HHsearch alignment for GI: 254781133 and conserved domain: TIGR03585

>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=99.92  E-value=6e-24  Score=157.56  Aligned_cols=131  Identities=9%  Similarity=0.031  Sum_probs=114.0

Q ss_pred             CCCCEE-EECCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEEEEEEEECCCCCCCEEEECC--CCCCH
Q ss_conf             776205-736898799989999999997200114878549999825760767999999834678311368637--76603
Q gi|254781133|r    2 YNTIEI-TWGGNAKPRINQIIADFVAKRIKDCSSGWDRFVSMGILKSNFLVAGIIYHNYCPISRVIELSGASD--CKSWL   78 (159)
Q Consensus         2 ~n~~~~-~W~~~~~P~t~e~~~~wi~~~~~~~~~~~~~~~ai~i~~~g~lvG~v~l~~~~~~~~~~eig~~~~--~~~~~   78 (159)
T Consensus        18 rNdpev~~~~~~~~~~s~ee~~~w~~~~~~~~~---~--~~~ii~~~~~~IG~i~l~~id~~~~~ae~gi~~~~~~~~G~   92 (156)
T TIGR03585        18 RNHPDVRANMYSDHLIDWEEHLHFIEALKQDPN---R--RYWIVCQESRPIGVISFTDINLVHKSAFWGIYANPFCKPGV   92 (156)
T ss_pred             HCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCC---C--EEEEEEECCCEEEEEEEEECCCCCCEEEEEEEECHHHCCCH
T ss_conf             589999975289887799999999999745997---3--89999979928999988740300398999998222102577


Q ss_pred             HHHHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHHHCCCEEEEEECCC----CCEEEEEEE
Q ss_conf             59999999998624865079999982642158999987495896676128----941007999
Q gi|254781133|r   79 SRSVLKEIYSYPWNQLCCQAVIHRIPDEDYPQHRMLTSLGGIRYRIPRLR----GRNAAENIY  137 (159)
Q Consensus        79 ~~ea~~~l~~~aF~~l~l~Ri~~~~~~~N~~S~rv~eklGF~~egv~R~~----G~~~d~~v~  137 (159)
T Consensus        93 g~~~~~~~l~~aF~~l~l~rl~~~v~~~N~~si~l~ek~GF~~EG~lr~~~~~~g~~~D~i~M  155 (156)
T TIGR03585        93 GSVLEEAALEYAFEHLGLHKLSLEVLEFNNKALKLYEKFGFEREGVFRQGIFKEGEYYDVLLM  155 (156)
T ss_pred             HHHHHHHHHHHHHHHCCEEEEEEEECCCCHHHHHHHHHCCCEEEEEEEEEEEECCEEEEEEEE
T ss_conf             999999999999875692699999625689999999978999999988249798999899997