RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254781134|ref|YP_003065547.1| hypothetical protein CLIBASIA_05180 [Candidatus Liberibacter asiaticus str. psy62] (320 letters) >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 40.8 bits (94), Expect = 4e-04 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 14/41 (34%) Query: 211 QRRACVAHLS-LQAYQRPYLKLFARANYDHSYPEFS-KETI 249 +++A L LQA LKL+A D S P + K T+ Sbjct: 18 EKQA----LKKLQAS----LKLYA----DDSAPALAIKATM 46 Score = 30.4 bits (67), Expect = 0.60 Identities = 8/27 (29%), Positives = 14/27 (51%), Gaps = 6/27 (22%) Query: 28 LSTL-GEVAVYGGDNPDDSS-SFSLKA 52 L L + +Y DDS+ + ++KA Sbjct: 22 LKKLQASLKLYA----DDSAPALAIKA 44 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 37.2 bits (86), Expect = 0.005 Identities = 56/321 (17%), Positives = 94/321 (29%), Gaps = 128/321 (39%) Query: 34 VAVYGGD-NPDDSSSFS-LKAIYHIGRPLGKRAIVFVKNDVWIATNNGLISMKNILLQEE 91 VA++GG N DD F L+ +Y L I F L E Sbjct: 157 VAIFGGQGNTDDY--FEELRDLYQTYHVLVGDLIKFSAE----------------TLSE- 197 Query: 92 KTNLPLSWPIQEQWEQAIMVAPTGWSMILW----EKR---NMLL---ISCPKNSLLSDKT 141 L A V G +++ W + LL ISCP ++ Sbjct: 198 -----LI----RTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAH 248 Query: 142 F-----VMN-----VAHNNRWSSFHNWFTQSYVVANENLFFGDYEGTFWQGDISGSD--- 188 + ++ + + ++ H +Q V A I+ +D Sbjct: 249 YVVTAKLLGFTPGELRSYLKGATGH---SQGLVTA-----------VA----IAETDSWE 290 Query: 189 ----NARP------FIGI-----YLSPFHAIDPRLGFQRRACVAH--------LSLQAYQ 225 + R FIG+ Y P ++ P + + + LS+ Sbjct: 291 SFFVSVRKAITVLFFIGVRCYEAY--PNTSLPPSI---LEDSLENNEGVPSPMLSISNLT 345 Query: 226 RPYL-KLFARANYDHSYPEFSKETIS--NNPMDN-----------GIWDNSLWDEVKWTD 271 + + + N P + IS N N G+ N + K Sbjct: 346 QEQVQDYVNKTN--SHLPAGKQVEISLVNGA-KNLVVSGPPQSLYGL--NLTLRKAKAPS 400 Query: 272 NL------FVTKKKL-F--QF 283 L F +++KL F +F Sbjct: 401 GLDQSRIPF-SERKLKFSNRF 420 Score = 34.1 bits (78), Expect = 0.037 Identities = 49/236 (20%), Positives = 73/236 (30%), Gaps = 106/236 (44%) Query: 5 GSLPAGFSWSTESGDGLSTLCVFLSTLGEVAVYGGDNPDDSSSF---SLKAIYHIGRPLG 61 G L + +T GL T VA+ D+ + SF KAI Sbjct: 261 GELRSYLKGATGHSQGLVT---------AVAIAETDSWE---SFFVSVRKAI-------- 300 Query: 62 KRAIVFVKNDVWIATNNGLISMKNILLQEE--KTNLPLSWPIQEQWEQAIMVAPTGWSMI 119 ++F +I G+ E T+LP S +++ E V P+ Sbjct: 301 --TVLF-----FI----GVRC------YEAYPNTSLPPS-ILEDSLENNEGV-PS----- 336 Query: 120 LWEKRNMLLIS-CPKNSLLS--DKTFVMNVAH---NNRWS-SFHNWFTQSYVVA------ 166 ML IS + + +KT N +H + S N ++ VV+ Sbjct: 337 -----PMLSISNLTQEQVQDYVNKT---N-SHLPAGKQVEISLVNG-AKNLVVSGPPQSL 386 Query: 167 ---NENLFFGDYEGTFWQGDI---SGSDNAR-PF-------------IGIYLSPFH 202 N L SG D +R PF + SPFH Sbjct: 387 YGLNLTL-----------RKAKAPSGLDQSRIPFSERKLKFSNRFLPVA---SPFH 428 Score = 34.1 bits (78), Expect = 0.038 Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 36/123 (29%) Query: 1 MQAGGSLPAGFSWSTES-GD--GLSTLCVFLS--TLGEVAVYGGDN-----PDD------ 44 +++ G +PA +++ S G+ L++L +S +L EV Y G P D Sbjct: 1747 LKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSN 1806 Query: 45 -----------SSSFSLKAIYHIGRPLGKRA-----IV--FVKNDVWIATNN--GLISMK 84 ++SFS +A+ ++ +GKR IV V+N ++A + L ++ Sbjct: 1807 YGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVT 1866 Query: 85 NIL 87 N+L Sbjct: 1867 NVL 1869 Score = 26.4 bits (58), Expect = 8.4 Identities = 19/87 (21%), Positives = 29/87 (33%), Gaps = 25/87 (28%) Query: 159 FTQSYVVANENLFFGDYEGT----FWQGDISGSDNARPFIGIYLSPFHAIDPRLGFQRRA 214 F + E F D E T + F+G Y+S ++P Q Sbjct: 37 FNKILPEPTEG-FAADDEPTTPAELV---------GK-FLG-YVS--SLVEPSKVGQFDQ 82 Query: 215 CVAHLSLQAYQRPYLKLFARANYD-HS 240 + L L ++ YL N D H+ Sbjct: 83 VLN-LCLTEFENCYL----EGN-DIHA 103 >3lu1_A WBGU; rossman fold, epimerase, lipopolysaccharide, glycan, NADH, U glcnac, isomerase; HET: NAD UD2; 2.50A {Plesiomonas shigelloides} Length = 364 Score = 26.5 bits (58), Expect = 8.2 Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 1/51 (1%) Query: 22 STLCVFLSTLGEVAVYGGDNPDDSSSFSLKAIYHIGRPLGKRAIVFVKNDV 72 S L L L +V V G DN ++L + + F++ D+ Sbjct: 52 SNLLEKLLKLNQV-VIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDI 101 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.320 0.135 0.432 Gapped Lambda K H 0.267 0.0564 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 2,842,841 Number of extensions: 127373 Number of successful extensions: 331 Number of sequences better than 10.0: 1 Number of HSP's gapped: 330 Number of HSP's successfully gapped: 12 Length of query: 320 Length of database: 5,693,230 Length adjustment: 92 Effective length of query: 228 Effective length of database: 3,462,782 Effective search space: 789514296 Effective search space used: 789514296 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 57 (26.1 bits)