Query gi|254781132|ref|YP_003065545.1| hypothetical protein CLIBASIA_05170 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 31
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Wed Jun 1 01:13:25 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781132.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1u84_A Hypothetical protein; s 10.3 93 0.0039 14.5 1.5 21 4-24 22-43 (90)
2 2q8v_A NBLA protein; phycobili 4.6 2.4E+02 0.01 12.6 1.8 19 12-30 32-50 (63)
3 2au5_A Conserved domain protei 4.2 2.6E+02 0.011 12.4 2.5 23 9-31 15-40 (139)
4 1qa4_A Protein (HIV-1 NEF anch 3.7 79 0.0033 14.8 -1.8 13 15-27 25-37 (57)
5 1q4g_A Prostaglandin G/H synth 3.5 2.9E+02 0.012 12.2 0.9 30 2-31 288-317 (553)
6 3e21_A HFAF1, FAS-associated f 2.6 2.9E+02 0.012 12.2 0.2 10 17-26 34-43 (45)
7 2crb_A Nuclear receptor bindin 2.5 2.9E+02 0.012 12.2 0.0 20 1-20 8-27 (97)
8 1joy_A Protein (ENVZ_ecoli); h 2.4 3.9E+02 0.016 11.6 0.6 19 10-28 7-25 (67)
9 1g3k_A ATP-dependent protease 2.4 4.2E+02 0.018 11.5 1.2 20 12-31 142-166 (174)
10 1aoy_A Arginine repressor; DNA 2.3 4.3E+02 0.018 11.4 1.0 7 20-26 44-50 (78)
No 1
>1u84_A Hypothetical protein; structural genomics, protein structure initiative, MCSG, PSI midwest center for structural genomics; 1.60A {Geobacillus stearothermophilus} SCOP: a.230.1.1
Probab=10.28 E-value=93 Score=14.47 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=15.8
Q ss_pred CCCCC-CCCCHHHHHHHHHHHH
Q ss_conf 84132-1113468999999766
Q gi|254781132|r 4 PLWYS-HEYDDEAKDLVSAVSR 24 (31)
Q Consensus 4 plwys-heyddeakdlvsavsr 24 (31)
|+-|. ..|+-|+-|.+.||++
T Consensus 22 Pf~~G~d~YetE~~dvv~av~~ 43 (90)
T 1u84_A 22 PFGLGKDAYDVEAASVLQAVYE 43 (90)
T ss_dssp TTSSCGGGGHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHH
T ss_conf 8778976454379999999994
No 2
>2q8v_A NBLA protein; phycobilisome, nutrient starvation, disassembly, bleaching, protein binding; 2.50A {Thermosynechococcus vulcanus} PDB: 2qdo_A
Probab=4.56 E-value=2.4e+02 Score=12.57 Aligned_cols=19 Identities=42% Similarity=0.503 Sum_probs=15.0
Q ss_pred CHHHHHHHHHHHHHHHHCC
Q ss_conf 3468999999766765316
Q gi|254781132|r 12 DDEAKDLVSAVSRDLITKD 30 (31)
Q Consensus 12 ddeakdlvsavsrdlitkd 30 (31)
-.+|..|+--+||-|..||
T Consensus 32 ~eqa~ElLlq~sRllMiKd 50 (63)
T 2q8v_A 32 LQEARELLLQASRLLMMKD 50 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999998
No 3
>2au5_A Conserved domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Enterococcus faecalis V583} SCOP: a.244.1.1
Probab=4.23 E-value=2.6e+02 Score=12.44 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=16.8
Q ss_pred CCCCHHHHHHHH---HHHHHHHHCCC
Q ss_conf 111346899999---97667653169
Q gi|254781132|r 9 HEYDDEAKDLVS---AVSRDLITKDY 31 (31)
Q Consensus 9 heyddeakdlvs---avsrdlitkdy 31 (31)
.+|.|+.....+ |.||.+.|.||
T Consensus 15 F~Y~~~~~~FL~N~LAFs~G~~T~D~ 40 (139)
T 2au5_A 15 FEYEEITRSFLSNMLAFTRGHFTGDI 40 (139)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 52289999999987998752104651
No 4
>1qa4_A Protein (HIV-1 NEF anchor domain (2-57)); AIDS, regulatory factor, negative factor, myristoylation, myristylation, viral protein; NMR {Synthetic} SCOP: j.52.1.1 PDB: 1qa5_A* 1zec_A
Probab=3.67 E-value=79 Score=14.79 Aligned_cols=13 Identities=62% Similarity=0.552 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 8999999766765
Q gi|254781132|r 15 AKDLVSAVSRDLI 27 (31)
Q Consensus 15 akdlvsavsrdli 27 (31)
|-+-|.|+|+||-
T Consensus 25 AaegVga~SqDL~ 37 (57)
T 1qa4_A 25 AADGVGAASRDLE 37 (57)
T ss_dssp CCCSCCSCCHHHH
T ss_pred CCCCCCCCCCCHH
T ss_conf 7565463420276
No 5
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxidase, prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 1pth_A* 1u67_A* 1ht8_A* 1ebv_A* 1ht5_A* 1prh_A*
Probab=3.45 E-value=2.9e+02 Score=12.24 Aligned_cols=30 Identities=17% Similarity=0.438 Sum_probs=16.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 888413211134689999997667653169
Q gi|254781132|r 2 ENPLWYSHEYDDEAKDLVSAVSRDLITKDY 31 (31)
Q Consensus 2 enplwysheyddeakdlvsavsrdlitkdy 31 (31)
+||-|...+-=.||+-+|.|.-...+..||
T Consensus 288 ~nP~W~DE~LFQeAR~Ivia~~q~I~~~Ey 317 (553)
T 1q4g_A 288 EHPTWGDEQLFQTARLILIGETIKIVIEEY 317 (553)
T ss_dssp HCTTCCHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 589998889999999999999701119877
No 6
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=2.59 E-value=2.9e+02 Score=12.21 Aligned_cols=10 Identities=40% Similarity=0.617 Sum_probs=6.5
Q ss_pred HHHHHHHHHH
Q ss_conf 9999976676
Q gi|254781132|r 17 DLVSAVSRDL 26 (31)
Q Consensus 17 dlvsavsrdl 26 (31)
||..||+|-+
T Consensus 34 dL~~Av~~v~ 43 (45)
T 3e21_A 34 DLVAAINGVI 43 (45)
T ss_dssp CHHHHHTTC-
T ss_pred HHHHHHHHHC
T ss_conf 6999998766
No 7
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=2.47 E-value=2.9e+02 Score=12.23 Aligned_cols=20 Identities=35% Similarity=0.559 Sum_probs=14.0
Q ss_pred CCCCCCCCCCCCHHHHHHHH
Q ss_conf 98884132111346899999
Q gi|254781132|r 1 MENPLWYSHEYDDEAKDLVS 20 (31)
Q Consensus 1 menplwysheyddeakdlvs 20 (31)
|+.||--.|.|+-.|.-++.
T Consensus 8 ~~~PLN~AH~~~RRAEr~l~ 27 (97)
T 2crb_A 8 MEGPLNLAHQQSRRADRLLA 27 (97)
T ss_dssp CTTHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH
T ss_conf 54624899999888999998
No 8
>1joy_A Protein (ENVZ_ecoli); histidine kinase, sensory transduction, osmolarity sensor protein, inner membrane, phosphorylation, transferase; NMR {Escherichia coli} SCOP: a.30.2.1
Probab=2.42 E-value=3.9e+02 Score=11.64 Aligned_cols=19 Identities=37% Similarity=0.466 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q ss_conf 1134689999997667653
Q gi|254781132|r 10 EYDDEAKDLVSAVSRDLIT 28 (31)
Q Consensus 10 eyddeakdlvsavsrdlit 28 (31)
+....-+.+++.+|.||-|
T Consensus 7 ~~~~~r~~f~a~iSHeLRT 25 (67)
T 1joy_A 7 QLADDRTLLMAGVSHDLRT 25 (67)
T ss_dssp SSSSSHHHHHTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCC
T ss_conf 9999999999875276256
No 9
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=2.37 E-value=4.2e+02 Score=11.48 Aligned_cols=20 Identities=20% Similarity=0.130 Sum_probs=0.0
Q ss_pred CHHHHHHH-----HHHHHHHHHCCC
Q ss_conf 34689999-----997667653169
Q gi|254781132|r 12 DDEAKDLV-----SAVSRDLITKDY 31 (31)
Q Consensus 12 ddeakdlv-----savsrdlitkdy 31 (31)
++||++|+ +|..||..|.|.
T Consensus 142 ~~eA~ela~~Ai~~A~~~dv~T~~~ 166 (174)
T 1g3k_A 142 ELSAHEIVEKSLRIAGDICVFTNTN 166 (174)
T ss_dssp CCCHHHHHHHHHHHHHHHCTTCCSC
T ss_pred CCCHHHHHHHHHHHHHHHCEECCCC
T ss_conf 9899999999999976016771996
No 10
>1aoy_A Arginine repressor; DNA-binding protein, expression regulation, DNA organization, winged helix; NMR {Escherichia coli K12} SCOP: a.4.5.3
Probab=2.31 E-value=4.3e+02 Score=11.44 Aligned_cols=7 Identities=71% Similarity=0.624 Sum_probs=0.0
Q ss_pred HHHHHHH
Q ss_conf 9976676
Q gi|254781132|r 20 SAVSRDL 26 (31)
Q Consensus 20 savsrdl 26 (31)
+.+||||
T Consensus 44 aTiSRDL 50 (78)
T 1aoy_A 44 SKVSRML 50 (78)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 8899999
Done!