Query gi|254781134|ref|YP_003065547.1| hypothetical protein CLIBASIA_05180 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 320 No_of_seqs 163 out of 290 Neff 6.6 Searched_HMMs 33803 Date Wed Jun 1 22:31:14 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781134.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >3hxj_A Pyrrolo-quinoline quin 66.7 7.4 0.00022 17.7 3.8 29 166-199 8-36 (40) 2 >3ei3_A DNA damage-binding pro 28.3 31 0.00093 14.1 1.8 15 71-85 26-40 (44) 3 >3hxj_A Pyrrolo-quinoline quin 23.4 28 0.00082 14.4 0.8 30 152-181 85-116 (127) 4 >2pbi_B Guanine nucleotide-bin 17.7 57 0.0017 12.7 1.5 22 162-183 29-50 (92) 5 >1blf_A Lactoferrin; transferr 13.8 63 0.0019 12.4 0.8 21 63-83 107-127 (162) 6 >2ns0_A Hypothetical protein; 13.5 66 0.002 12.3 0.8 27 29-57 54-80 (85) 7 >1h45_A Lactoferrin; metal tra 13.2 67 0.002 12.2 0.8 19 63-81 107-125 (162) 8 >2vz8_A Fatty acid synthase; t 12.5 66 0.002 12.3 0.6 22 138-159 92-113 (114) 9 >3fcs_A Integrin, alpha 2B; be 12.0 81 0.0024 11.8 3.3 23 18-40 27-54 (110) 10 >2d3i_A Ovotransferrin; alumin 11.4 83 0.0025 11.7 0.8 16 63-78 106-121 (159) No 1 >>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., structural genomics, PSI-2; 2.00A {Methanococcus maripaludis C7} (A:257-296) Probab=66.73 E-value=7.4 Score=17.74 Aligned_cols=29 Identities=17% Similarity=0.493 Sum_probs=20.3 Q ss_pred ECCEEEEECCCCEEEECCCCCCCCCCEEEEEEEE Q ss_conf 0442999405838997442567577507999982 Q gi|254781134|r 166 ANENLFFGDYEGTFWQGDISGSDNARPFIGIYLS 199 (320) Q Consensus 166 ~~~~lyfG~~dG~Vy~~e~G~sddG~~i~a~y~s 199 (320) .++.+|||..||++|--+.-++ ..+.|.+ T Consensus 8 ~dG~IyvGs~Dg~lYai~~~G~-----l~W~f~t 36 (40) T 3hxj_A 8 NTDTIYFGSYDGHLYAINPDGT-----EKWNFET 36 (40) T ss_dssp TTSCEEEECTTCEEEEECTTSC-----EEEEEEC T ss_pred CCCEEEEECCCCEEEEEECCCC-----EEEEEEC T ss_conf 6999999918998999989999-----9999979 No 2 >>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 2b5n_A (A:33-76) Probab=28.29 E-value=31 Score=14.13 Aligned_cols=15 Identities=27% Similarity=0.678 Sum_probs=10.9 Q ss_pred CEEEEECCCEEEEEE Q ss_conf 099992688065210 Q gi|254781134|r 71 DVWIATNNGLISMKN 85 (320) Q Consensus 71 Dl~fls~dGlr~ls~ 85 (320) +|-.++|+||||+-. T Consensus 26 Ei~lvtpeGL~p~~d 40 (44) T 3ei3_A 26 EIYVVTAEGLRPVKE 40 (44) T ss_dssp EEEEEETTEEEEEEE T ss_pred EEEEECCCCEEEEEE T ss_conf 999988995799999 No 3 >>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., structural genomics, PSI-2; 2.00A {Methanococcus maripaludis C7} (A:1-93,A:297-330) Probab=23.41 E-value=28 Score=14.44 Aligned_cols=30 Identities=20% Similarity=0.500 Sum_probs=17.8 Q ss_pred EEEEECCCE--EEEEEECCEEEEECCCCEEEE Q ss_conf 378635512--799820442999405838997 Q gi|254781134|r 152 WSSFHNWFT--QSYVVANENLFFGDYEGTFWQ 181 (320) Q Consensus 152 ws~~~g~~a--~~~~~~~~~lyfG~~dG~Vy~ 181 (320) |.-+.+|+- ......++++|||+.+|..|- T Consensus 85 ~~~Te~wrF~~~~~ID~~G~I~FGT~~G~~Y~ 116 (127) T 3hxj_A 85 PDGTEKWRFIATPVIDENGTIYFGTRNGKFYA 116 (127) T ss_dssp CCGGGGGGSCSCCEECTTCCEEEECTTSCEEE T ss_pred CCCCEEEEEEEEEEEECCCEEEEEECCCEEEE T ss_conf 45550332088408933999999979998999 No 4 >>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, beta propeller, signaling protein; 1.95A {Mus musculus} (B:44-63,B:283-354) Probab=17.65 E-value=57 Score=12.67 Aligned_cols=22 Identities=23% Similarity=0.217 Sum_probs=10.2 Q ss_pred EEEEECCEEEEECCCCEEEECC Q ss_conf 9982044299940583899744 Q gi|254781134|r 162 SYVVANENLFFGDYEGTFWQGD 183 (320) Q Consensus 162 ~~~~~~~~lyfG~~dG~Vy~~e 183 (320) +|..-...++-|..||.++-.| T Consensus 29 ~~sp~g~~lasg~~Dg~I~iWd 50 (92) T 2pbi_B 29 DFSLSGRLLFAGYNDYTINVWD 50 (92) T ss_dssp EECTTSSEEEEEETTSCEEEEE T ss_pred EECCCCCEEEEEECCCEEEEEE T ss_conf 9889999999997989799999 No 5 >>1blf_A Lactoferrin; transferrin, iron-binding protein, carbohydrate structure; HET: NAG BMA MAN; 2.80A {Bos taurus} (A:91-252) Probab=13.78 E-value=63 Score=12.38 Aligned_cols=21 Identities=10% Similarity=0.058 Sum_probs=12.1 Q ss_pred HHEEEECCCEEEEECCCEEEE Q ss_conf 113420780999926880652 Q gi|254781134|r 63 RAIVFVKNDVWIATNNGLISM 83 (320) Q Consensus 63 ~~i~~~GgDl~fls~dGlr~l 83 (320) ||+++-+||++|+..+-++.. T Consensus 107 rCL~eg~GDVAFv~~~~v~~~ 127 (162) T 1blf_A 107 KCLQDGAGDVAFVKETTVFEN 127 (162) T ss_dssp HHHHTTSCSEEEEETTHHHHH T ss_pred HHHHHCCCCEEEEECCCHHHC T ss_conf 999828961799732205432 No 6 >>2ns0_A Hypothetical protein; rhodococcus structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP} (A:) Probab=13.51 E-value=66 Score=12.27 Aligned_cols=27 Identities=26% Similarity=0.167 Sum_probs=20.1 Q ss_pred ECCCCEEEEEECCCCCCCCEEEEEEEEEC Q ss_conf 63881899960588875624896588704 Q gi|254781134|r 29 STLGEVAVYGGDNPDDSSSFSLKAIYHIG 57 (320) Q Consensus 29 ~~~g~v~v~~g~~p~~~~~~~l~~~~~~~ 57 (320) -.+|+|.|+|+--|.++.+|. |+|++. T Consensus 54 a~~G~i~I~qkG~pVdp~~~r--GpiRir 80 (85) T 2ns0_A 54 ADAGEVEVTQKGAVVDPRSAR--GPIRIR 80 (85) T ss_dssp HHTTSEEEEETTEECCTTTCC--SCCEEE T ss_pred HHCCCEEEEECCEECCCCCCC--CCEEEE T ss_conf 877968997799874711278--755840 No 7 >>1h45_A Lactoferrin; metal transport, iron transport, metal binding; 1.95A {Homo sapiens} (A:92-253) Probab=13.23 E-value=67 Score=12.24 Aligned_cols=19 Identities=11% Similarity=0.060 Sum_probs=10.7 Q ss_pred HHEEEECCCEEEEECCCEE Q ss_conf 1134207809999268806 Q gi|254781134|r 63 RAIVFVKNDVWIATNNGLI 81 (320) Q Consensus 63 ~~i~~~GgDl~fls~dGlr 81 (320) ||+++-+||++|+..+-+. T Consensus 107 rCL~eg~GDVAFv~~~~v~ 125 (162) T 1h45_A 107 KCLRDGAGDVAFIGESTVF 125 (162) T ss_dssp HHHHTTSCSEEEEETTHHH T ss_pred HHHHCCCCCEEEECCCCHH T ss_conf 6776199207984165266 No 8 >>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* (A:1121-1124,A:1410-1519) Probab=12.54 E-value=66 Score=12.28 Aligned_cols=22 Identities=27% Similarity=0.596 Sum_probs=17.2 Q ss_pred CEEEEEEECCCCCEEEEEECCC Q ss_conf 1014676212353037863551 Q gi|254781134|r 138 SDKTFVMNVAHNNRWSSFHNWF 159 (320) Q Consensus 138 ~~~~~v~~~~~~gaws~~~g~~ 159 (320) .....++|..+.|+|..|+-++ T Consensus 92 l~kdL~~NVyrnG~WGSyRHl~ 113 (114) T 2vz8_A 92 LQGDLVMNVYRDGAWGAFRHFP 113 (114) T ss_dssp HHSCCSEEEEETTEEEEECCEE T ss_pred HCCCCEEEEECCCCCCCEECCC T ss_conf 5488524553044211100254 No 9 >>3fcs_A Integrin, alpha 2B; beta propeller, rossmann fold, EGF domain, alternative splicing, cell adhesion, disease mutation, glycoprotein; HET: NAG MAN; 2.55A {Homo sapiens} (A:1-17,A:359-451) Probab=12.04 E-value=81 Score=11.77 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=13.6 Q ss_pred CCCCCEEEEEEE-----CCCCEEEEEEC Q ss_conf 578530799996-----38818999605 Q gi|254781134|r 18 GDGLSTLCVFLS-----TLGEVAVYGGD 40 (320) Q Consensus 18 g~g~~~~~v~i~-----~~g~v~v~~g~ 40 (320) |+|+.|++|--. .+|.|.||.|. T Consensus 27 gDG~~DiaVGAP~~g~~~~G~VyIy~G~ 54 (110) T 3fcs_A 27 RDGYNDIAVAAPYGGPSGRGQVLVFLGQ 54 (110) T ss_dssp CSSSCEEEEEETTCSTTSSCEEEEECEE T ss_pred CCCCCCEEECCCCCCCCCCCEEEEECCC T ss_conf 8876534670676777886379999078 No 10 >>2d3i_A Ovotransferrin; aluminum, metal-binding, transport, metal transport; 2.15A {Gallus gallus} (A:91-249) Probab=11.37 E-value=83 Score=11.70 Aligned_cols=16 Identities=19% Similarity=0.115 Sum_probs=0.0 Q ss_pred HHEEEECCCEEEEECC Q ss_conf 1134207809999268 Q gi|254781134|r 63 RAIVFVKNDVWIATNN 78 (320) Q Consensus 63 ~~i~~~GgDl~fls~d 78 (320) ||+++=+||++|+..+ T Consensus 106 rCL~eg~GDVAFv~~~ 121 (159) T 2d3i_A 106 HCLKDGKGDVAFVKHT 121 (159) T ss_dssp HHHHTTSCSEEEEETT T ss_pred HHHHCCCCCEEEEECC T ss_conf 8875489846999652 Done!