BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254781130|ref|YP_003065543.1| hypothetical protein CLIBASIA_05160 [Candidatus Liberibacter asiaticus str. psy62] (378 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254781130|ref|YP_003065543.1| hypothetical protein CLIBASIA_05160 [Candidatus Liberibacter asiaticus str. psy62] Length = 378 Score = 788 bits (2035), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/378 (100%), Positives = 378/378 (100%) Query: 1 MPRIREVYILPAGSQAYPNSNISSSAYNNLLKDLALDNNSPRPISAGGTAADNAVQARVN 60 MPRIREVYILPAGSQAYPNSNISSSAYNNLLKDLALDNNSPRPISAGGTAADNAVQARVN Sbjct: 1 MPRIREVYILPAGSQAYPNSNISSSAYNNLLKDLALDNNSPRPISAGGTAADNAVQARVN 60 Query: 61 LGTDDASNLTKGKIIANLLPFYPIQQGGGIGQLDNKIYLGWNGTQLLLQVDLSSMREVWT 120 LGTDDASNLTKGKIIANLLPFYPIQQGGGIGQLDNKIYLGWNGTQLLLQVDLSSMREVWT Sbjct: 61 LGTDDASNLTKGKIIANLLPFYPIQQGGGIGQLDNKIYLGWNGTQLLLQVDLSSMREVWT 120 Query: 121 SQLAPRALQNLVDHAHKPNHIVYTTDSNQYAATPLSSFMRKLFSCHNGETLHQAIFQNGA 180 SQLAPRALQNLVDHAHKPNHIVYTTDSNQYAATPLSSFMRKLFSCHNGETLHQAIFQNGA Sbjct: 121 SQLAPRALQNLVDHAHKPNHIVYTTDSNQYAATPLSSFMRKLFSCHNGETLHQAIFQNGA 180 Query: 181 QFYNNSQRIAAFLDDGDIMCYKRQKTVWQGIEIAQHTANIALESTKNCLYKTTVLNMGRG 240 QFYNNSQRIAAFLDDGDIMCYKRQKTVWQGIEIAQHTANIALESTKNCLYKTTVLNMGRG Sbjct: 181 QFYNNSQRIAAFLDDGDIMCYKRQKTVWQGIEIAQHTANIALESTKNCLYKTTVLNMGRG 240 Query: 241 PGYIHFDTDKGAVGCSYFLSDERLKKVHGESSASAREIIEQLKFIDFNYLPESGMDSELR 300 PGYIHFDTDKGAVGCSYFLSDERLKKVHGESSASAREIIEQLKFIDFNYLPESGMDSELR Sbjct: 241 PGYIHFDTDKGAVGCSYFLSDERLKKVHGESSASAREIIEQLKFIDFNYLPESGMDSELR 300 Query: 301 YLIGFSENNLKEINEVFVDTIGGYLAPNPSVIIPHLAKAIQELLQEVKELRDMIDKQNEE 360 YLIGFSENNLKEINEVFVDTIGGYLAPNPSVIIPHLAKAIQELLQEVKELRDMIDKQNEE Sbjct: 301 YLIGFSENNLKEINEVFVDTIGGYLAPNPSVIIPHLAKAIQELLQEVKELRDMIDKQNEE 360 Query: 361 HQDVQDMSNTPLNSQKFD 378 HQDVQDMSNTPLNSQKFD Sbjct: 361 HQDVQDMSNTPLNSQKFD 378 >gi|254781029|ref|YP_003065442.1| chemotaxis sensory transducer [Candidatus Liberibacter asiaticus str. psy62] Length = 1828 Score = 28.9 bits (63), Expect = 0.16, Method: Compositional matrix adjust. Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 4/88 (4%) Query: 265 KKVHGESSASAREIIEQLKFIDFNYLPESGMDSELRYLIGFSENNLKEINEVFVDTIGGY 324 +K+ SSA +EI+ + ID S ++ +R I ENN + +E+ +D I Sbjct: 191 EKMQSISSAVRKEIVLMTEEIDRAISRASELEKTVRSEIEVLENNYTK-SEMRIDNITQN 249 Query: 325 LAPNPSVIIPH---LAKAIQELLQEVKE 349 L II H L +I E+ + +KE Sbjct: 250 LKQEREAIINHGTQLCTSIAEVHESLKE 277 >gi|254780143|ref|YP_003064556.1| DNA-directed RNA polymerase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 1386 Score = 24.3 bits (51), Expect = 3.2, Method: Compositional matrix adjust. Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%) Query: 229 LYKTTVLNMGRGPGYIHFDTDKGAVGCS 256 + + V + R PG IHFD DKG S Sbjct: 149 IQRIVVSQLHRSPG-IHFDHDKGRASLS 175 >gi|254781221|ref|YP_003065634.1| hypothetical protein CLIBASIA_05640 [Candidatus Liberibacter asiaticus str. psy62] Length = 68 Score = 24.3 bits (51), Expect = 3.5, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%) Query: 313 INEVFVDTIGGYLAPNPSVIIP-HLAKAIQEL-LQEVKELRDMIDKQNEEH 361 I + G LA P + P L A+ L L+E KEL+ ++++ EEH Sbjct: 8 IASTLLSLCGCGLADEPKKLNPDQLCDAVCRLTLEEQKELQTKVNQRYEEH 58 >gi|254780615|ref|YP_003065028.1| F0F1 ATP synthase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 478 Score = 24.3 bits (51), Expect = 3.7, Method: Compositional matrix adjust. Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 5/34 (14%) Query: 336 LAKAIQELLQEVKELRDMI-----DKQNEEHQDV 364 +A+ +QE+LQ K L+D+I D+ +EE + V Sbjct: 375 VARRVQEILQRYKSLQDIIAILGMDELSEEDKLV 408 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.316 0.133 0.387 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 245,119 Number of Sequences: 1233 Number of extensions: 10084 Number of successful extensions: 38 Number of sequences better than 100.0: 8 Number of HSP's better than 100.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 33 Number of HSP's gapped (non-prelim): 9 length of query: 378 length of database: 328,796 effective HSP length: 75 effective length of query: 303 effective length of database: 236,321 effective search space: 71605263 effective search space used: 71605263 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 39 (19.6 bits)