Query gi|254781131|ref|YP_003065544.1| hypothetical protein CLIBASIA_05165 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 150
No_of_seqs 117 out of 1622
Neff 7.6
Searched_HMMs 13730
Date Wed Jun 1 11:34:40 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781131.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2moba_ d.137.1.1 (A:) Soluble 6.0 80 0.0058 11.6 2.5 21 112-132 27-47 (94)
2 d1xl4a1 b.1.18.16 (A:139-299) 5.7 83 0.0061 11.5 1.7 21 115-135 133-153 (161)
3 d1vjta1 c.2.1.5 (A:-1-191) Put 5.7 84 0.0061 11.5 1.4 30 107-144 144-173 (193)
4 d1hqia_ d.137.1.1 (A:) Phenol 4.0 75 0.0055 11.7 -0.5 32 107-138 18-57 (90)
5 d1dfoa_ c.67.1.4 (A:) Serine h 3.5 1.2E+02 0.009 10.6 1.3 47 92-138 142-189 (416)
6 d1n8va_ a.118.21.1 (A:) Chemos 3.3 66 0.0048 12.0 -1.3 16 107-122 37-52 (101)
7 d1ckva_ d.137.1.1 (A:) Soluble 2.6 1.6E+02 0.012 10.0 2.6 23 108-130 58-80 (141)
8 d1mb4a1 c.2.1.3 (A:1-132,A:355 2.6 1.6E+02 0.012 10.0 0.6 14 70-83 93-106 (147)
9 d2fa8a1 c.47.1.23 (A:4-89) Hyp 2.5 1.6E+02 0.012 9.9 0.4 11 107-117 22-32 (86)
10 d1t4ba1 c.2.1.3 (A:1-133,A:355 2.4 1.7E+02 0.012 9.8 0.6 14 70-83 94-107 (146)
No 1
>d2moba_ d.137.1.1 (A:) Soluble methane monooxygenase regulatory protein B {Methylosinus trichosporium [TaxId: 426]}
Probab=6.02 E-value=80 Score=11.60 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=14.9
Q ss_pred HHHCCCEEEECCCCEEEEEHH
Q ss_conf 853780184379846888620
Q gi|254781131|r 112 SKIRPDTVVENNQGIKSVDYG 132 (150)
Q Consensus 112 e~v~Pe~V~~~~dg~~~VdY~ 132 (150)
++-.|+++..+..+|.-++=.
T Consensus 27 ~~dNP~~~V~d~~~~vrI~a~ 47 (94)
T d2moba_ 27 KAKNPSIVVEDKAGFWWIKAD 47 (94)
T ss_dssp HHTSSCCEEEECSSCEEEEES
T ss_pred CCCCCCEEEEECCCEEEEECC
T ss_conf 024998699835878999129
No 2
>d1xl4a1 b.1.18.16 (A:139-299) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]}
Probab=5.70 E-value=83 Score=11.50 Aligned_cols=21 Identities=19% Similarity=0.357 Sum_probs=15.9
Q ss_pred CCCEEEECCCCEEEEEHHCHH
Q ss_conf 780184379846888620236
Q gi|254781131|r 115 RPDTVVENNQGIKSVDYGRLF 135 (150)
Q Consensus 115 ~Pe~V~~~~dg~~~VdY~~L~ 135 (150)
+-.+|..++||.+.|||.++-
T Consensus 133 F~~~v~~~~dg~~~vD~~~F~ 153 (161)
T d1xl4a1 133 FVDVFTTLPDGRRALDLGKFH 153 (161)
T ss_dssp ECCCEEECTTSCEEECTTSTT
T ss_pred EEEEEEECCCCCEEEEHHHCC
T ss_conf 816589989998997779843
No 3
>d1vjta1 c.2.1.5 (A:-1-191) Putative alpha-glucosidase TM0752 {Thermotoga maritima [TaxId: 2336]}
Probab=5.68 E-value=84 Score=11.49 Aligned_cols=30 Identities=13% Similarity=0.155 Sum_probs=19.3
Q ss_pred CHHHHHHHCCCEEEECCCCEEEEEHHCHHHHHHHHHHH
Q ss_conf 56788853780184379846888620236799999988
Q gi|254781131|r 107 IAQEISKIRPDTVVENNQGIKSVDYGRLFNIGQIQTKQ 144 (150)
Q Consensus 107 IAQEVe~v~Pe~V~~~~dg~~~VdY~~L~~l~~~~~~~ 144 (150)
+|.||++.+|.++.- +|.+=..+..++...
T Consensus 144 ~A~ei~~~~P~A~vl--------~~tNP~~~~t~a~~~ 173 (193)
T d1vjta1 144 IAEKMKKMAPKAYLM--------QTANPVFEITQAVRR 173 (193)
T ss_dssp HHHHHHHHCTTCEEE--------ECSSCHHHHHHHHHH
T ss_pred HHHHHHHCCCCCEEE--------EECCHHHHHHHHHHH
T ss_conf 999998519960799--------965938999999985
No 4
>d1hqia_ d.137.1.1 (A:) Phenol hydroxylase P2 protein {Pseudomonas sp., CF600 [TaxId: 306]}
Probab=4.02 E-value=75 Score=11.75 Aligned_cols=32 Identities=13% Similarity=0.113 Sum_probs=16.8
Q ss_pred CHHHHHHHCCCEEEECCC--------CEEEEEHHCHHHHH
Q ss_conf 567888537801843798--------46888620236799
Q gi|254781131|r 107 IAQEISKIRPDTVVENNQ--------GIKSVDYGRLFNIG 138 (150)
Q Consensus 107 IAQEVe~v~Pe~V~~~~d--------g~~~VdY~~L~~l~ 138 (150)
|+..+++-.|+++.++.. |.+.++...+-..|
T Consensus 18 vveai~~dnP~~~V~d~~a~vrI~a~g~L~i~~~tieE~L 57 (90)
T d1hqia_ 18 VVEAIIQDNPHAVVQHHPAMIRIEAEKRLEIRRETVEENL 57 (90)
T ss_dssp HHHHHHHHSSSCCCCCCSSCBCCCCSSEEEECHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEECCCEEEEECCCEEEEEHHHHHHHH
T ss_conf 9999983787989982587899903985999878989985
No 5
>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]}
Probab=3.52 E-value=1.2e+02 Score=10.57 Aligned_cols=47 Identities=13% Similarity=0.246 Sum_probs=21.9
Q ss_pred EEEEECCCCCEEEEECHHHHHHHCCCEEEECCCCEE-EEEHHCHHHHH
Q ss_conf 797871898569977567888537801843798468-88620236799
Q gi|254781131|r 92 YRYLSDPKNVQRIGVIAQEISKIRPDTVVENNQGIK-SVDYGRLFNIG 138 (150)
Q Consensus 92 ~~y~~~~~~~~~~GvIAQEVe~v~Pe~V~~~~dg~~-~VdY~~L~~l~ 138 (150)
+.|..++++..++--++...++.-|.++.-...-|. -+||.++-.++
T Consensus 142 ~~y~~d~~~~IDyd~l~~~a~~~kPklIi~G~S~y~r~~d~~~~reia 189 (416)
T d1dfoa_ 142 VPYGIDATGHIDYADLEKQAKEHKPKMIIGGFSAYSGVVDWAKMREIA 189 (416)
T ss_dssp EEECBCSSSSBCHHHHHHHHHHHCCSEEEEECSSCCSCCCHHHHHHHH
T ss_pred EECCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHH
T ss_conf 964668766744789999999836564873432255655879999998
No 6
>d1n8va_ a.118.21.1 (A:) Chemosensory protein Csp2 {Cabbage moth (Mamestra brassicae) [TaxId: 55057]}
Probab=3.26 E-value=66 Score=12.03 Aligned_cols=16 Identities=13% Similarity=0.214 Sum_probs=11.7
Q ss_pred CHHHHHHHCCCEEEEC
Q ss_conf 5678885378018437
Q gi|254781131|r 107 IAQEISKIRPDTVVEN 122 (150)
Q Consensus 107 IAQEVe~v~Pe~V~~~ 122 (150)
.+.|+.+++|||+.+.
T Consensus 37 egk~lK~~lPeal~t~ 52 (101)
T d1n8va_ 37 EGKELKEHLQDAIENG 52 (101)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCC
T ss_conf 8999999849998714
No 7
>d1ckva_ d.137.1.1 (A:) Soluble methane monooxygenase regulatory protein B {Escherichia coli [TaxId: 562]}
Probab=2.57 E-value=1.6e+02 Score=9.98 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=0.0
Q ss_pred HHHHHHHCCCEEEECCCCEEEEE
Q ss_conf 67888537801843798468886
Q gi|254781131|r 108 AQEISKIRPDTVVENNQGIKSVD 130 (150)
Q Consensus 108 AQEVe~v~Pe~V~~~~dg~~~Vd 130 (150)
+.+-.+--|++|.+|..+|.-++
T Consensus 58 ~~~~dn~nP~a~V~dr~ayvrId 80 (141)
T d1ckva_ 58 TDYKKNVNPTVNVEDRAGYWWIK 80 (141)
T ss_dssp HHHHHHTCSCCEEEECSSSEEEE
T ss_pred HHHCCCCCCCEEEECCCCEEEEE
T ss_conf 43003899947996168579991
No 8
>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}
Probab=2.57 E-value=1.6e+02 Score=9.98 Aligned_cols=14 Identities=21% Similarity=0.107 Sum_probs=0.0
Q ss_pred CCCCCCCHHHCCCC
Q ss_conf 21001351310551
Q gi|254781131|r 70 LAPLVSDRRMKCNV 83 (150)
Q Consensus 70 ~~~~~SD~RLK~NI 83 (150)
.+-.+||.|++.++
T Consensus 93 VIDlSsdfR~~~dv 106 (147)
T d1mb4a1 93 WIDAASTLRMDKEA 106 (147)
T ss_dssp EEESSSTTTTCTTE
T ss_pred EEECCCCCCCCCCC
T ss_conf 99588544233883
No 9
>d2fa8a1 c.47.1.23 (A:4-89) Hypothetical protein Atu0228 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=2.55 E-value=1.6e+02 Score=9.95 Aligned_cols=11 Identities=36% Similarity=0.353 Sum_probs=0.0
Q ss_pred CHHHHHHHCCC
Q ss_conf 56788853780
Q gi|254781131|r 107 IAQEISKIRPD 117 (150)
Q Consensus 107 IAQEVe~v~Pe 117 (150)
||||+..-+|+
T Consensus 22 laqeLl~tF~~ 32 (86)
T d2fa8a1 22 MAQEILQTFAS 32 (86)
T ss_dssp HHHHHHHHHGG
T ss_pred HHHHHHHHCCC
T ss_conf 99999986776
No 10
>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}
Probab=2.45 E-value=1.7e+02 Score=9.84 Aligned_cols=14 Identities=29% Similarity=0.204 Sum_probs=0.0
Q ss_pred CCCCCCCHHHCCCC
Q ss_conf 21001351310551
Q gi|254781131|r 70 LAPLVSDRRMKCNV 83 (150)
Q Consensus 70 ~~~~~SD~RLK~NI 83 (150)
.+..+||.|+++|+
T Consensus 94 VID~Ss~fR~~~dv 107 (146)
T d1t4ba1 94 WIDAASSLRMKDDA 107 (146)
T ss_dssp EEECSSTTTTCTTE
T ss_pred CCCCCCCCCCCCCC
T ss_conf 23687422268998
Done!