Query gi|254781131|ref|YP_003065544.1| hypothetical protein CLIBASIA_05165 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 150
No_of_seqs 117 out of 1622
Neff 7.6
Searched_HMMs 23785
Date Wed Jun 1 01:24:04 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781131.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gud_A NECK appendage protein; 99.6 1.3E-16 5.6E-21 109.2 3.5 75 75-149 1-120 (129)
2 3gw6_A Endo-N-acetylneuraminid 99.6 9.6E-16 4E-20 104.6 5.5 52 68-119 115-181 (275)
3 1yd6_A UVRC; DNA binding prote 16.9 55 0.0023 13.8 1.9 31 76-106 2-33 (99)
4 2ekf_A Ancient ubiquitous prot 12.9 52 0.0022 13.9 0.9 14 106-119 15-28 (61)
5 2ejs_A Autocrine motility fact 9.9 75 0.0031 13.1 0.9 14 106-119 15-28 (58)
6 3njc_A YSLB protein; NESG, PSI 8.3 59 0.0025 13.6 -0.2 14 103-116 117-130 (158)
7 2fao_A Probable ATP-dependent 8.1 1.1E+02 0.0045 12.2 2.2 31 103-133 196-231 (309)
8 1r6u_A Tryptophanyl-tRNA synth 7.0 80 0.0034 12.9 0.0 20 114-135 38-57 (437)
9 2wh6_B BCL-2-like protein 11; 6.7 1.1E+02 0.0047 12.1 0.7 8 107-114 8-15 (26)
10 1y8q_A Ubiquitin-like 1 activa 6.0 73 0.0031 13.1 -0.6 11 105-115 308-318 (346)
No 1
>3gud_A NECK appendage protein; 3-helix bundle, chaperon, chaperone; HET: PEG; 2.20A {Bacillus phage ga-1}
Probab=99.62 E-value=1.3e-16 Score=109.24 Aligned_cols=75 Identities=24% Similarity=0.297 Sum_probs=59.5
Q ss_pred CCHHHCCCCCCCC--------CEEEEEEEECC-------CCCEEEEECHHHHHHHCCCEEEE------------------
Q ss_conf 3513105511245--------32227978718-------98569977567888537801843------------------
Q gi|254781131|r 75 SDRRMKCNVKPVA--------NLYQYRYLSDP-------KNVQRIGVIAQEISKIRPDTVVE------------------ 121 (150)
Q Consensus 75 SD~RLK~NI~~I~--------~l~~~~y~~~~-------~~~~~~GvIAQEVe~v~Pe~V~~------------------ 121 (150)
||+|||+||+++. +|++++|+|+. +...++|||||||++|+|++|..
T Consensus 1 SD~RlK~~I~~~~~~~l~~i~~L~p~~f~w~~~~~~~~~~~~~~~G~iAQev~~v~~~~~~~~~~~~~~~~d~~~~~~~~ 80 (129)
T 3gud_A 1 SDERHKTDIAPISDKVLDAWEKVKFYQYKFKDAVDEKGEEARYHFGVIAQQIVKVFEDEGLSAFDYGLVGYDEWEATEDE 80 (129)
T ss_dssp --CCCCCSCCSCCHHHHHHHTTCCCEEECCHHHHHHHGGGSCCEEECCHHHHHHHHHHTTCCGGGGTSEEEEECCCCCCE
T ss_pred CCHHHCCCCCCCCHHHHHHHHCCCCEEEEEEECCCCCCCCCCEECCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCC
T ss_conf 97644379743980899999728968988654243467777333586354588888761467543114774124345653
Q ss_pred -----------CC-CCEEEEEHHCHHHHHHHHHHHHHHHC
Q ss_conf -----------79-84688862023679999998865403
Q gi|254781131|r 122 -----------NN-QGIKSVDYGRLFNIGQIQTKQKKNTA 149 (150)
Q Consensus 122 -----------~~-dg~~~VdY~~L~~l~~~~~~~~~~~~ 149 (150)
.+ ..+++|+|.+|+++++.+++++-+.+
T Consensus 81 ~~~e~n~~~~~~~~~~~ygvry~el~~~~~a~l~~~i~~l 120 (129)
T 3gud_A 81 YDSEGNLVEKGREAGNIYSIRPTECQWLEMACMRRKLERL 120 (129)
T ss_dssp ECSSSCEEECCCCCCEEEEECHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHH
T ss_conf 2677752455754541722619999999999999999999
No 2
>3gw6_A Endo-N-acetylneuraminidase; chaperone, glycosidase, hydrolase; HET: TAM; 2.60A {Enterobacteria phage K1F}
Probab=99.59 E-value=9.6e-16 Score=104.60 Aligned_cols=52 Identities=15% Similarity=0.029 Sum_probs=41.8
Q ss_pred CCCCCCCCCHHHCCCCCCCC--------CEEEEEEEECC-------CCCEEEEECHHHHHHHCCCEE
Q ss_conf 33210013513105511245--------32227978718-------985699775678885378018
Q gi|254781131|r 68 YQLAPLVSDRRMKCNVKPVA--------NLYQYRYLSDP-------KNVQRIGVIAQEISKIRPDTV 119 (150)
Q Consensus 68 ~~~~~~~SD~RLK~NI~~I~--------~l~~~~y~~~~-------~~~~~~GvIAQEVe~v~Pe~V 119 (150)
+..+..+||+|+|+||++|. .|++++|+|+. +...++|||||||++++|+..
T Consensus 115 ~~~~~~tSD~r~K~~i~~~~~~~l~~i~~l~~~~f~w~~~~~~~~~~~~~~~G~iAqev~~~~~~~g 181 (275)
T 3gw6_A 115 GSNPIVTANGERKTEPVVFDDAFLDAWGDVHYIMYQWLDAVQLKGNDARIHFGVIAQQIRDVFIAHG 181 (275)
T ss_dssp SSCCEEECTTCCBCCCBCCCHHHHHHHTTCCCEEECBHHHHHHHGGGSCBEEECCHHHHHHHHHHTT
T ss_pred CCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCC
T ss_conf 1453201133303576668889999998379579886554334677654213663127888877517
No 3
>1yd6_A UVRC; DNA binding protein; 2.00A {Bacillus caldotenax}
Probab=16.88 E-value=55 Score=13.79 Aligned_cols=31 Identities=13% Similarity=0.164 Sum_probs=18.3
Q ss_pred CHHHCCCCCCCCCEEEEEEEE-CCCCCEEEEE
Q ss_conf 513105511245322279787-1898569977
Q gi|254781131|r 76 DRRMKCNVKPVANLYQYRYLS-DPKNVQRIGV 106 (150)
Q Consensus 76 D~RLK~NI~~I~~l~~~~y~~-~~~~~~~~Gv 106 (150)
|+|||+.|..++.--|+-|-. +.+..-++|=
T Consensus 2 ~e~l~~~l~~lP~~pGVY~f~d~~g~vlYVGK 33 (99)
T 1yd6_A 2 NERLKEKLAVLPEQPGCYLMKDKHGTVIYVGK 33 (99)
T ss_dssp CHHHHHHHHTCCSSCEEEEEECSSCCEEEEEE
T ss_pred CHHHHHHHHHCCCCCEEEEEECCCCCEEEEEC
T ss_conf 48999999868999868999899998999767
No 4
>2ekf_A Ancient ubiquitous protein 1; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=12.88 E-value=52 Score=13.91 Aligned_cols=14 Identities=21% Similarity=0.472 Sum_probs=10.6
Q ss_pred ECHHHHHHHCCCEE
Q ss_conf 75678885378018
Q gi|254781131|r 106 VIAQEISKIRPDTV 119 (150)
Q Consensus 106 vIAQEVe~v~Pe~V 119 (150)
-||+.|+++||.+=
T Consensus 15 ~M~eqV~~mfP~vp 28 (61)
T 2ekf_A 15 TLAQRVKEVLPHVP 28 (61)
T ss_dssp HHHHHHHHHCSSSC
T ss_pred HHHHHHHHHCCCCC
T ss_conf 99999999868998
No 5
>2ejs_A Autocrine motility factor receptor, isoform 2; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=9.86 E-value=75 Score=13.06 Aligned_cols=14 Identities=21% Similarity=0.460 Sum_probs=10.2
Q ss_pred ECHHHHHHHCCCEE
Q ss_conf 75678885378018
Q gi|254781131|r 106 VIAQEISKIRPDTV 119 (150)
Q Consensus 106 vIAQEVe~v~Pe~V 119 (150)
-||+.|++++|.+=
T Consensus 15 ~Mve~V~~~fP~vp 28 (58)
T 2ejs_A 15 AMAHQIQEMFPQVP 28 (58)
T ss_dssp HHHHHHHHHCCSSC
T ss_pred HHHHHHHHHCCCCC
T ss_conf 99999999868999
No 6
>3njc_A YSLB protein; NESG, PSI, structural genomics, protein structure initiative northeast structural genomics consortium, unknown function; 1.69A {Bacillus subtilis subsp}
Probab=8.32 E-value=59 Score=13.61 Aligned_cols=14 Identities=29% Similarity=0.484 Sum_probs=11.7
Q ss_pred EEEECHHHHHHHCC
Q ss_conf 99775678885378
Q gi|254781131|r 103 RIGVIAQEISKIRP 116 (150)
Q Consensus 103 ~~GvIAQEVe~v~P 116 (150)
..|||||.+|...=
T Consensus 117 EAGfIA~~le~~~~ 130 (158)
T 3njc_A 117 EAGFIAEQIQLMND 130 (158)
T ss_dssp HHHHHHHHHHHHCT
T ss_pred EHHHHHHHHHHHHC
T ss_conf 46899999999869
No 7
>2fao_A Probable ATP-dependent DNA ligase; polymerase, primase, NHEJ, hydrolase/transferase complex; 1.50A {Pseudomonas aeruginosa} PDB: 2faq_A* 2far_A*
Probab=8.06 E-value=1.1e+02 Score=12.19 Aligned_cols=31 Identities=26% Similarity=0.352 Sum_probs=24.1
Q ss_pred EEEECHHHHHHHCCCEEEEC-----CCCEEEEEHHC
Q ss_conf 99775678885378018437-----98468886202
Q gi|254781131|r 103 RIGVIAQEISKIRPDTVVEN-----NQGIKSVDYGR 133 (150)
Q Consensus 103 ~~GvIAQEVe~v~Pe~V~~~-----~dg~~~VdY~~ 133 (150)
..-.||+++++.+|+.+... -.|..=|||..
T Consensus 196 fa~~~A~~l~~~~Pd~~t~~~~k~~R~gkVfiDy~q 231 (309)
T 2fao_A 196 FAQAISQHLARLMPERFSAVSGPRNRVGKIFVDYLR 231 (309)
T ss_dssp HHHHHHHHHHHHCTTTEECSCSGGGSTTSEEEECGG
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHCCCCEEEECCC
T ss_conf 999999999886822525664476469858998623
No 8
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, anticodon recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=6.96 E-value=80 Score=12.89 Aligned_cols=20 Identities=35% Similarity=0.635 Sum_probs=0.0
Q ss_pred HCCCEEEECCCCEEEEEHHCHH
Q ss_conf 3780184379846888620236
Q gi|254781131|r 114 IRPDTVVENNQGIKSVDYGRLF 135 (150)
Q Consensus 114 v~Pe~V~~~~dg~~~VdY~~L~ 135 (150)
|-|+-|..... ..|||.||+
T Consensus 38 v~pw~v~~~~~--~~~dy~kl~ 57 (437)
T 1r6u_A 38 VDPWTVQTSSA--KGIDYDKLI 57 (437)
T ss_dssp EETTEEECSCT--TCSCTTTHH
T ss_pred ECCCCCCCCCC--CCCCHHHHH
T ss_conf 78773668876--766799999
No 9
>2wh6_B BCL-2-like protein 11; mitochondrion, early protein, transmembrane, viral protein, apoptosis; 1.50A {Homo sapiens} PDB: 2v6q_B 2nl9_B 3fdl_B 3io8_B 2vm6_B 3io9_B 3d7v_B 3kj1_B 3kz0_C 3kj2_B
Probab=6.72 E-value=1.1e+02 Score=12.08 Aligned_cols=8 Identities=63% Similarity=0.916 Sum_probs=0.0
Q ss_pred CHHHHHHH
Q ss_conf 56788853
Q gi|254781131|r 107 IAQEISKI 114 (150)
Q Consensus 107 IAQEVe~v 114 (150)
||||+..+
T Consensus 8 iaqelrri 15 (26)
T 2wh6_B 8 IAQELRRI 15 (26)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999998
No 10
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*
Probab=6.05 E-value=73 Score=13.12 Aligned_cols=11 Identities=55% Similarity=0.739 Sum_probs=0.0
Q ss_pred EECHHHHHHHC
Q ss_conf 77567888537
Q gi|254781131|r 105 GVIAQEISKIR 115 (150)
Q Consensus 105 GvIAQEVe~v~ 115 (150)
|+.||||-|.+
T Consensus 308 Gi~aQEviK~i 318 (346)
T 1y8q_A 308 GILAQEIVKAL 318 (346)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999996
Done!