RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254781135|ref|YP_003065548.1| hypothetical protein
CLIBASIA_05185 [Candidatus Liberibacter asiaticus str. psy62]
         (83 letters)



>2hd5_A Ubiquitin carboxyl-terminal hydrolase 2; deubiquitinating
           protease, cysteine protease, substrate enzyme complex,
           hydrolase; 1.85A {Homo sapiens} (A:1-125,A:240-359)
          Length = 245

 Score = 24.9 bits (53), Expect = 4.2
 Identities = 10/57 (17%), Positives = 18/57 (31%)

Query: 17  TFLIALNGQDERQIYNGNNCKSSLLPIICAGHNQNNPVYFSYGWFFKNRQWYIASDS 73
            F +      E    N N+   +L  +           Y +Y       +W+  +DS
Sbjct: 149 NFPLRDLDLREFASENTNHAVYNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDS 205


>1nm8_A Carnitine O-acetyltransferase; two equally sized domains,
           anti-parallel beta-strand; 1.60A {Homo sapiens}
           (A:92-385)
          Length = 294

 Score = 23.9 bits (51), Expect = 7.7
 Identities = 6/72 (8%), Positives = 18/72 (25%), Gaps = 6/72 (8%)

Query: 1   MKSGEWVTFQYTTPDKTFLIALNGQDERQIYNGNNCKSSLLPIICAGHNQNNPVYFSYGW 60
           +        QY     +  +    QD    ++      + + ++          +F    
Sbjct: 51  LGGKPLCMNQYYQILSSCRVPGPKQDTVSNFSKTKKPPTHITVVHNYQ------FFELDV 104

Query: 61  FFKNRQWYIASD 72
           +  +     A  
Sbjct: 105 YHSDGTPLTADQ 116


>1nun_A Fibroblast growth factor-10; beta-trefoil fold,
           immunoglobulin-like domain, hormone/growth
           factor/membrane protein complex; HET: 15P; 2.90A {Homo
           sapiens} (A:)
          Length = 145

 Score = 23.7 bits (51), Expect = 9.5
 Identities = 7/17 (41%), Positives = 9/17 (52%)

Query: 54  VYFSYGWFFKNRQWYIA 70
            Y S+ W    RQ Y+A
Sbjct: 100 TYASFNWQHNGRQMYVA 116


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.321    0.135    0.461 

Gapped
Lambda     K      H
   0.267   0.0375    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 682,479
Number of extensions: 24730
Number of successful extensions: 67
Number of sequences better than 10.0: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 8
Length of query: 83
Length of database: 4,956,049
Length adjustment: 47
Effective length of query: 36
Effective length of database: 3,367,214
Effective search space: 121219704
Effective search space used: 121219704
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (24.0 bits)