RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781131|ref|YP_003065544.1| hypothetical protein
CLIBASIA_05165 [Candidatus Liberibacter asiaticus str. psy62]
         (150 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 34.1 bits (78), Expect = 0.013
 Identities = 26/171 (15%), Positives = 45/171 (26%), Gaps = 64/171 (37%)

Query: 2   DQKQQAFHEILSL---------MQNVTVPKLPISLNNPTPIAPIDYAGIAQNIYQNQLSE 52
             K   F ++L+L         ++   +  L   L                      L +
Sbjct: 74  PSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTT---------------LVK 118

Query: 53  RKEGKKEFYDAVNMGYQ---------LAPLVSDRRMKCNVKPVA---------------- 87
            KE  K +  A  M  +         L   V +     N + VA                
Sbjct: 119 TKELIKNYITARIMAKRPFDKKSNSALFRAVGEG----NAQLVAIFGGQGNTDDYFEELR 174

Query: 88  NLYQ-YRYLSDPKNVQRIGVIAQEISKIRPDTVVENNQGIKSVDYGRLFNI 137
           +LYQ Y  L     ++       E+ +             + V + +  NI
Sbjct: 175 DLYQTYHVLVGDL-IKFSAETLSELIR-TTLDA-------EKV-FTQGLNI 215


>3gud_A NECK appendage protein; 3-helix bundle, chaperon, chaperone; HET:
           PEG; 2.20A {Bacillus phage ga-1}
          Length = 129

 Score = 27.3 bits (60), Expect = 1.5
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 15/65 (23%)

Query: 75  SDRRMKCNVKPVANL----------YQYRYLS-----DPKNVQRIGVIAQEISKIRPDTV 119
           SD R K ++ P+++           YQY++         +     GVIAQ+I K+  D  
Sbjct: 1   SDERHKTDIAPISDKVLDAWEKVKFYQYKFKDAVDEKGEEARYHFGVIAQQIVKVFEDEG 60

Query: 120 VENNQ 124
           +    
Sbjct: 61  LSAFD 65


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 26.9 bits (58), Expect = 1.9
 Identities = 7/25 (28%), Positives = 13/25 (52%), Gaps = 3/25 (12%)

Query: 4  KQQAFHEI---LSLMQNVTVPKLPI 25
          ++QA  ++   L L  + + P L I
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAI 42


>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A
           {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A*
           2br5_A* 2br4_A* 2br3_A*
          Length = 236

 Score = 26.6 bits (58), Expect = 2.4
 Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 87  ANLYQYRYLSDP--KNVQRIGVIAQEISKIRPDTVVE 121
           ++   Y++      K+     V    + ++RP T+VE
Sbjct: 51  SDFSPYQWRGLRMLKDPDTQAVYHDMLWELRPRTIVE 87


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.316    0.133    0.371 

Gapped
Lambda     K      H
   0.267   0.0532    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,209,739
Number of extensions: 50693
Number of successful extensions: 78
Number of sequences better than 10.0: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 7
Length of query: 150
Length of database: 5,693,230
Length adjustment: 84
Effective length of query: 66
Effective length of database: 3,656,734
Effective search space: 241344444
Effective search space used: 241344444
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.3 bits)