Query gi|254781132|ref|YP_003065545.1| hypothetical protein CLIBASIA_05170 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 31
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Wed Jun 1 22:33:47 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781132.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3c7a_A Octopine dehydrogenase 61.4 7.8 0.00023 20.1 3.1 26 2-28 26-51 (142)
2 >1d2v_C Myeloperoxidase; heme- 9.8 1.8E+02 0.0052 13.9 2.1 30 2-31 51-80 (144)
3 >1u84_A Hypothetical protein; 9.7 1.4E+02 0.0042 14.4 1.4 22 3-24 21-43 (90)
4 >1q4g_A Prostaglandin G/H synt 7.7 1.5E+02 0.0044 14.2 0.9 30 2-31 131-160 (289)
5 >3cdi_A Polynucleotide phospho 6.7 2.5E+02 0.0074 13.2 1.7 28 3-30 52-79 (85)
6 >1cvu_A Prostaglandin H2 synth 6.6 1.8E+02 0.0054 13.8 0.9 30 2-31 131-160 (216)
7 >1ydi_A Vinculin isoform VCL; 5.7 2.9E+02 0.0085 12.9 1.6 18 13-30 115-132 (139)
8 >1wzz_A Probable endoglucanase 5.5 2.7E+02 0.008 13.1 1.3 20 5-24 121-140 (141)
9 >3aaf_A Werner syndrome ATP-de 4.9 3.2E+02 0.0096 12.7 1.7 11 14-24 2-12 (97)
10 >1z68_A Fibroblast activation 4.6 2.3E+02 0.0068 13.4 0.4 10 3-12 3-13 (40)
No 1
>>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* (A:205-269,A:328-404)
Probab=61.35 E-value=7.8 Score=20.06 Aligned_cols=26 Identities=31% Similarity=0.585 Sum_probs=21.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 888413211134689999997667653
Q gi|254781132|r 2 ENPLWYSHEYDDEAKDLVSAVSRDLIT 28 (31)
Q Consensus 2 enplwysheyddeakdlvsavsrdlit 28 (31)
|.||+|. .-++.+-++.|+||..++.
T Consensus 26 EkPLFYq-gl~e~~A~lL~~vS~E~~~ 51 (142)
T 3c7a_A 26 EAPLFYQ-GIDQATADMLTACSNECKD 51 (142)
T ss_dssp SCCBSGG-GCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHC-CCCHHHHHHHHHHHHHHHH
T ss_conf 4430022-6998999999999999999
No 2
>>1d2v_C Myeloperoxidase; heme-protein, oxidoreductase, peroxidase- bromide complex; HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} (C:105-185,C:404-466)
Probab=9.76 E-value=1.8e+02 Score=13.92 Aligned_cols=30 Identities=30% Similarity=0.546 Sum_probs=24.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 888413211134689999997667653169
Q gi|254781132|r 2 ENPLWYSHEYDDEAKDLVSAVSRDLITKDY 31 (31)
Q Consensus 2 enplwysheyddeakdlvsavsrdlitkdy 31 (31)
.||-|-..+-=.||+..|.|.-..++..+|
T Consensus 51 ~np~w~de~lFqeAR~iv~a~~Q~I~~~e~ 80 (144)
T 1d2v_C 51 LNPRWDGERLYQEARKIVGAMVQIITYRDY 80 (144)
T ss_dssp HCTTCCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 589998789999999999999857139987
No 3
>>1u84_A Hypothetical protein; structural genomics, protein structure initiative, MCSG, PSI midwest center for structural genomics; 1.60A {Geobacillus stearothermophilus} (A:)
Probab=9.66 E-value=1.4e+02 Score=14.35 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=15.9
Q ss_pred CCCCCCC-CCCHHHHHHHHHHHH
Q ss_conf 8841321-113468999999766
Q gi|254781132|r 3 NPLWYSH-EYDDEAKDLVSAVSR 24 (31)
Q Consensus 3 nplwysh-eyddeakdlvsavsr 24 (31)
+|+-|.. -|+.|+-|.+.||+.
T Consensus 21 DPF~~G~~~YetE~~dvv~Av~~ 43 (90)
T 1u84_A 21 DPFGLGKDAYDVEAASVLQAVYE 43 (90)
T ss_dssp CTTSSCGGGGHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 96456853112379999999980
No 4
>>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxidase, prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} (A:158-406,A:514-553)
Probab=7.71 E-value=1.5e+02 Score=14.24 Aligned_cols=30 Identities=17% Similarity=0.438 Sum_probs=23.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 888413211134689999997667653169
Q gi|254781132|r 2 ENPLWYSHEYDDEAKDLVSAVSRDLITKDY 31 (31)
Q Consensus 2 enplwysheyddeakdlvsavsrdlitkdy 31 (31)
+||-|...+-=.||+-+|.|.-.-++..||
T Consensus 131 ~np~w~DE~LFqeAR~Iv~a~~Q~Iv~~Ey 160 (289)
T 1q4g_A 131 EHPTWGDEQLFQTARLILIGETIKIVIEEY 160 (289)
T ss_dssp HCTTCCHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHEEEEHHHH
T ss_conf 489988889999999999988345328766
No 5
>>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A (A:240-324)
Probab=6.65 E-value=2.5e+02 Score=13.23 Aligned_cols=28 Identities=11% Similarity=0.106 Sum_probs=18.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 8841321113468999999766765316
Q gi|254781132|r 3 NPLWYSHEYDDEAKDLVSAVSRDLITKD 30 (31)
Q Consensus 3 nplwysheyddeakdlvsavsrdlitkd 30 (31)
+|-|...+....-+++.+.+.|.+|..+
T Consensus 52 ~~~~~~~~i~~~~~~l~k~~vR~~Il~~ 79 (85)
T 3cdi_A 52 DETLDENELGEILHAIEKNVVRSRVLAG 79 (85)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 6688999999999999999999998736
No 6
>>1cvu_A Prostaglandin H2 synthase-2; COX-2, cyclooxygenase, prostaglandin, arachidonate, endoperoxide, oxidoreductase; HET: NAG MAN BOG ACD; 2.40A {Mus musculus} (A:158-334,A:514-552)
Probab=6.59 E-value=1.8e+02 Score=13.83 Aligned_cols=30 Identities=20% Similarity=0.434 Sum_probs=23.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 888413211134689999997667653169
Q gi|254781132|r 2 ENPLWYSHEYDDEAKDLVSAVSRDLITKDY 31 (31)
Q Consensus 2 enplwysheyddeakdlvsavsrdlitkdy 31 (31)
+||-|-..+-=.||+.+|.|.-.-.+..||
T Consensus 131 ~np~w~DE~LFq~AR~Iv~a~~Q~Ivy~Ey 160 (216)
T 1cvu_A 131 EHPEWGDEQLFQTSKLILIGETIKIVIEDY 160 (216)
T ss_dssp HCTTCCHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 589988889999999999999878449977
No 7
>>1ydi_A Vinculin isoform VCL; cell adhesion, structural protein; 1.80A {Homo sapiens} PDB: 2gww_A 2hsq_A 2ibf_A 1syq_A 1rke_A 1rkc_A 1zvz_A 1zw2_A 1zw3_A 1u6h_A 1xwj_A 2gdc_A 1t01_A (A:1-133,A:258-263)
Probab=5.68 E-value=2.9e+02 Score=12.95 Aligned_cols=18 Identities=33% Similarity=0.440 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHCC
Q ss_conf 468999999766765316
Q gi|254781132|r 13 DEAKDLVSAVSRDLITKD 30 (31)
Q Consensus 13 deakdlvsavsrdlitkd 30 (31)
.-|+.|.++|+|=|+.-|
T Consensus 115 raAR~lL~~vt~lLllaD 132 (139)
T 1ydi_A 115 DGSRGILSGTSDLLLTFD 132 (139)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999988
No 8
>>1wzz_A Probable endoglucanase; glycoside hydrolase family 8 (GH-8), (alpha/alpha)6 barrel, structural genomics; 1.65A {Gluconacetobacter xylinus} (A:1-141)
Probab=5.50 E-value=2.7e+02 Score=13.06 Aligned_cols=20 Identities=15% Similarity=0.238 Sum_probs=15.7
Q ss_pred CCCCCCCCHHHHHHHHHHHH
Q ss_conf 41321113468999999766
Q gi|254781132|r 5 LWYSHEYDDEAKDLVSAVSR 24 (31)
Q Consensus 5 lwysheyddeakdlvsavsr 24 (31)
.|-+.+|..+|+.+..++-+
T Consensus 121 ~Wg~~~Y~~~A~~l~~~i~~ 140 (141)
T 1wzz_A 121 RFQRPDYIQDAXAIYGDVLN 140 (141)
T ss_dssp HHTCHHHHHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHHH
T ss_conf 86981389999999999998
No 9
>>3aaf_A Werner syndrome ATP-dependent helicase; helix-turn-helix, winged-helix, protein-DNA complex, DNA- binding, helicase; HET: DNA; 1.90A {Homo sapiens} PDB: 2axl_A (A:16-112)
Probab=4.91 E-value=3.2e+02 Score=12.70 Aligned_cols=11 Identities=45% Similarity=0.401 Sum_probs=6.9
Q ss_pred HHHHHHHHHHH
Q ss_conf 68999999766
Q gi|254781132|r 14 EAKDLVSAVSR 24 (31)
Q Consensus 14 eakdlvsavsr 24 (31)
||+.++|+|.|
T Consensus 2 EA~~ils~V~~ 12 (97)
T 3aaf_A 2 QAFKLLSAVDI 12 (97)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
No 10
>>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} (A:18-57)
Probab=4.58 E-value=2.3e+02 Score=13.39 Aligned_cols=10 Identities=50% Similarity=0.860 Sum_probs=6.0
Q ss_pred CCCCCC-CCCC
Q ss_conf 884132-1113
Q gi|254781132|r 3 NPLWYS-HEYD 12 (31)
Q Consensus 3 nplwys-heyd 12 (31)
+|.|-| |||-
T Consensus 3 ~~~WiS~~EYl 13 (40)
T 1z68_A 3 FPNWISGQEYL 13 (40)
T ss_dssp CCEESSSSEEE
T ss_pred CCCCCCCCEEE
T ss_conf 65256898599
Done!