Query gi|254781134|ref|YP_003065547.1| hypothetical protein CLIBASIA_05180 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 320 No_of_seqs 163 out of 290 Neff 6.6 Searched_HMMs 13730 Date Wed Jun 1 11:34:59 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781134.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1daaa_ e.17.1.1 (A:) D-aminoa 12.9 31 0.0023 11.9 2.5 35 168-205 165-199 (277) 2 d1uj4a1 c.124.1.4 (A:3-131,A:2 11.4 35 0.0025 11.6 1.0 30 57-86 66-95 (151) 3 d1gv8a_ c.94.1.2 (A:) Ovotrans 8.7 44 0.0032 11.1 0.8 10 65-74 108-117 (159) 4 d2ns0a1 a.4.5.76 (A:1-85) Hypo 7.8 48 0.0035 10.8 0.8 26 30-57 55-80 (85) 5 d1udxa1 b.117.1.1 (A:1-156) Ob 6.4 57 0.0041 10.4 1.4 50 35-86 9-58 (156) 6 d1so9a_ b.146.1.1 (A:) Cytochr 6.0 47 0.0035 10.9 -0.3 46 259-304 59-104 (131) 7 d1lura_ b.30.5.4 (A:) Aldose 1 5.6 63 0.0046 10.1 1.8 90 143-236 63-152 (329) 8 d1l4db_ d.15.5.1 (B:) Streptok 5.3 66 0.0048 10.0 1.6 17 163-179 84-100 (122) 9 d1oh1a_ b.61.2.2 (A:) Staphost 5.3 66 0.0048 10.0 0.2 28 124-152 4-31 (109) 10 d2fug71 d.82.2.2 (7:3-129) NAD 4.9 62 0.0045 10.2 -0.3 23 178-200 38-72 (127) No 1 >d1daaa_ e.17.1.1 (A:) D-aminoacid aminotransferase {Bacillus sp., strain YM-1 [TaxId: 1409]} Probab=12.90 E-value=31 Score=11.93 Aligned_cols=35 Identities=14% Similarity=-0.053 Sum_probs=15.1 Q ss_pred CEEEEECCCCEEEECCCCCCCCCCEEEEEEEECCCCCC Q ss_conf 42999405838997442567577507999982576778 Q gi|254781134|r 168 ENLFFGDYEGTFWQGDISGSDNARPFIGIYLSPFHAID 205 (320) Q Consensus 168 ~~lyfG~~dG~Vy~~e~G~sddG~~i~a~y~sp~~~fg 205 (320) +.+++ +.+|+|-..-.+|-|- -......||...-+ T Consensus 165 d~~l~-~~~g~v~E~~~sNvf~--vk~~~~~tPp~~~g 199 (277) T d1daaa_ 165 YEAIL-HRNNTVTEGSSSNVFG--IKDGILYTHPANNM 199 (277) T ss_dssp SEEEE-EETTEEEEETTBEEEE--EETTEEEECCSSTT T ss_pred CCEEE-ECCCCCEECCCCEEEE--EECCEEEECCCCCC T ss_conf 40254-0488420036415999--98999994677445 No 2 >d1uj4a1 c.124.1.4 (A:3-131,A:206-227) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Thermus thermophilus [TaxId: 274]} Probab=11.36 E-value=35 Score=11.64 Aligned_cols=30 Identities=7% Similarity=-0.080 Sum_probs=23.7 Q ss_pred CCCCCCHHEEEECCCEEEEECCCEEEEEEE Q ss_conf 461370113420780999926880652101 Q gi|254781134|r 57 GRPLGKRAIVFVKNDVWIATNNGLISMKNI 86 (320) Q Consensus 57 ~~~i~~~~i~~~GgDl~fls~dGlr~ls~t 86 (320) .|+...+.+.++.-|+.|++.||+.+=.+. T Consensus 66 ~g~~~~~~l~~~~~D~aF~g~~gvd~~~g~ 95 (151) T d1uj4a1 66 REGIPLVDLPPEGVDLAIDGADEIAPGLAL 95 (151) T ss_dssp HTTCCBCCCCTTCEEEEEECCSEEEGGGEE T ss_pred CCCCCCCCCCCCEECEEEECCCCCCCCCCC T ss_conf 277422122343005899716612577671 No 3 >d1gv8a_ c.94.1.2 (A:) Ovotransferrin {Duck (Anas platyrhynchos) [TaxId: 8839]} Probab=8.65 E-value=44 Score=11.05 Aligned_cols=10 Identities=30% Similarity=0.082 Sum_probs=3.2 Q ss_pred EEEECCCEEE Q ss_conf 3420780999 Q gi|254781134|r 65 IVFVKNDVWI 74 (320) Q Consensus 65 i~~~GgDl~f 74 (320) +++=+||++| T Consensus 108 L~eg~GDVAF 117 (159) T d1gv8a_ 108 LKDGKGDVAF 117 (159) T ss_dssp HHTTSCSEEE T ss_pred HHHCCCCEEE T ss_conf 5427963699 No 4 >d2ns0a1 a.4.5.76 (A:1-85) Hypothetical protein RHA1_ro06458 {Rhodococcus sp. RHA1 [TaxId: 101510]} Probab=7.76 E-value=48 Score=10.82 Aligned_cols=26 Identities=27% Similarity=0.197 Sum_probs=17.0 Q ss_pred CCCCEEEEEECCCCCCCCEEEEEEEEEC Q ss_conf 3881899960588875624896588704 Q gi|254781134|r 30 TLGEVAVYGGDNPDDSSSFSLKAIYHIG 57 (320) Q Consensus 30 ~~g~v~v~~g~~p~~~~~~~l~~~~~~~ 57 (320) .+|+|.|+|+-.|.++++| .|.+++. T Consensus 55 ~~G~i~I~qkG~~VDp~~~--rGpiRlr 80 (85) T d2ns0a1 55 DAGEVEVTQKGAVVDPRSA--RGPIRIR 80 (85) T ss_dssp HTTSEEEEETTEECCTTTC--CSCCEEE T ss_pred HCCCEEEEECCEECCCCCC--CCCEEEE T ss_conf 7796899779964681217--8754840 No 5 >d1udxa1 b.117.1.1 (A:1-156) Obg GTP-binding protein N-terminal domain {Thermus thermophilus [TaxId: 274]} Probab=6.40 E-value=57 Score=10.42 Aligned_cols=50 Identities=20% Similarity=0.280 Sum_probs=25.3 Q ss_pred EEEEECCCCCCCCEEEEEEEEECCCCCCHHEEEECCCEEEEECCCEEEEEEE Q ss_conf 9996058887562489658870461370113420780999926880652101 Q gi|254781134|r 35 AVYGGDNPDDSSSFSLKAIYHIGRPLGKRAIVFVKNDVWIATNNGLISMKNI 86 (320) Q Consensus 35 ~v~~g~~p~~~~~~~l~~~~~~~~~i~~~~i~~~GgDl~fls~dGlr~ls~t 86 (320) .|-.|.-.+-...|.-..-...++|=+.+- --|||++|.++..+.+|+.. T Consensus 9 ~v~~G~GG~G~~sf~rek~~~~ggp~GG~G--G~GG~Vi~~ad~~l~tL~~~ 58 (156) T d1udxa1 9 TVAAGRGGDGAVSFRREKFVPKGGPDGGDG--GRGGSVYLRARGSVDSLSRL 58 (156) T ss_dssp EEECCCCCCCCCCBCCBTTBSCCCBCCCCC--CCCCCEEEEECTTCCSSTTS T ss_pred EEEECCCCCCCEEEECCCCCCCCCCCCCCC--CCCCEEEEEECCHHHHHHHH T ss_conf 999638979753141465466789988888--86631999977326467763 No 6 >d1so9a_ b.146.1.1 (A:) Cytochrome C oxidase assembly protein CtaG {Rhizobium meliloti (Sinorhizobium meliloti) [TaxId: 382]} Probab=6.04 E-value=47 Score=10.86 Aligned_cols=46 Identities=11% Similarity=0.203 Sum_probs=17.5 Q ss_pred ECCEEECCEEECCCCCCCCCCCEEEEEEEEEEEEEEEEEEEEECCC Q ss_conf 4415523177247310034310123443436569999999993188 Q gi|254781134|r 259 WDNSLWDEVKWTDNLFVTKKKLFQFCQNVVAYGNCLAVGCVIVSSG 304 (320) Q Consensus 259 wg~a~w~~a~~g~~~~~~~~~~~~~~q~v~GsG~~vav~i~~~s~g 304 (320) -|.|+|+.+.--++.+..+-.=+=|.++.-..|..+-+-++..++- T Consensus 59 ~g~A~~nV~P~~a~~Yf~KieCFCF~~Q~L~pgE~~~mpv~F~IDP 104 (131) T d1so9a_ 59 TGQATFNVTPMAAGAYFNKVQCFCFTETTLEPGEEMEMPVVFFVDP 104 (131) T ss_dssp ECCCEEEECSSSCSTTBTTSCCSSCSCCEECTTCEEEEEECCCBCG T ss_pred EEEEEEEECHHHHHHHEECCCEEEEEEEEECCCCEEEEEEEEEECC T ss_conf 9999800587997644054728877516978998898749999998 No 7 >d1lura_ b.30.5.4 (A:) Aldose 1-epimerase homologue {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Probab=5.60 E-value=63 Score=10.15 Aligned_cols=90 Identities=9% Similarity=-0.040 Sum_probs=0.0 Q ss_pred EEECCCCCEEEEEECCCEEEEEEECCEEEEECCCCEEEECCCCCCCCCCEEEEEEEECCCCCCCCCCEEEEEEEEEEEEE Q ss_conf 76212353037863551279982044299940583899744256757750799998257677884112699999998998 Q gi|254781134|r 143 VMNVAHNNRWSSFHNWFTQSYVVANENLFFGDYEGTFWQGDISGSDNARPFIGIYLSPFHAIDPRLGFQRRACVAHLSLQ 222 (320) Q Consensus 143 v~~~~~~gaws~~~g~~a~~~~~~~~~lyfG~~dG~Vy~~e~G~sddG~~i~a~y~sp~~~fgdps~~rK~~~~~~~~~~ 222 (320) +.|-++.+.| ++-|-.-.--.......+||+..|+-.+...--..+...+...+.++..+.|=| + ...-.++-.+. T Consensus 63 ~aNRI~~g~f-~~~G~~y~L~~N~~~n~lHGg~~g~~~~~w~v~~~~~~~v~~~~~~~~~~~GyP-g--~l~~~vtY~L~ 138 (329) T d1lura_ 63 VANRIKNSTL-HFDGKQYTMTPNNGPHYLHGGPNGLGYRKWEVVRHAPESVSFSVRANEQDDGLP-G--DAKIDVTYTVN 138 (329) T ss_dssp BCSEEGGGEE-EETTEEEECCCSBTTBEETTCTTSGGGSBCEEEEEETTEEEEEEEEEHHHHSSS-S--EEEEEEEEEEC T ss_pred CCCEEECCEE-EECCEEEEECCCCCCCCCCCCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCCC-C--CEEEEEEEEEC T ss_conf 0770648869-899999882367788634667798436777788605760699998248766765-4--26899999982 Q ss_pred ECCCCCEEEEEEEE Q ss_conf 17862147999983 Q gi|254781134|r 223 AYQRPYLKLFARAN 236 (320) Q Consensus 223 ~~g~~~~~l~~~yD 236 (320) .++...+.+...-| T Consensus 139 ~~~~l~i~~~a~~d 152 (329) T d1lura_ 139 DRNQLIIEHHATCD 152 (329) T ss_dssp TTSEEEEEEEEECS T ss_pred CCCEEEEEEEEEEC T ss_conf 48789999788606 No 8 >d1l4db_ d.15.5.1 (B:) Streptokinase {Streptococcus equisimilis [TaxId: 119602]} Probab=5.30 E-value=66 Score=10.04 Aligned_cols=17 Identities=24% Similarity=0.540 Sum_probs=0.0 Q ss_pred EEEECCEEEEECCCCEE Q ss_conf 98204429994058389 Q gi|254781134|r 163 YVVANENLFFGDYEGTF 179 (320) Q Consensus 163 ~~~~~~~lyfG~~dG~V 179 (320) .+..++++||++.||-| T Consensus 84 itdr~~~lyfA~~d~SV 100 (122) T d1l4db_ 84 ITDRNGKVYFADKDGSV 100 (122) T ss_dssp EEETTCCEECCCTTSEE T ss_pred EECCCCCEEEECCCCCE T ss_conf 23156758986588856 No 9 >d1oh1a_ b.61.2.2 (A:) Staphostatin A (SAV1910, SA1726) {Staphylococcus aureus [TaxId: 1280]} Probab=5.29 E-value=66 Score=10.03 Aligned_cols=28 Identities=21% Similarity=0.411 Sum_probs=0.0 Q ss_pred CCEEEEEECCCCCCCEEEEEEECCCCCEE Q ss_conf 82899982688763101467621235303 Q gi|254781134|r 124 RNMLLISCPKNSLLSDKTFVMNVAHNNRW 152 (320) Q Consensus 124 ~~~~lf~~~~~~~~~~~~~v~~~~~~gaw 152 (320) +||-||+..+.......++.++++ .|.| T Consensus 4 ~~~~l~~i~~~~~~~~~kywlhil-eG~W 31 (109) T d1oh1a_ 4 EQFELFSIDKFKCNSEAKYYLNII-EGEW 31 (109) T ss_dssp CSCEEEEECCCCCSSCCHHHHHHT-BEEE T ss_pred CEEEEEEECCCCCCHHHHHHHHHH-HCEE T ss_conf 207999631566460466444244-0314 No 10 >d2fug71 d.82.2.2 (7:3-129) NADH-quinone oxidoreductase subunit 15, Nqo15 {Thermus thermophilus [TaxId: 274]} Probab=4.95 E-value=62 Score=10.20 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=0.0 Q ss_pred EEEECC-----------CCCCC-CCCEEEEEEEEC Q ss_conf 899744-----------25675-775079999825 Q gi|254781134|r 178 TFWQGD-----------ISGSD-NARPFIGIYLSP 200 (320) Q Consensus 178 ~Vy~~e-----------~G~sd-dG~~i~a~y~sp 200 (320) |+|+|| ..-++ +|+|+...+.|| T Consensus 38 yIYRMERpYdLPTTvMs~sls~~~G~p~l~a~vSP 72 (127) T d2fug71 38 FIYRMERPYDLPTTIMTASLSDGLGEPFLLADVSP 72 (127) T ss_dssp HHTCCSSCCCCSCSEEEEEEECSSCCEEEEEEECC T ss_pred HHHHCCCCCCCCHHHEEEEECCCCCCEEEEEECCC T ss_conf 88850665568700157762168998778873385 Done!