BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781131|ref|YP_003065544.1| hypothetical protein
CLIBASIA_05165 [Candidatus Liberibacter asiaticus str. psy62]
         (150 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781131|ref|YP_003065544.1| hypothetical protein CLIBASIA_05165 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 150

 Score =  306 bits (784), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 150/150 (100%), Positives = 150/150 (100%)

Query: 1   MDQKQQAFHEILSLMQNVTVPKLPISLNNPTPIAPIDYAGIAQNIYQNQLSERKEGKKEF 60
           MDQKQQAFHEILSLMQNVTVPKLPISLNNPTPIAPIDYAGIAQNIYQNQLSERKEGKKEF
Sbjct: 1   MDQKQQAFHEILSLMQNVTVPKLPISLNNPTPIAPIDYAGIAQNIYQNQLSERKEGKKEF 60

Query: 61  YDAVNMGYQLAPLVSDRRMKCNVKPVANLYQYRYLSDPKNVQRIGVIAQEISKIRPDTVV 120
           YDAVNMGYQLAPLVSDRRMKCNVKPVANLYQYRYLSDPKNVQRIGVIAQEISKIRPDTVV
Sbjct: 61  YDAVNMGYQLAPLVSDRRMKCNVKPVANLYQYRYLSDPKNVQRIGVIAQEISKIRPDTVV 120

Query: 121 ENNQGIKSVDYGRLFNIGQIQTKQKKNTAQ 150
           ENNQGIKSVDYGRLFNIGQIQTKQKKNTAQ
Sbjct: 121 ENNQGIKSVDYGRLFNIGQIQTKQKKNTAQ 150


>gi|254780707|ref|YP_003065120.1| putative phosphate-binding periplasmic protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 346

 Score = 27.7 bits (60), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 27/56 (48%)

Query: 36  IDYAGIAQNIYQNQLSERKEGKKEFYDAVNMGYQLAPLVSDRRMKCNVKPVANLYQ 91
           ID    ++ I QN+L E K+        V +G+    LVSDR M      V +LY+
Sbjct: 80  IDIVNSSRKITQNELDECKKHGVSDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYK 135


>gi|254780942|ref|YP_003065355.1| UDP-N-acetylglucosamine pyrophosphorylase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 442

 Score = 23.9 bits (50), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 4/61 (6%)

Query: 61  YDAVNMGYQLAPLVSDRRMKCNVKPVANLYQYRYLS----DPKNVQRIGVIAQEISKIRP 116
           YD V + Y   PLVS   +K  +  +A  Y    +     +PK   R+ +   EI  IR 
Sbjct: 98  YDDVIIMYGDVPLVSSHTLKKAMDKIAQGYSIAVVGFNADNPKGYGRLLIKNNEIIAIRE 157

Query: 117 D 117
           +
Sbjct: 158 E 158


>gi|254780217|ref|YP_003064630.1| DNA polymerase III subunit delta' [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 347

 Score = 23.9 bits (50), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 14 LMQNVTVPKLPISLNNPTPIAPI 36
          ++QN    K P+ + NP P +P 
Sbjct: 58 VLQNPDFSKAPVRMCNPDPCSPF 80


>gi|254780464|ref|YP_003064877.1| M16 family peptidase [Candidatus Liberibacter asiaticus str.
          psy62]
          Length = 424

 Score = 23.5 bits (49), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 17 NVTVPKLPISLNNPTPIAPIDYAGIAQNIYQNQLSERKE 55
          N+ + K    +   T + PID A +  NI     +ER+E
Sbjct: 2  NLRISKTSSGITVITEVMPIDSAFVKVNIRAGSRNERQE 40


>gi|254780836|ref|YP_003065249.1| putative type I restriction-modification system DNA methylase
          [Candidatus Liberibacter asiaticus str. psy62]
          Length = 674

 Score = 22.7 bits (47), Expect = 2.9,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 19/36 (52%)

Query: 61 YDAVNMGYQLAPLVSDRRMKCNVKPVANLYQYRYLS 96
          +   + G  + P    RR++C ++P  +  + +YL+
Sbjct: 26 FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61


>gi|254780507|ref|YP_003064920.1| hypothetical protein CLIBASIA_01970 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 176

 Score = 21.6 bits (44), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 69 QLAPLVSDRRMKCNVKPVANLYQYRYLSDP 98
          +L+ +V+D + +  +K +A  Y Y  LS P
Sbjct: 68 KLSFIVNDSQERSYLKEIATDYLYTLLSGP 97


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.316    0.133    0.371 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,268
Number of Sequences: 1233
Number of extensions: 3599
Number of successful extensions: 8
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 8
length of query: 150
length of database: 328,796
effective HSP length: 67
effective length of query: 83
effective length of database: 246,185
effective search space: 20433355
effective search space used: 20433355
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 34 (17.7 bits)