RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781135|ref|YP_003065548.1| hypothetical protein
CLIBASIA_05185 [Candidatus Liberibacter asiaticus str. psy62]
         (83 letters)



>d1f76a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Escherichia
          coli [TaxId: 562]}
          Length = 336

 Score = 24.9 bits (53), Expect = 1.6
 Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 37 KSSLLPIICAGHNQNNPVYFSYGWFFKNRQWYIASDSMDAWTCQLKL 83
          K    P+ C G    NP+  + G   K+ +   A  +M   + ++  
Sbjct: 41 KVPAKPVNCMGLTFKNPLGLAAG-LDKDGECIDALGAMGFGSIEIGT 86


>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
           (Gallus gallus), pectoral muscle [TaxId: 9031]}
          Length = 710

 Score = 23.9 bits (51), Expect = 3.3
 Identities = 9/51 (17%), Positives = 15/51 (29%)

Query: 15  DKTFLIALNGQDERQIYNGNNCKSSLLPIICAGHNQNNPVYFSYGWFFKNR 65
           D +F+  L  +         + +       C  H      Y +  W  KN 
Sbjct: 473 DTSFVEKLIQEQGNHAKFQKSKQLKDKTEFCILHYAGKVTYNASAWLTKNM 523


>d1qqka_ b.42.1.1 (A:) Keratinocyte growth factor, FGF7 {Rat (Rattus
           norvegicus) [TaxId: 10116]}
          Length = 132

 Score = 23.6 bits (51), Expect = 4.3
 Identities = 4/17 (23%), Positives = 7/17 (41%)

Query: 54  VYFSYGWFFKNRQWYIA 70
            Y S  W     + ++A
Sbjct: 88  TYASAKWTHSGGEMFVA 104


>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
           ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 101

 Score = 23.1 bits (49), Expect = 6.8
 Identities = 4/24 (16%), Positives = 9/24 (37%), Gaps = 3/24 (12%)

Query: 44  ICAGHNQNNPVYFSYGWFFKNRQW 67
           +     Q   +Y ++    +  QW
Sbjct: 81  VVDDLGQKITLYLNF---VEKVQW 101


>d1nuna_ b.42.1.1 (A:) Fibroblast growth factor-10, FGF10 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 139

 Score = 22.9 bits (49), Expect = 6.8
 Identities = 7/17 (41%), Positives = 9/17 (52%)

Query: 54  VYFSYGWFFKNRQWYIA 70
            Y S+ W    RQ Y+A
Sbjct: 95  TYASFNWQHNGRQMYVA 111


>d1qh4a2 d.128.1.2 (A:103-381) Creatine kinase, C-terminal domain
           {Chicken (Gallus gallus), brain-type [TaxId: 9031]}
          Length = 279

 Score = 22.6 bits (48), Expect = 8.6
 Identities = 6/16 (37%), Positives = 11/16 (68%)

Query: 11  YTTPDKTFLIALNGQD 26
           +   +KTFL+ +N +D
Sbjct: 116 WHNDNKTFLVWINEED 131


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.135    0.461 

Gapped
Lambda     K      H
   0.267   0.0393    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 336,440
Number of extensions: 12649
Number of successful extensions: 43
Number of sequences better than 10.0: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 13
Length of query: 83
Length of database: 2,407,596
Length adjustment: 49
Effective length of query: 34
Effective length of database: 1,734,826
Effective search space: 58984084
Effective search space used: 58984084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.8 bits)