HHsearch alignment for GI: 254781133 and conserved domain: TIGR03585
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=99.92 E-value=6e-24 Score=157.56 Aligned_cols=131 Identities=9% Similarity=0.031 Sum_probs=114.0
Q ss_pred CCCCEE-EECCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEEEEEEEECCCCCCCEEEECC--CCCCH
Q ss_conf 776205-736898799989999999997200114878549999825760767999999834678311368637--76603
Q gi|254781133|r 2 YNTIEI-TWGGNAKPRINQIIADFVAKRIKDCSSGWDRFVSMGILKSNFLVAGIIYHNYCPISRVIELSGASD--CKSWL 78 (159)
Q Consensus 2 ~n~~~~-~W~~~~~P~t~e~~~~wi~~~~~~~~~~~~~~~ai~i~~~g~lvG~v~l~~~~~~~~~~eig~~~~--~~~~~ 78 (159)
T Consensus 18 rNdpev~~~~~~~~~~s~ee~~~w~~~~~~~~~---~--~~~ii~~~~~~IG~i~l~~id~~~~~ae~gi~~~~~~~~G~ 92 (156)
T TIGR03585 18 RNHPDVRANMYSDHLIDWEEHLHFIEALKQDPN---R--RYWIVCQESRPIGVISFTDINLVHKSAFWGIYANPFCKPGV 92 (156)
T ss_pred HCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCC---C--EEEEEEECCCEEEEEEEEECCCCCCEEEEEEEECHHHCCCH
T ss_conf 589999975289887799999999999745997---3--89999979928999988740300398999998222102577
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHHHCCCEEEEEECCC----CCEEEEEEE
Q ss_conf 59999999998624865079999982642158999987495896676128----941007999
Q gi|254781133|r 79 SRSVLKEIYSYPWNQLCCQAVIHRIPDEDYPQHRMLTSLGGIRYRIPRLR----GRNAAENIY 137 (159)
Q Consensus 79 ~~ea~~~l~~~aF~~l~l~Ri~~~~~~~N~~S~rv~eklGF~~egv~R~~----G~~~d~~v~ 137 (159)
T Consensus 93 g~~~~~~~l~~aF~~l~l~rl~~~v~~~N~~si~l~ek~GF~~EG~lr~~~~~~g~~~D~i~M 155 (156)
T TIGR03585 93 GSVLEEAALEYAFEHLGLHKLSLEVLEFNNKALKLYEKFGFEREGVFRQGIFKEGEYYDVLLM 155 (156)
T ss_pred HHHHHHHHHHHHHHHCCEEEEEEEECCCCHHHHHHHHHCCCEEEEEEEEEEEECCEEEEEEEE
T ss_conf 999999999999875692699999625689999999978999999988249798999899997