RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781130|ref|YP_003065543.1| hypothetical protein
CLIBASIA_05160 [Candidatus Liberibacter asiaticus str. psy62]
         (378 letters)



>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 888

 Score = 28.1 bits (61), Expect = 1.2
 Identities = 13/53 (24%), Positives = 22/53 (41%)

Query: 306 SENNLKEINEVFVDTIGGYLAPNPSVIIPHLAKAIQELLQEVKELRDMIDKQN 358
             N  K + E    TIG      P  + P L + I+     ++ +RD  +K +
Sbjct: 758 RPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDS 810


>d1fx0b1 a.69.1.1 (B:378-485) F1 ATP synthase beta subunit, domain 3
           {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}
          Length = 108

 Score = 27.7 bits (62), Expect = 1.4
 Identities = 10/32 (31%), Positives = 18/32 (56%)

Query: 336 LAKAIQELLQEVKELRDMIDKQNEEHQDVQDM 367
           +A+ ++E LQ  KEL+D+I     +    +D 
Sbjct: 10  IAQRVKETLQRYKELQDIIAILGLDELSEEDR 41


>d2bdea1 c.108.1.23 (A:2-459) Cytosolic IMP-GMP specific
           5'-nucleotidase {Legionella pneumophila [TaxId: 446]}
          Length = 458

 Score = 27.9 bits (62), Expect = 1.4
 Identities = 7/42 (16%), Positives = 19/42 (45%)

Query: 334 PHLAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNTPLNSQ 375
             + ++ Q+  QE+ +L+  I   + +   +    N+  N +
Sbjct: 363 RSIDESSQQYDQEIHDLQLQISTVDLQISRLLQEQNSFYNPK 404


>d1skye1 a.69.1.1 (E:357-470) F1 ATP synthase beta subunit, domain 3
           {Bacillus sp., strain ps3 [TaxId: 1409]}
          Length = 114

 Score = 27.3 bits (61), Expect = 2.3
 Identities = 9/31 (29%), Positives = 18/31 (58%)

Query: 336 LAKAIQELLQEVKELRDMIDKQNEEHQDVQD 366
           +A+ +Q+ L+  KEL+D+I     +    +D
Sbjct: 10  VARKVQQTLERYKELQDIIAILGMDELSDED 40


>d1bf5a1 a.47.1.1 (A:136-316) STAT-1, coiled coil domain {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 181

 Score = 27.1 bits (60), Expect = 2.5
 Identities = 8/44 (18%), Positives = 21/44 (47%)

Query: 335 HLAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNTPLNSQKFD 378
           ++   +  +  E+K L D+ D+ + + + +Q+  +      K D
Sbjct: 13  NVKDKVMCIEHEIKSLEDLQDEYDFKCKTLQNREHETNGVAKSD 56


>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 306

 Score = 26.9 bits (58), Expect = 2.5
 Identities = 17/237 (7%), Positives = 63/237 (26%), Gaps = 17/237 (7%)

Query: 115 MREVWTSQLAPRALQNLVDHAHKPNHIVYTTDSNQYAATPLSSFMRKLFSCHNGETLHQA 174
            +    ++    A+     + +     +    +       L + +++             
Sbjct: 83  RKIGDYNKKVFEAMGLKAKYVYGSEFQLDKDYTLNVYRLALKTTLKRARRSMELIAREDE 142

Query: 175 IFQNGAQFYNNSQRIAAFLDDGDIMCYKRQKT-VWQGIEIAQHTANIALESTKNCLYKTT 233
             +     Y   Q         D+     ++  +            + + +         
Sbjct: 143 NPKVAEVIYPIMQVNDIHYLGVDVAVGGMEQRKIHMLARELLPKKVVCIHNPVLTGLDGE 202

Query: 234 VLNMGRGPGYIHFDTDKGAVGCSYFLSDERLKKVHGESSASAREIIEQLKFIDFNYL-PE 292
                    +I  D             +E   K+      +       +  I   +L   
Sbjct: 203 GKMSSSKGNFIAVDDSP----------EEIRAKIKKAYCPAGVVEGNPIMEIAKYFLEYP 252

Query: 293 SGMDSELRYLIGFSENNLKEINEVFVDTIGGYLAPNPSVIIPHLAKAIQELLQEVKE 349
             +    ++    + N+ +E+  +F +        +P  +   +A+ + ++L+ +++
Sbjct: 253 LTIKRPEKFGGDLTVNSYEELESLFKN--KEL---HPMDLKNAVAEELIKILEPIRK 304


>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 584

 Score = 26.7 bits (58), Expect = 3.2
 Identities = 11/91 (12%), Positives = 33/91 (36%), Gaps = 10/91 (10%)

Query: 271 SSASAREIIEQLKFIDFNYLPESGMDSELR----YLIGFSENNLKEINEVFVDTIGGYLA 326
             ++A++I+ ++     +YL  +  D  +R      +             +VDTI   + 
Sbjct: 390 DRSNAQQIVAEML----SYLETA--DYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIR 443

Query: 327 PNPSVIIPHLAKAIQELLQEVKELRDMIDKQ 357
                +   +   + +++    +++    K 
Sbjct: 444 IAGDYVSEEVWYRVIQIVINRDDVQGYAAKT 474


>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
           {Cow (Bos taurus) [TaxId: 9913]}
          Length = 243

 Score = 26.1 bits (57), Expect = 4.5
 Identities = 29/233 (12%), Positives = 65/233 (27%), Gaps = 34/233 (14%)

Query: 139 NHIVYTTDSNQYAATPLSSFMRKLFSCHNGETLHQAIFQNG--AQFYNNSQRIAAFLDDG 196
           + +V   +    A       +RK+ +  +    +  +   G  A       R        
Sbjct: 38  DIVVLGVEKKSVAKLQDERTVRKICALDD----NVCMAFAGLTADARIVINRARVECQS- 92

Query: 197 DIMCYKRQKTVWQGIEIAQHTANIALESTKNCLYKTTVLNMG----RGPGYIHFDTDKGA 252
             +  +   TV               +S     +  + L +G      P     D     
Sbjct: 93  HRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTY 152

Query: 253 VGCSYFLSDERLKKVHGESSASAREIIEQLKFIDFNYLPESGMDSELRYLIGFSENNLKE 312
                           G  + S RE +E+    +     +  +   ++ L+   ++  K 
Sbjct: 153 HAWKAN--------AIGRGAKSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQSGGKN 204

Query: 313 INEVFVDTIGGYLAPNPSVIIPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQ 365
           I    +         NP               +E+++    I+K+ EE++  +
Sbjct: 205 IELAVMRRDQSLKILNP---------------EEIEKYVAEIEKEKEENEKKK 242


>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal
           domain {Paracoccus denitrificans [TaxId: 266]}
          Length = 459

 Score = 25.9 bits (57), Expect = 5.1
 Identities = 20/99 (20%), Positives = 25/99 (25%), Gaps = 20/99 (20%)

Query: 110 VDLSSMREVWTSQLAPRALQNL-VDHAHKPNHIVYTTDSNQYAATPLSSFMRKLFSCHNG 168
           VD       W   L    L N   D+  K     ++T  N      L             
Sbjct: 178 VDADKWEVAW-QVLVSGNLDNCDADYEGK---WAFSTSYNSEKGMTLPEMTAA------- 226

Query: 169 ETLHQAIFQNGAQFYNNSQRIAAFLDDGDIMCYKRQKTV 207
           E  H  +F        N   I   +  GD       K V
Sbjct: 227 EMDHIVVF--------NIAEIEKAIAAGDYQELNGVKVV 257


>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus
           norvegicus) [TaxId: 10116]}
          Length = 124

 Score = 26.0 bits (57), Expect = 5.2
 Identities = 12/38 (31%), Positives = 20/38 (52%)

Query: 341 QELLQEVKELRDMIDKQNEEHQDVQDMSNTPLNSQKFD 378
            E  ++V+E+R  IDK  E  ++V+   +  L S   D
Sbjct: 6   DEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPD 43


>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon
           Methanobacterium thermoautotrophicum [TaxId: 145262]}
          Length = 133

 Score = 25.6 bits (56), Expect = 6.7
 Identities = 18/113 (15%), Positives = 38/113 (33%), Gaps = 11/113 (9%)

Query: 262 ERLKKVHGESSASAREIIEQLKFIDF-NYLPESGMDSELRYLIG---FSENNLKEINEVF 317
            +++ +  +  A    I E        + +      SE    +G   F +  LK+ +EV 
Sbjct: 15  SQVELIQQQMEAVRATISELEILEKTLSDIQGKD-GSETLVPVGAGSFIKAELKDTSEVI 73

Query: 318 VDTIGGYLAPNPSVIIPHLAKAIQELLQEVKELRDMIDKQNEEHQDVQDMSNT 370
           +    G               A++ +  +  EL   + K  E  + + D+   
Sbjct: 74  MSVGAGVAIKKN------FEDAMESIKSQKNELESTLQKMGENLRAITDIMMK 120


>d2d0ta1 a.266.1.2 (A:12-403) Indoleamine 2,3-dioxygenase {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 392

 Score = 25.7 bits (56), Expect = 6.8
 Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 6/45 (13%)

Query: 318 VDTIGGYLAPNPSVIIPHLAKAIQELLQEVKEL------RDMIDK 356
           +D   G+  PNP   +P        + + + +L      R+ ++K
Sbjct: 6   IDEEVGFALPNPQENLPDFYNDWMFIAKHLPDLIESGQLRERVEK 50


>d1itwa_ c.77.1.2 (A:) Monomeric isocitrate dehydrogenase
           {Azotobacter vinelandii [TaxId: 354]}
          Length = 740

 Score = 25.5 bits (56), Expect = 8.0
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 327 PNPSVIIPHLAKAIQELLQEVKELRDMIDK-QNEEHQDVQ 365
           PN S  +P L  AI+EL Q+  +L D  ++ + +  +DV+
Sbjct: 83  PNISASVPQLKAAIKELQQQGYKLPDYPEEPKTDTEKDVK 122


>d2e50a1 d.305.1.1 (A:1-222) Protein SET {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 222

 Score = 24.9 bits (54), Expect = 10.0
 Identities = 8/28 (28%), Positives = 17/28 (60%)

Query: 336 LAKAIQELLQEVKELRDMIDKQNEEHQD 363
             K  QE ++ + E+++ ID+ NE+  +
Sbjct: 24  SEKEQQEAIEHIDEVQNEIDRLNEQASE 51


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.133    0.387 

Gapped
Lambda     K      H
   0.267   0.0654    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,366,675
Number of extensions: 62755
Number of successful extensions: 236
Number of sequences better than 10.0: 1
Number of HSP's gapped: 236
Number of HSP's successfully gapped: 24
Length of query: 378
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 291
Effective length of database: 1,213,086
Effective search space: 353008026
Effective search space used: 353008026
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.7 bits)