RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781134|ref|YP_003065547.1| hypothetical protein
CLIBASIA_05180 [Candidatus Liberibacter asiaticus str. psy62]
         (320 letters)



>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 40.8 bits (94), Expect = 4e-04
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 14/41 (34%)

Query: 211 QRRACVAHLS-LQAYQRPYLKLFARANYDHSYPEFS-KETI 249
           +++A    L  LQA     LKL+A    D S P  + K T+
Sbjct: 18  EKQA----LKKLQAS----LKLYA----DDSAPALAIKATM 46



 Score = 30.4 bits (67), Expect = 0.60
 Identities = 8/27 (29%), Positives = 14/27 (51%), Gaps = 6/27 (22%)

Query: 28 LSTL-GEVAVYGGDNPDDSS-SFSLKA 52
          L  L   + +Y     DDS+ + ++KA
Sbjct: 22 LKKLQASLKLYA----DDSAPALAIKA 44


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 37.2 bits (86), Expect = 0.005
 Identities = 56/321 (17%), Positives = 94/321 (29%), Gaps = 128/321 (39%)

Query: 34  VAVYGGD-NPDDSSSFS-LKAIYHIGRPLGKRAIVFVKNDVWIATNNGLISMKNILLQEE 91
           VA++GG  N DD   F  L+ +Y     L    I F                    L E 
Sbjct: 157 VAIFGGQGNTDDY--FEELRDLYQTYHVLVGDLIKFSAE----------------TLSE- 197

Query: 92  KTNLPLSWPIQEQWEQAIMVAPTGWSMILW----EKR---NMLL---ISCPKNSLLSDKT 141
                L          A  V   G +++ W          + LL   ISCP   ++    
Sbjct: 198 -----LI----RTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAH 248

Query: 142 F-----VMN-----VAHNNRWSSFHNWFTQSYVVANENLFFGDYEGTFWQGDISGSD--- 188
           +     ++      +    + ++ H   +Q  V A                 I+ +D   
Sbjct: 249 YVVTAKLLGFTPGELRSYLKGATGH---SQGLVTA-----------VA----IAETDSWE 290

Query: 189 ----NARP------FIGI-----YLSPFHAIDPRLGFQRRACVAH--------LSLQAYQ 225
               + R       FIG+     Y  P  ++ P +       + +        LS+    
Sbjct: 291 SFFVSVRKAITVLFFIGVRCYEAY--PNTSLPPSI---LEDSLENNEGVPSPMLSISNLT 345

Query: 226 RPYL-KLFARANYDHSYPEFSKETIS--NNPMDN-----------GIWDNSLWDEVKWTD 271
           +  +     + N     P   +  IS  N    N           G+  N    + K   
Sbjct: 346 QEQVQDYVNKTN--SHLPAGKQVEISLVNGA-KNLVVSGPPQSLYGL--NLTLRKAKAPS 400

Query: 272 NL------FVTKKKL-F--QF 283
            L      F +++KL F  +F
Sbjct: 401 GLDQSRIPF-SERKLKFSNRF 420



 Score = 34.1 bits (78), Expect = 0.037
 Identities = 49/236 (20%), Positives = 73/236 (30%), Gaps = 106/236 (44%)

Query: 5   GSLPAGFSWSTESGDGLSTLCVFLSTLGEVAVYGGDNPDDSSSF---SLKAIYHIGRPLG 61
           G L +    +T    GL T          VA+   D+ +   SF     KAI        
Sbjct: 261 GELRSYLKGATGHSQGLVT---------AVAIAETDSWE---SFFVSVRKAI-------- 300

Query: 62  KRAIVFVKNDVWIATNNGLISMKNILLQEE--KTNLPLSWPIQEQWEQAIMVAPTGWSMI 119
              ++F     +I    G+         E    T+LP S  +++  E    V P+     
Sbjct: 301 --TVLF-----FI----GVRC------YEAYPNTSLPPS-ILEDSLENNEGV-PS----- 336

Query: 120 LWEKRNMLLIS-CPKNSLLS--DKTFVMNVAH---NNRWS-SFHNWFTQSYVVA------ 166
                 ML IS   +  +    +KT   N +H     +   S  N   ++ VV+      
Sbjct: 337 -----PMLSISNLTQEQVQDYVNKT---N-SHLPAGKQVEISLVNG-AKNLVVSGPPQSL 386

Query: 167 ---NENLFFGDYEGTFWQGDI---SGSDNAR-PF-------------IGIYLSPFH 202
              N  L                 SG D +R PF             +    SPFH
Sbjct: 387 YGLNLTL-----------RKAKAPSGLDQSRIPFSERKLKFSNRFLPVA---SPFH 428



 Score = 34.1 bits (78), Expect = 0.038
 Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 36/123 (29%)

Query: 1    MQAGGSLPAGFSWSTES-GD--GLSTLCVFLS--TLGEVAVYGGDN-----PDD------ 44
            +++ G +PA  +++  S G+   L++L   +S  +L EV  Y G       P D      
Sbjct: 1747 LKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSN 1806

Query: 45   -----------SSSFSLKAIYHIGRPLGKRA-----IV--FVKNDVWIATNN--GLISMK 84
                       ++SFS +A+ ++   +GKR      IV   V+N  ++A  +   L ++ 
Sbjct: 1807 YGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVT 1866

Query: 85   NIL 87
            N+L
Sbjct: 1867 NVL 1869



 Score = 26.4 bits (58), Expect = 8.4
 Identities = 19/87 (21%), Positives = 29/87 (33%), Gaps = 25/87 (28%)

Query: 159 FTQSYVVANENLFFGDYEGT----FWQGDISGSDNARPFIGIYLSPFHAIDPRLGFQRRA 214
           F +      E  F  D E T                + F+G Y+S    ++P    Q   
Sbjct: 37  FNKILPEPTEG-FAADDEPTTPAELV---------GK-FLG-YVS--SLVEPSKVGQFDQ 82

Query: 215 CVAHLSLQAYQRPYLKLFARANYD-HS 240
            +  L L  ++  YL      N D H+
Sbjct: 83  VLN-LCLTEFENCYL----EGN-DIHA 103


>3lu1_A WBGU; rossman fold, epimerase, lipopolysaccharide, glycan, NADH, U
           glcnac, isomerase; HET: NAD UD2; 2.50A {Plesiomonas
           shigelloides}
          Length = 364

 Score = 26.5 bits (58), Expect = 8.2
 Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 1/51 (1%)

Query: 22  STLCVFLSTLGEVAVYGGDNPDDSSSFSLKAIYHIGRPLGKRAIVFVKNDV 72
           S L   L  L +V V G DN      ++L  +  +          F++ D+
Sbjct: 52  SNLLEKLLKLNQV-VIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDI 101


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.320    0.135    0.432 

Gapped
Lambda     K      H
   0.267   0.0564    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,842,841
Number of extensions: 127373
Number of successful extensions: 331
Number of sequences better than 10.0: 1
Number of HSP's gapped: 330
Number of HSP's successfully gapped: 12
Length of query: 320
Length of database: 5,693,230
Length adjustment: 92
Effective length of query: 228
Effective length of database: 3,462,782
Effective search space: 789514296
Effective search space used: 789514296
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.1 bits)