Query gi|254781135|ref|YP_003065548.1| hypothetical protein CLIBASIA_05185 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 83 No_of_seqs 19 out of 21 Neff 3.1 Searched_HMMs 23785 Date Wed Jun 1 01:48:05 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781135.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3oug_A Aspartate 1-decarboxyla 23.9 34 0.0014 15.3 2.1 32 2-33 54-85 (114) 2 1pqh_A Aspartate 1-decarboxyla 22.0 35 0.0015 15.2 1.8 33 2-34 68-100 (143) 3 1vc3_B L-aspartate-alpha-decar 16.2 38 0.0016 15.0 0.9 32 2-33 27-58 (96) 4 2c45_A Aspartate 1-decarboxyla 14.6 56 0.0024 14.1 1.5 33 2-34 51-83 (139) 5 2wj9_A ARDB, intergenic-region 12.5 77 0.0032 13.3 2.1 40 2-42 89-131 (181) 6 1uhe_A Aspartate 1-decarboxyla 12.2 56 0.0024 14.1 0.9 31 2-34 26-57 (97) 7 3l2f_A Glycocyamine kinase bet 10.6 89 0.0038 13.0 2.6 22 10-31 228-249 (390) 8 3n5b_B ASR0485 protein; PII, P 10.1 72 0.003 13.5 0.9 36 8-71 29-64 (112) 9 1m15_A Arginine kinase, AK; cr 9.6 97 0.0041 12.8 2.6 21 11-31 211-231 (357) 10 3jpz_A Lombricine kinase; mixe 9.5 98 0.0041 12.8 2.7 21 11-31 205-225 (366) No 1 >3oug_A Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta barrel; HET: MSE; 1.55A {Francisella tularensis subsp} Probab=23.88 E-value=34 Score=15.27 Aligned_cols=32 Identities=25% Similarity=0.268 Sum_probs=27.1 Q ss_pred CCCEEEEEEEECCCCEEEEEECCCCCCEEECC Q ss_conf 77708899972799609999518785225648 Q gi|254781135|r 2 KSGEWVTFQYTTPDKTFLIALNGQDERQIYNG 33 (83) Q Consensus 2 s~g~W~~vq~tT~Gg~fL~~~NG~D~~~~ynG 33 (83) .|.||+..-+.-+.||=-+++||+-|++.--| T Consensus 54 NG~Rf~TYvI~g~~gSg~I~lNGaAArl~~~G 85 (114) T 3oug_A 54 NGERLETYVIKGEPNSKTIALNGPAARRCEIG 85 (114) T ss_dssp TCCEEEEEEEEECTTSCCEEEEGGGGGGCCTT T ss_pred CCCEEEEEEEECCCCCCEEEECCHHHHCCCCC T ss_conf 99389989997479975686276786206999 No 2 >1pqh_A Aspartate 1-decarboxylase; pyruvoyl dependent decarboxylase, protein SELF-processing, lyase; 1.29A {Escherichia coli} SCOP: b.52.2.1 PDB: 1pqf_A 1pt1_A 1pt0_A 1pyq_A 1ppy_A 1pqe_A 1pyu_B 1aw8_B 1aw8_E 1pyu_A 1aw8_A Probab=21.99 E-value=35 Score=15.23 Aligned_cols=33 Identities=15% Similarity=0.296 Sum_probs=27.5 Q ss_pred CCCEEEEEEEECCCCEEEEEECCCCCCEEECCC Q ss_conf 777088999727996099995187852256486 Q gi|254781135|r 2 KSGEWVTFQYTTPDKTFLIALNGQDERQIYNGN 34 (83) Q Consensus 2 s~g~W~~vq~tT~Gg~fL~~~NG~D~~~~ynGT 34 (83) .|.||+..-+.-+-||=.+++||+-|++.--|- T Consensus 68 NG~Rf~TYvI~g~~gSg~I~lNGAAAr~~~~GD 100 (143) T 1pqh_A 68 NGKRFSTYAIAAERGSRIISVNGAAAHCASVGD 100 (143) T ss_dssp TCCEEEEEEEEECTTCCCEECCGGGGGTCCTTC T ss_pred CCCEEEEEEEECCCCCCEEEECCHHHHCCCCCC T ss_conf 997799999963588875874688885479999 No 3 >1vc3_B L-aspartate-alpha-decarboxylase heavy chain; tetramer, pyruvoyl group, riken structural genomics/proteomics initiative, RSGI; 1.50A {Thermus thermophilus} PDB: 2eeo_B Probab=16.23 E-value=38 Score=15.04 Aligned_cols=32 Identities=16% Similarity=0.282 Sum_probs=26.0 Q ss_pred CCCEEEEEEEECCCCEEEEEECCCCCCEEECC Q ss_conf 77708899972799609999518785225648 Q gi|254781135|r 2 KSGEWVTFQYTTPDKTFLIALNGQDERQIYNG 33 (83) Q Consensus 2 s~g~W~~vq~tT~Gg~fL~~~NG~D~~~~ynG 33 (83) .|.||+..-+.-+-||=.+++||+-|++.--| T Consensus 27 NG~Rf~TYvI~g~~gSg~I~lNGaAAr~~~~G 58 (96) T 1vc3_B 27 NGARLTTYALPGERGSGVIGINGAAAHLVKPG 58 (96) T ss_dssp TCCEEEEECEEECTTTTCEEEEGGGGGTCCTT T ss_pred CCCEEEEEEEECCCCCCEEEECCHHHHCCCCC T ss_conf 99588899997248876487467887347999 No 4 >2c45_A Aspartate 1-decarboxylase precursor; double-PSI beta barrel, lyase, zymogen, pantothenate biosynthesis, pyruvate; 2.99A {Mycobacterium tuberculosis} Probab=14.63 E-value=56 Score=14.08 Aligned_cols=33 Identities=21% Similarity=0.346 Sum_probs=27.0 Q ss_pred CCCEEEEEEEECCCCEEEEEECCCCCCEEECCC Q ss_conf 777088999727996099995187852256486 Q gi|254781135|r 2 KSGEWVTFQYTTPDKTFLIALNGQDERQIYNGN 34 (83) Q Consensus 2 s~g~W~~vq~tT~Gg~fL~~~NG~D~~~~ynGT 34 (83) .|.|++..-+.-+-||=.+++||+-|++.--|- T Consensus 51 NG~Rf~TYvI~g~~gSg~I~lNGaAA~~~~~GD 83 (139) T 2c45_A 51 NGARLVTYAITGERGSGVIGINGAAAHLVHPGD 83 (139) T ss_dssp TCCEEEECEEEECTTTTCEEEESSTTTTSCTTC T ss_pred CCCEEEEEEEECCCCCCEEEECCHHHHCCCCCC T ss_conf 995889999876888852763667874469999 No 5 >2wj9_A ARDB, intergenic-region protein; antirestriction, hydrolase inhibitor; 1.62A {Escherichia coli} Probab=12.46 E-value=77 Score=13.33 Aligned_cols=40 Identities=13% Similarity=0.317 Sum_probs=26.7 Q ss_pred CCCEEEEEEEECCCCEEEEEEC---CCCCCEEECCCCCCCCCCC Q ss_conf 7770889997279960999951---8785225648642464445 Q gi|254781135|r 2 KSGEWVTFQYTTPDKTFLIALN---GQDERQIYNGNNCKSSLLP 42 (83) Q Consensus 2 s~g~W~~vq~tT~Gg~fL~~~N---G~D~~~~ynGTtWt~~~~~ 42 (83) .||.|+.....+ ||-|+.--. +.+.-+++|..+|-.-... T Consensus 89 ~GG~W~f~~LsN-GG~yMaP~~~~~~~~~~~l~n~~Ngf~~evS 131 (181) T 2wj9_A 89 CGGIWNLYTLNN-GGAFMAPEPDDDDDETWVLFNAMNGNRAEMS 131 (181) T ss_dssp C--CEEEEEETT-SCEEEEEC------CCEEEEETTTTEEEEEC T ss_pred CCCEEEEEEECC-CEEEECCCCCCCCCCCEEEECCCCCCCCEEC T ss_conf 998578999169-8267675765556631257517987765277 No 6 >1uhe_A Aspartate 1-decarboxylase alpha chain; double-PSI beta barrel, lyase; HET: NSN; 1.55A {Helicobacter pylori} SCOP: b.52.2.1 PDB: 1uhd_A Probab=12.19 E-value=56 Score=14.07 Aligned_cols=31 Identities=19% Similarity=0.334 Sum_probs=21.7 Q ss_pred CCCEEEEEEEECC-CCEEEEEECCCCCCEEECCC Q ss_conf 7770889997279-96099995187852256486 Q gi|254781135|r 2 KSGEWVTFQYTTP-DKTFLIALNGQDERQIYNGN 34 (83) Q Consensus 2 s~g~W~~vq~tT~-Gg~fL~~~NG~D~~~~ynGT 34 (83) .|.||+..-+.-+ +| .+++||+-|++.--|- T Consensus 26 NG~Rf~TYvI~g~~sg--~I~lNGaAAr~~~~GD 57 (97) T 1uhe_A 26 NGERFSTYVILGKKRG--EICVNGAAARKVAIGD 57 (97) T ss_dssp TCCEEEEECEEECSTT--CEEEEGGGGGGCCTTC T ss_pred CCCEEEEEEEECCCCC--EEEECCHHHHCCCCCC T ss_conf 9958898998327888--7987878983479999 No 7 >3l2f_A Glycocyamine kinase beta chain; phosphagen kinase, transition state ANA kinase, transferase; HET: ADP; 2.30A {Namalycastis SP} PDB: 3l2e_B 3l2d_A* 3l2g_A* 3l2e_A Probab=10.57 E-value=89 Score=12.97 Aligned_cols=22 Identities=23% Similarity=0.493 Sum_probs=17.6 Q ss_pred EEECCCCEEEEEECCCCCCEEE Q ss_conf 9727996099995187852256 Q gi|254781135|r 10 QYTTPDKTFLIALNGQDERQIY 31 (83) Q Consensus 10 q~tT~Gg~fL~~~NG~D~~~~y 31 (83) .|-+..++|++.+|..|-.|+- T Consensus 228 i~~n~dk~~~vwVNEEDHlRIi 249 (390) T 3l2f_A 228 IWHNNEKNFLVWINEEDHIRVI 249 (390) T ss_dssp EEEESSSSEEEEESSSSSEEEE T ss_pred EEECCCCCEEEEECCCCEEEEE T ss_conf 5775897078997466638999 No 8 >3n5b_B ASR0485 protein; PII, PIPX, transcription regulator, signal transducer; HET: ADP; 1.90A {Nostoc} Probab=10.06 E-value=72 Score=13.49 Aligned_cols=36 Identities=8% Similarity=0.158 Sum_probs=22.6 Q ss_pred EEEEECCCCEEEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEEEEC Q ss_conf 9997279960999951878522564864246444565454211001355410143115686624 Q gi|254781135|r 8 TFQYTTPDKTFLIALNGQDERQIYNGNNCKSSLLPIICAGHNQNNPVYFSYGWFFKNRQWYIAS 71 (83) Q Consensus 8 ~vq~tT~Gg~fL~~~NG~D~~~~ynGTtWt~~~~~~~~a~~t~~~~~~ls~~w~fkNRlwFiq~ 71 (83) +.||+|=|--|.+|.-|.. .=.|..||.-||||+-. T Consensus 29 YLNHPTFGLLY~Vc~~~e~----------------------------~~LyaTLYAQRlFFLVt 64 (112) T 3n5b_B 29 YINHPTWGLLYRICMVDES----------------------------QDLFTTLYAQRLFFLVG 64 (112) T ss_dssp EEEETTTEEEEEEEEEETT----------------------------EEEEEESSSSCCEEEEE T ss_pred CCCCCCCCHHEEEEECCCC----------------------------CHHHHHHHHHHHEEEEE T ss_conf 0268850321064057887----------------------------18999999875304798 No 9 >1m15_A Arginine kinase, AK; creatine kinase, phosphagen kinase, transition state analog, adenosine triphosphate, transferas; HET: ARG ADP; 1.20A {Limulus polyphemus} SCOP: a.83.1.1 d.128.1.2 PDB: 1m80_A 3m10_A 1bg0_A* 1p50_A* 1sd0_A* 1p52_A* 1rl9_A* 2j1q_A Probab=9.64 E-value=97 Score=12.77 Aligned_cols=21 Identities=33% Similarity=0.551 Sum_probs=17.2 Q ss_pred EECCCCEEEEEECCCCCCEEE Q ss_conf 727996099995187852256 Q gi|254781135|r 11 YTTPDKTFLIALNGQDERQIY 31 (83) Q Consensus 11 ~tT~Gg~fL~~~NG~D~~~~y 31 (83) +-+..++|++++|..|-.|+- T Consensus 211 ~~n~d~~~~i~VNeEDHlRI~ 231 (357) T 1m15_A 211 FHNDAKTFLVWVNEEDHLRII 231 (357) T ss_dssp EEETTSSEEEEESSSSSEEEE T ss_pred EECCCCCEEEEECCCCEEEEE T ss_conf 765887278997466628999 No 10 >3jpz_A Lombricine kinase; mixed alpha / beta, transferase; 1.95A {Urechis caupo} PDB: 3jq3_A* Probab=9.54 E-value=98 Score=12.75 Aligned_cols=21 Identities=33% Similarity=0.604 Sum_probs=17.4 Q ss_pred EECCCCEEEEEECCCCCCEEE Q ss_conf 727996099995187852256 Q gi|254781135|r 11 YTTPDKTFLIALNGQDERQIY 31 (83) Q Consensus 11 ~tT~Gg~fL~~~NG~D~~~~y 31 (83) |-+..++|++.+|..|-.|+- T Consensus 205 ~~n~d~~~~vwVNEEDHlRI~ 225 (366) T 3jpz_A 205 WHNNEKTFLIWINEEDHMRVI 225 (366) T ss_dssp EEETTSCEEEEESSSSSEEEE T ss_pred EECCCCCEEEEECCCCEEEEE T ss_conf 885897178997366628999 Done!