Query gi|254781131|ref|YP_003065544.1| hypothetical protein CLIBASIA_05165 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 150 No_of_seqs 117 out of 1622 Neff 7.6 Searched_HMMs 23785 Date Wed Jun 1 01:24:04 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781131.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3gud_A NECK appendage protein; 99.6 1.3E-16 5.6E-21 109.2 3.5 75 75-149 1-120 (129) 2 3gw6_A Endo-N-acetylneuraminid 99.6 9.6E-16 4E-20 104.6 5.5 52 68-119 115-181 (275) 3 1yd6_A UVRC; DNA binding prote 16.9 55 0.0023 13.8 1.9 31 76-106 2-33 (99) 4 2ekf_A Ancient ubiquitous prot 12.9 52 0.0022 13.9 0.9 14 106-119 15-28 (61) 5 2ejs_A Autocrine motility fact 9.9 75 0.0031 13.1 0.9 14 106-119 15-28 (58) 6 3njc_A YSLB protein; NESG, PSI 8.3 59 0.0025 13.6 -0.2 14 103-116 117-130 (158) 7 2fao_A Probable ATP-dependent 8.1 1.1E+02 0.0045 12.2 2.2 31 103-133 196-231 (309) 8 1r6u_A Tryptophanyl-tRNA synth 7.0 80 0.0034 12.9 0.0 20 114-135 38-57 (437) 9 2wh6_B BCL-2-like protein 11; 6.7 1.1E+02 0.0047 12.1 0.7 8 107-114 8-15 (26) 10 1y8q_A Ubiquitin-like 1 activa 6.0 73 0.0031 13.1 -0.6 11 105-115 308-318 (346) No 1 >3gud_A NECK appendage protein; 3-helix bundle, chaperon, chaperone; HET: PEG; 2.20A {Bacillus phage ga-1} Probab=99.62 E-value=1.3e-16 Score=109.24 Aligned_cols=75 Identities=24% Similarity=0.297 Sum_probs=59.5 Q ss_pred CCHHHCCCCCCCC--------CEEEEEEEECC-------CCCEEEEECHHHHHHHCCCEEEE------------------ Q ss_conf 3513105511245--------32227978718-------98569977567888537801843------------------ Q gi|254781131|r 75 SDRRMKCNVKPVA--------NLYQYRYLSDP-------KNVQRIGVIAQEISKIRPDTVVE------------------ 121 (150) Q Consensus 75 SD~RLK~NI~~I~--------~l~~~~y~~~~-------~~~~~~GvIAQEVe~v~Pe~V~~------------------ 121 (150) ||+|||+||+++. +|++++|+|+. +...++|||||||++|+|++|.. T Consensus 1 SD~RlK~~I~~~~~~~l~~i~~L~p~~f~w~~~~~~~~~~~~~~~G~iAQev~~v~~~~~~~~~~~~~~~~d~~~~~~~~ 80 (129) T 3gud_A 1 SDERHKTDIAPISDKVLDAWEKVKFYQYKFKDAVDEKGEEARYHFGVIAQQIVKVFEDEGLSAFDYGLVGYDEWEATEDE 80 (129) T ss_dssp --CCCCCSCCSCCHHHHHHHTTCCCEEECCHHHHHHHGGGSCCEEECCHHHHHHHHHHTTCCGGGGTSEEEEECCCCCCE T ss_pred CCHHHCCCCCCCCHHHHHHHHCCCCEEEEEEECCCCCCCCCCEECCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCC T ss_conf 97644379743980899999728968988654243467777333586354588888761467543114774124345653 Q ss_pred -----------CC-CCEEEEEHHCHHHHHHHHHHHHHHHC Q ss_conf -----------79-84688862023679999998865403 Q gi|254781131|r 122 -----------NN-QGIKSVDYGRLFNIGQIQTKQKKNTA 149 (150) Q Consensus 122 -----------~~-dg~~~VdY~~L~~l~~~~~~~~~~~~ 149 (150) .+ ..+++|+|.+|+++++.+++++-+.+ T Consensus 81 ~~~e~n~~~~~~~~~~~ygvry~el~~~~~a~l~~~i~~l 120 (129) T 3gud_A 81 YDSEGNLVEKGREAGNIYSIRPTECQWLEMACMRRKLERL 120 (129) T ss_dssp ECSSSCEEECCCCCCEEEEECHHHHHHHHHHHHHHHHHTT T ss_pred CCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHH T ss_conf 2677752455754541722619999999999999999999 No 2 >3gw6_A Endo-N-acetylneuraminidase; chaperone, glycosidase, hydrolase; HET: TAM; 2.60A {Enterobacteria phage K1F} Probab=99.59 E-value=9.6e-16 Score=104.60 Aligned_cols=52 Identities=15% Similarity=0.029 Sum_probs=41.8 Q ss_pred CCCCCCCCCHHHCCCCCCCC--------CEEEEEEEECC-------CCCEEEEECHHHHHHHCCCEE Q ss_conf 33210013513105511245--------32227978718-------985699775678885378018 Q gi|254781131|r 68 YQLAPLVSDRRMKCNVKPVA--------NLYQYRYLSDP-------KNVQRIGVIAQEISKIRPDTV 119 (150) Q Consensus 68 ~~~~~~~SD~RLK~NI~~I~--------~l~~~~y~~~~-------~~~~~~GvIAQEVe~v~Pe~V 119 (150) +..+..+||+|+|+||++|. .|++++|+|+. +...++|||||||++++|+.. T Consensus 115 ~~~~~~tSD~r~K~~i~~~~~~~l~~i~~l~~~~f~w~~~~~~~~~~~~~~~G~iAqev~~~~~~~g 181 (275) T 3gw6_A 115 GSNPIVTANGERKTEPVVFDDAFLDAWGDVHYIMYQWLDAVQLKGNDARIHFGVIAQQIRDVFIAHG 181 (275) T ss_dssp SSCCEEECTTCCBCCCBCCCHHHHHHHTTCCCEEECBHHHHHHHGGGSCBEEECCHHHHHHHHHHTT T ss_pred CCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCC T ss_conf 1453201133303576668889999998379579886554334677654213663127888877517 No 3 >1yd6_A UVRC; DNA binding protein; 2.00A {Bacillus caldotenax} Probab=16.88 E-value=55 Score=13.79 Aligned_cols=31 Identities=13% Similarity=0.164 Sum_probs=18.3 Q ss_pred CHHHCCCCCCCCCEEEEEEEE-CCCCCEEEEE Q ss_conf 513105511245322279787-1898569977 Q gi|254781131|r 76 DRRMKCNVKPVANLYQYRYLS-DPKNVQRIGV 106 (150) Q Consensus 76 D~RLK~NI~~I~~l~~~~y~~-~~~~~~~~Gv 106 (150) |+|||+.|..++.--|+-|-. +.+..-++|= T Consensus 2 ~e~l~~~l~~lP~~pGVY~f~d~~g~vlYVGK 33 (99) T 1yd6_A 2 NERLKEKLAVLPEQPGCYLMKDKHGTVIYVGK 33 (99) T ss_dssp CHHHHHHHHTCCSSCEEEEEECSSCCEEEEEE T ss_pred CHHHHHHHHHCCCCCEEEEEECCCCCEEEEEC T ss_conf 48999999868999868999899998999767 No 4 >2ekf_A Ancient ubiquitous protein 1; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=12.88 E-value=52 Score=13.91 Aligned_cols=14 Identities=21% Similarity=0.472 Sum_probs=10.6 Q ss_pred ECHHHHHHHCCCEE Q ss_conf 75678885378018 Q gi|254781131|r 106 VIAQEISKIRPDTV 119 (150) Q Consensus 106 vIAQEVe~v~Pe~V 119 (150) -||+.|+++||.+= T Consensus 15 ~M~eqV~~mfP~vp 28 (61) T 2ekf_A 15 TLAQRVKEVLPHVP 28 (61) T ss_dssp HHHHHHHHHCSSSC T ss_pred HHHHHHHHHCCCCC T ss_conf 99999999868998 No 5 >2ejs_A Autocrine motility factor receptor, isoform 2; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=9.86 E-value=75 Score=13.06 Aligned_cols=14 Identities=21% Similarity=0.460 Sum_probs=10.2 Q ss_pred ECHHHHHHHCCCEE Q ss_conf 75678885378018 Q gi|254781131|r 106 VIAQEISKIRPDTV 119 (150) Q Consensus 106 vIAQEVe~v~Pe~V 119 (150) -||+.|++++|.+= T Consensus 15 ~Mve~V~~~fP~vp 28 (58) T 2ejs_A 15 AMAHQIQEMFPQVP 28 (58) T ss_dssp HHHHHHHHHCCSSC T ss_pred HHHHHHHHHCCCCC T ss_conf 99999999868999 No 6 >3njc_A YSLB protein; NESG, PSI, structural genomics, protein structure initiative northeast structural genomics consortium, unknown function; 1.69A {Bacillus subtilis subsp} Probab=8.32 E-value=59 Score=13.61 Aligned_cols=14 Identities=29% Similarity=0.484 Sum_probs=11.7 Q ss_pred EEEECHHHHHHHCC Q ss_conf 99775678885378 Q gi|254781131|r 103 RIGVIAQEISKIRP 116 (150) Q Consensus 103 ~~GvIAQEVe~v~P 116 (150) ..|||||.+|...= T Consensus 117 EAGfIA~~le~~~~ 130 (158) T 3njc_A 117 EAGFIAEQIQLMND 130 (158) T ss_dssp HHHHHHHHHHHHCT T ss_pred EHHHHHHHHHHHHC T ss_conf 46899999999869 No 7 >2fao_A Probable ATP-dependent DNA ligase; polymerase, primase, NHEJ, hydrolase/transferase complex; 1.50A {Pseudomonas aeruginosa} PDB: 2faq_A* 2far_A* Probab=8.06 E-value=1.1e+02 Score=12.19 Aligned_cols=31 Identities=26% Similarity=0.352 Sum_probs=24.1 Q ss_pred EEEECHHHHHHHCCCEEEEC-----CCCEEEEEHHC Q ss_conf 99775678885378018437-----98468886202 Q gi|254781131|r 103 RIGVIAQEISKIRPDTVVEN-----NQGIKSVDYGR 133 (150) Q Consensus 103 ~~GvIAQEVe~v~Pe~V~~~-----~dg~~~VdY~~ 133 (150) ..-.||+++++.+|+.+... -.|..=|||.. T Consensus 196 fa~~~A~~l~~~~Pd~~t~~~~k~~R~gkVfiDy~q 231 (309) T 2fao_A 196 FAQAISQHLARLMPERFSAVSGPRNRVGKIFVDYLR 231 (309) T ss_dssp HHHHHHHHHHHHCTTTEECSCSGGGSTTSEEEECGG T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHCCCCEEEECCC T ss_conf 999999999886822525664476469858998623 No 8 >1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, anticodon recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A Probab=6.96 E-value=80 Score=12.89 Aligned_cols=20 Identities=35% Similarity=0.635 Sum_probs=0.0 Q ss_pred HCCCEEEECCCCEEEEEHHCHH Q ss_conf 3780184379846888620236 Q gi|254781131|r 114 IRPDTVVENNQGIKSVDYGRLF 135 (150) Q Consensus 114 v~Pe~V~~~~dg~~~VdY~~L~ 135 (150) |-|+-|..... ..|||.||+ T Consensus 38 v~pw~v~~~~~--~~~dy~kl~ 57 (437) T 1r6u_A 38 VDPWTVQTSSA--KGIDYDKLI 57 (437) T ss_dssp EETTEEECSCT--TCSCTTTHH T ss_pred ECCCCCCCCCC--CCCCHHHHH T ss_conf 78773668876--766799999 No 9 >2wh6_B BCL-2-like protein 11; mitochondrion, early protein, transmembrane, viral protein, apoptosis; 1.50A {Homo sapiens} PDB: 2v6q_B 2nl9_B 3fdl_B 3io8_B 2vm6_B 3io9_B 3d7v_B 3kj1_B 3kz0_C 3kj2_B Probab=6.72 E-value=1.1e+02 Score=12.08 Aligned_cols=8 Identities=63% Similarity=0.916 Sum_probs=0.0 Q ss_pred CHHHHHHH Q ss_conf 56788853 Q gi|254781131|r 107 IAQEISKI 114 (150) Q Consensus 107 IAQEVe~v 114 (150) ||||+..+ T Consensus 8 iaqelrri 15 (26) T 2wh6_B 8 IAQELRRI 15 (26) T ss_dssp HHHHHHHH T ss_pred HHHHHHHH T ss_conf 99999998 No 10 >1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* Probab=6.05 E-value=73 Score=13.12 Aligned_cols=11 Identities=55% Similarity=0.739 Sum_probs=0.0 Q ss_pred EECHHHHHHHC Q ss_conf 77567888537 Q gi|254781131|r 105 GVIAQEISKIR 115 (150) Q Consensus 105 GvIAQEVe~v~ 115 (150) |+.||||-|.+ T Consensus 308 Gi~aQEviK~i 318 (346) T 1y8q_A 308 GILAQEIVKAL 318 (346) T ss_dssp HHHHHHHHHHH T ss_pred HHHHHHHHHHH T ss_conf 99999999996 Done!