Identities = 5/32 (15%), Positives = 16/32 (50%)

Query: 336 LAKAIQELLQEVKELRDMIDKQNEEHQDVQDM 367
           +++ +++L  +V+EL         E   ++ +
Sbjct: 124 ISEEMKQLEDKVEELLSKNYHLENEVARLKKL 155


>2hwg_A Phosphoenolpyruvate-protein phosphotransferase; enzyme I,
           phosphoenolpyruvate:sugar phosphotransferase system,
           PTS; HET: NEP; 2.70A {Escherichia coli}
           (A:1-27,A:149-257)
          Length = 136

 Score = 27.5 bits (61), Expect = 2.8
 Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 3/46 (6%)

Query: 310 LKEINEVFVDTIGG--YLAPNPSVIIPHLAKAIQELLQEVKELRDM 353
           +K  + + +D +    Y+ P   V I       +++  E  EL  +
Sbjct: 91  VKNDDYLILDAVNNQVYVNPTNEV-IDKXRAVQEQVASEKAELAKL 135


>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3
           subcomplex of F1-ATPase, hydrolase; 3.20A {Bacillus SP}
           (E:357-473)
          Length = 117

 Score = 27.3 bits (61), Expect = 3.0
 Identities = 8/19 (42%), Positives = 15/19 (78%)

Query: 336 LAKAIQELLQEVKELRDMI 354
           +A+ +Q+ L+  KEL+D+I
Sbjct: 10  VARKVQQTLERYKELQDII 28


>1yvl_A Signal transducer and activator of transcription
           1-alpha/beta; signaling protein; HET: PTR; 3.00A {Homo
           sapiens} (A:128-316)
          Length = 189

 Score = 26.9 bits (59), Expect = 4.0
 Identities = 8/33 (24%), Positives = 20/33 (60%)

Query: 335 HLAKAIQELLQEVKELRDMIDKQNEEHQDVQDM 367
            +A+++Q++ Q++K+L ++  K   EH  +   
Sbjct: 138 IVAESLQQVRQQLKKLEELEQKYTYEHDPITKN 170


>2fom_B Polyprotein; flavivirus, NS3 protease, NS2B cofactor, viral
           protein/protease complex; 1.50A {Dengue virus 2} (B:)
          Length = 185

 Score = 26.7 bits (59), Expect = 4.9
 Identities = 14/89 (15%), Positives = 28/89 (31%), Gaps = 6/89 (6%)

Query: 196 GDIMCY----KRQKTVWQGIEIAQHTANIALESTKNCLYKTTVLNMGRG-PGYIHFDTDK 250
            D++ Y    K +   W+  E  Q  A    ++ +    K  +     G  G +  D   
Sbjct: 74  KDLISYGGGWKLEGE-WKEGEEVQVLALEPGKNPRAVQTKPGLFKTNTGTIGAVSLDFSP 132

Query: 251 GAVGCSYFLSDERLKKVHGESSASAREII 279
           G  G        ++  ++G    +     
Sbjct: 133 GTSGSPIVDKKGKVVGLYGNGVVTRSGAY 161


>2ihr_1 Peptide chain release factor 2; mixed alpha-beta,
           translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y*
           3f1e_X 3f1g_X 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y (1:1-110)
          Length = 110

 Score = 26.6 bits (59), Expect = 5.0
 Identities = 8/30 (26%), Positives = 15/30 (50%)

Query: 338 KAIQELLQEVKELRDMIDKQNEEHQDVQDM 367
           +A +++ QE   LR  +D       D+Q +
Sbjct: 43  EAARKVSQEAARLRRTVDTFRSLESDLQGL 72


>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A
           {Methanothermobacterthermautotrophicus} (A:1-103)
          Length = 103

 Score = 26.6 bits (59), Expect = 5.2
 Identities = 11/83 (13%), Positives = 26/83 (31%), Gaps = 11/83 (13%)

Query: 273 ASAREIIEQLK-FID-FNYLPE----SGMDSELRYLIGFSENNLKEINEVFVDTIGGYLA 326
               + + + + F    +Y             +R +      +L+  +    D     L 
Sbjct: 9   VDKSKTLTKFEEFFSLQDYKDRVFEAIEKYPNVRSIE-VDYLDLEMFDPDLAD----LLI 63

Query: 327 PNPSVIIPHLAKAIQELLQEVKE 349
             P  +I    +AI+ + +  K 
Sbjct: 64  EKPDDVIRAAQQAIRNIDRLRKN 86


>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin,
           phenazine-1- carboxylic acid, PHZM; 1.80A {Pseudomonas
           aeruginosa PAO1} (A:1-89)
          Length = 89

 Score = 26.7 bits (59), Expect = 5.3
 Identities = 8/38 (21%), Positives = 12/38 (31%), Gaps = 1/38 (2%)

Query: 123 LAPRALQNLVDHAHKPNHIVYTTDSNQYAATPLSSFMR 160
                +  L+        I      + YA TP S  +R
Sbjct: 53  SDAERIHRLMRLLVA-FEIFQGDTRDGYANTPTSHLLR 89


>3f9v_A Minichromosome maintenance protein MCM; replicative
           helicase, DNA replication, MCM complex, AAA+ protein,
           ATP-binding, DNA-binding; 4.35A {Sulfolobus
           solfataricus} (A:1-105)
          Length = 105

 Score = 26.3 bits (58), Expect = 7.0
 Identities = 12/98 (12%), Positives = 34/98 (34%), Gaps = 19/98 (19%)

Query: 276 REIIEQLKFIDF--NYLPESGMDSELRYLIGFSENNLKEINEVFVD---------TIGGY 324
            +  +   FI+F   +   +    + +Y+   +E        + ++          +   
Sbjct: 2   IDYRD--VFIEFLTTFKGNNN---QNKYIERINELVAYRKKSLIIEFSDVLSFNENLAYE 56

Query: 325 LAPNPSVIIPHLAKAIQELLQEVKELRDMIDKQNEEHQ 362
           +  N  +I+P L  A+ +    + +L     +  E+  
Sbjct: 57  IINNTKIILPILEGALYDH---ILQLDPTYQRDIEKVH 91


>1utr_A Uteroglobin; clara cell 17 kDa protein (CC10), phospholipase
           A2 inhibitor, clara cell phospholipid-binding protein,
           progesterone binding; HET: PCB; NMR {Rattus norvegicus}
           (A:)
          Length = 96

 Score = 26.3 bits (58), Expect = 7.2
 Identities = 11/67 (16%), Positives = 25/67 (37%), Gaps = 3/67 (4%)

Query: 312 EINEVFVDTIGGYLAPNPSVIIPHLAK--AIQELLQEVKELRDMIDKQNEEHQD-VQDMS 368
           +I   F+  +   L  + S     L       +L     +L+ ++D   +E +  +  ++
Sbjct: 22  DICPGFLQVLEALLLGSESNYEAALKPFNPASDLQNAGTQLKRLVDTLPQETRINIVKLT 81

Query: 369 NTPLNSQ 375
              L S 
Sbjct: 82  EKILTSP 88


>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled
           coil, heptad repeat, leucine zipper, fusion protein;
           1.9A {Saccharomyces cerevisiae} (A:)
          Length = 59

 Score = 26.1 bits (58), Expect = 8.1
 Identities = 5/28 (17%), Positives = 15/28 (53%)

Query: 340 IQELLQEVKELRDMIDKQNEEHQDVQDM 367
           ++ELL +   L + + +  +   D+ ++
Sbjct: 9   VEELLSKNYHLENEVARLKKLVGDLLNV 36


>3ddj_A CBS domain-containing protein; NP_344512.1, structural
           genomics, joint center for structural genomics, JCSG;
           HET: AMP; 1.80A {Sulfolobus solfataricus}
           (A:1-103,A:206-232)
          Length = 130

 Score = 26.1 bits (57), Expect = 8.2
 Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 299 LRYLIGFSENNLK--EINEVFVDTIGGYLAPNPSVIIPHLAKAIQEL 343
           L  +  + +++    ++  +    I  Y  PNP   I  LAKA+ +L
Sbjct: 71  LSTVESYCKDSCSQGDLYHISTTPIIDYXTPNPVNAIKQLAKAVDKL 117


>2d0t_A Indoleamine 2,3-dioxygenase; helix bundle, riken structural
           genomics/proteomics initiative, RSGI, structural
           genomics, oxidoreductase; HET: HEM PIM NHE; 2.30A {Homo
           sapiens} (A:1-128,A:242-262)
          Length = 149

 Score = 25.9 bits (57), Expect = 9.4
 Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 8/46 (17%)

Query: 318 VDTIGGYLAPNPSVIIPH-------LAKAIQELLQEVKELRDMIDK 356
           +D   G+  PNP   +P        +AK + +L++   +LR+ ++K
Sbjct: 20  IDEEVGFALPNPQENLPDFYNDWMFIAKHLPDLIES-GQLRERVEK 64


>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET:
           SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB:
           3i58_A* 3i5u_A* 3i64_A* (A:1-90)
          Length = 90

 Score = 25.9 bits (57), Expect = 9.9
 Identities = 6/39 (15%), Positives = 10/39 (25%), Gaps = 1/39 (2%)

Query: 123 LAPRALQNLVDHAHKPNHIVYTTDSNQYAATPLSSFMRK 161
               +L  L+ H      +        Y  T     +R 
Sbjct: 50  AHADSLDRLLRHLV-AVGLFTRDGQGVYGLTEFGEQLRD 87


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.316    0.133    0.387 

Gapped
Lambda     K      H
   0.267   0.0569    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,768,026
Number of extensions: 122945
Number of successful extensions: 511
Number of sequences better than 10.0: 1
Number of HSP's gapped: 510
Number of HSP's successfully gapped: 38
Length of query: 378
Length of database: 4,956,049
Length adjustment: 90
Effective length of query: 288
Effective length of database: 1,913,599
Effective search space: 551116512
Effective search space used: 551116512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.3 bits)