RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254781131|ref|YP_003065544.1| hypothetical protein
CLIBASIA_05165 [Candidatus Liberibacter asiaticus str. psy62]
         (150 letters)



>3gw6_A Endo-N-acetylneuraminidase; chaperone, glycosidase,
           hydrolase; HET: TAM; 2.60A {Enterobacteria phage K1F}
           (A:109-200,A:241-275)
          Length = 127

 Score = 55.4 bits (133), Expect = 4e-09
 Identities = 11/75 (14%), Positives = 23/75 (30%), Gaps = 16/75 (21%)

Query: 75  SDRRMKCNVKPVAN----------LYQYRYLSDPK-----NVQRIGVIAQEISKIRPDTV 119
           ++   K       +             Y++L   +          GVIAQ+I  +     
Sbjct: 14  ANGERKTEPVVFDDAFLDAWGDVHYIMYQWLDAVQLKGNDARIHFGVIAQQIRDVFIAHG 73

Query: 120 VENNQGIKSVDYGRL 134
           +  ++   +  Y  L
Sbjct: 74  LM-DENSTNCRYAVL 87


>3gud_A NECK appendage protein; 3-helix bundle, chaperon, chaperone;
           HET: PEG; 2.20A {Bacillus phage ga-1} (A:)
          Length = 129

 Score = 36.2 bits (83), Expect = 0.002
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 15/62 (24%)

Query: 75  SDRRMKCNVKPVAN----------LYQYRYLSD-----PKNVQRIGVIAQEISKIRPDTV 119
           SD R K ++ P+++           YQY++         +     GVIAQ+I K+  D  
Sbjct: 1   SDERHKTDIAPISDKVLDAWEKVKFYQYKFKDAVDEKGEEARYHFGVIAQQIVKVFEDEG 60

Query: 120 VE 121
           + 
Sbjct: 61  LS 62


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.316    0.133    0.371 

Gapped
Lambda     K      H
   0.267   0.0570    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,057,820
Number of extensions: 43356
Number of successful extensions: 57
Number of sequences better than 10.0: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 2
Length of query: 150
Length of database: 4,956,049
Length adjustment: 81
Effective length of query: 69
Effective length of database: 2,217,844
Effective search space: 153031236
Effective search space used: 153031236
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.4 bits)