Query gi|254781136|ref|YP_003065549.1| hypothetical protein CLIBASIA_05190 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 114
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Wed Jun 1 22:01:56 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781136.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3it3_A Acid phosphatase; HAP, 56.4 16 0.00047 17.9 4.4 54 2-57 52-105 (247)
2 >2cay_A VPS36 PH domain, vacuo 43.6 25 0.00075 16.7 3.9 55 52-108 20-76 (145)
3 >2yx1_A Hypothetical protein M 31.0 17 0.00051 17.7 0.8 31 4-34 14-44 (70)
4 >1q1q_A SULT2B1A, sulfotransfe 19.2 38 0.0011 15.6 0.7 33 9-41 6-40 (42)
5 >3c2g_A SYS-1 protein; beta-ca 18.1 68 0.002 14.1 1.8 17 32-48 81-97 (184)
6 >1dkq_A Phytase; histidine aci 18.1 73 0.0022 14.0 3.8 52 2-56 59-112 (271)
7 >1ica_A Insect defensin A; ant 13.9 58 0.0017 14.6 0.6 10 105-114 31-40 (40)
8 >2ze6_A Isopentenyl transferas 13.2 99 0.0029 13.2 2.4 29 35-63 73-101 (125)
9 >1kbi_A Cytochrome B2, L-LCR; 12.8 1E+02 0.003 13.1 1.7 22 82-103 20-41 (94)
10 >1j03_A Putative steroid bindi 12.0 1E+02 0.0031 13.1 1.4 16 85-100 20-35 (102)
No 1
>>3it3_A Acid phosphatase; HAP, hydrolase; HET: 3AM; 1.50A {Francisella tularensis subsp} PDB: 2glc_A 2glb_A 2gla_A 3it0_A* 3it1_A* 3it2_A 2p36_A* (A:1-130,A:226-342)
Probab=56.35 E-value=16 Score=17.86 Aligned_cols=54 Identities=26% Similarity=0.432 Sum_probs=42.0
Q ss_pred CHHHHHHCCCCCCCCCCEECCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 04555311456675520212567636872231778778789998753656668522
Q gi|254781136|r 2 SQFLRNQYFDSNNLSGEYISSKDQNFLYFPTEKQQLQENAFSILHNFWPTTKGPIM 57 (114)
Q Consensus 2 sqflrnqyfdsnnlsgeyisskdqnflyfptekqqlqenafsilhnfwpttkgpim 57 (114)
.+++|..|-+..++..+... ..++....|+++...+-|-+.++.|||..++++.
T Consensus 52 G~~lr~rY~~~~~~~~~~~~--~~~i~~~st~~~Rt~~Sa~af~~Gl~p~~~~~~~ 105 (247)
T 3it3_A 52 GLQLRKRYIDKFGLLPEHYV--DQSIYVLSSHTNRTVVSAQSLLMGLYPAGTGPLI 105 (247)
T ss_dssp HHHHHHHHTTTSCSSCSSCC--TTSEEEEECSSHHHHHHHHHHHHHHSCTTSSCEE
T ss_pred HHHHHHHHHHHHCCCCCCCC--CCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 99999998786177886578--5727999589669999999999853577667655
No 2
>>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} (A:)
Probab=43.58 E-value=25 Score=16.65 Aligned_cols=55 Identities=22% Similarity=0.256 Sum_probs=33.3
Q ss_pred CCCCEECCCCEEEEEEECCCCEEEEEEECC--CCEEEEEEECCCEEEEECCCCCCCCCE
Q ss_conf 668522055403577508864443442045--540278862460666512422233201
Q gi|254781136|r 52 TKGPIMRGGCRKICTLDSNSSIISAFSYRS--STQQRVFLANHREIYDVTDASSMQSAT 108 (114)
Q Consensus 52 tkgpimrggcrkictldsnssiisafsyrs--stqqrvflanhreiydvtdassmqsat 108 (114)
..+|+...|-.-++..+.-.- +--.+++ ...-+++|.+||-||--...+.++|..
T Consensus 20 ~~~p~l~~~E~~l~~~~~V~l--~~~~~k~~~~~~G~l~LTshRlIf~~~~~~~~~s~~ 76 (145)
T 2cay_A 20 SGQPLLREGEKDIFIDQSVGL--YHGKSKILQRQRGRIFLTSQRIIYIDDAKPTQNSLG 76 (145)
T ss_dssp TSCBCCCTTCCEEEEEEEEEE--EETTEECTTCSSEEEEEESSEEEEEESSCHHHHCEE
T ss_pred CCCEECCCCEEEEEEECCEEE--EECCCCCCCCCCCEEEEEEEEEEEECCCCCCEEEEE
T ss_conf 898673599179999478578--868855656667569997118999569987456999
No 3
>>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme; HET: SFG; 2.20A {Methanocaldococcus jannaschii} (A:1-70)
Probab=31.04 E-value=17 Score=17.66 Aligned_cols=31 Identities=26% Similarity=0.535 Sum_probs=25.6
Q ss_pred HHHHHCCCCCCCCCCEECCCCCCEEEECCCH
Q ss_conf 5553114566755202125676368722317
Q gi|254781136|r 4 FLRNQYFDSNNLSGEYISSKDQNFLYFPTEK 34 (114)
Q Consensus 4 flrnqyfdsnnlsgeyisskdqnflyfptek 34 (114)
-.|....+.+-|...|--..|.+|+|+|--.
T Consensus 14 ~~Rr~L~~~~lld~~ykI~~e~~~vyIPv~~ 44 (70)
T 2yx1_A 14 QTRRILIENNLLNKDYKITSEGNYLYLPIKD 44 (70)
T ss_dssp HHHHHHHHTTCBCTTSCCEEETTEEEEEBCS
T ss_pred HHHHHHHHCCCCCCCCEEEEECCEEEEEECC
T ss_conf 9999997694706896476739989998067
No 4
>>1q1q_A SULT2B1A, sulfotransferase family, cytosolic, 2B, member 1 isoform A; pregnenolone, PAP; HET: A3P NHE; 2.91A {Homo sapiens} (A:1-42)
Probab=19.15 E-value=38 Score=15.64 Aligned_cols=33 Identities=36% Similarity=0.524 Sum_probs=22.4
Q ss_pred CCCCCCCCCCEECCCCCCEEE--ECCCHHHHHHHH
Q ss_conf 145667552021256763687--223177877878
Q gi|254781136|r 9 YFDSNNLSGEYISSKDQNFLY--FPTEKQQLQENA 41 (114)
Q Consensus 9 yfdsnnlsgeyisskdqnfly--fptekqqlqena 41 (114)
-+.|.+|+|||..-|.-+|-- +..|.-.+.||+
T Consensus 6 ~~~Sqkl~geYFrYKGipFPvG~YspESis~aEN~ 40 (42)
T 1q1q_A 6 PFHSQKLPGEYFRYKGVPFPVGLYSLESISLAENT 40 (42)
T ss_dssp ------CCCCEEEETTEEEEBTTBCHHHHHHHHHC
T ss_pred CCCCCCCCCCEEEECCEEECCCCCCHHHHHHHHHC
T ss_conf 88878888881888999947655899999999856
No 5
>>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A* (A:436-619)
Probab=18.10 E-value=68 Score=14.15 Aligned_cols=17 Identities=41% Similarity=0.489 Sum_probs=13.8
Q ss_pred CCHHHHHHHHHHHHHHH
Q ss_conf 31778778789998753
Q gi|254781136|r 32 TEKQQLQENAFSILHNF 48 (114)
Q Consensus 32 tekqqlqenafsilhnf 48 (114)
..||||-|.+||.|--.
T Consensus 81 ~t~qqlier~~sll~~l 97 (184)
T 3c2g_A 81 STKQQLVERTISLLLVL 97 (184)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 68999999999999999
No 6
>>1dkq_A Phytase; histidine acid phosphatase fold, hydrolase; HET: IHP; 2.05A {Escherichia coli} (A:1-120,A:260-410)
Probab=18.09 E-value=73 Score=13.97 Aligned_cols=52 Identities=6% Similarity=0.088 Sum_probs=36.8
Q ss_pred CHHHHHHCCCCC--CCCCCEECCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf 045553114566--7552021256763687223177877878999875365666852
Q gi|254781136|r 2 SQFLRNQYFDSN--NLSGEYISSKDQNFLYFPTEKQQLQENAFSILHNFWPTTKGPI 56 (114)
Q Consensus 2 sqflrnqyfdsn--nlsgeyisskdqnflyfptekqqlqenafsilhnfwpttkgpi 56 (114)
.++||..|.+-- -+++.|- ...+....++++...+-|-+.+..|||....+|
T Consensus 59 G~~lr~~Y~~~~~~~~~~~~~---~~~i~~rss~~~Rt~~Sa~a~~~Gl~p~~~~~~ 112 (271)
T 1dkq_A 59 GHYQRQRLVADGLLAKKGCPQ---SGQVAIIADVDERTRKTGEAFAAGLAPDCAITV 112 (271)
T ss_dssp HHHHHHHHHHTTSSCSSSCCC---TTTEEEEECSSHHHHHHHHHHHHHHSTTCCCCE
T ss_pred HHHHHHHHHHHCCCCCCCCCC---CCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 999999988745677767887---230799827962999999999975589867653
No 7
>>1ica_A Insect defensin A; antibacterial protein; NMR {Protophormia terraenovae} (A:)
Probab=13.87 E-value=58 Score=14.57 Aligned_cols=10 Identities=50% Similarity=1.165 Sum_probs=6.6
Q ss_pred CCCEEEEECC
Q ss_conf 3201567619
Q gi|254781136|r 105 QSATVCVCRE 114 (114)
Q Consensus 105 qsatvcvcre 114 (114)
.+..|||||+
T Consensus 31 n~k~vCvCR~ 40 (40)
T 1ica_A 31 NGKGVCVCRN 40 (40)
T ss_dssp CSSSCEECCC
T ss_pred CCCEEEEECC
T ss_conf 7976787469
No 8
>>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis, plasmid; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A (A:1-125)
Probab=13.17 E-value=99 Score=13.21 Aligned_cols=29 Identities=14% Similarity=0.282 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHCCCCCCCEECCCCEE
Q ss_conf 78778789998753656668522055403
Q gi|254781136|r 35 QQLQENAFSILHNFWPTTKGPIMRGGCRK 63 (114)
Q Consensus 35 qqlqenafsilhnfwpttkgpimrggcrk 63 (114)
.+..|-+.....+.|-+.|.|||-||+..
T Consensus 73 ~~f~e~~~~~~~~~~~~g~~~ilv~gt~~ 101 (125)
T 2ze6_A 73 AESAHRRLIFEVDWRKSEEGLILEGGSIS 101 (125)
T ss_dssp HHHHHHHHHHHHHTTTTSSEEEEEECCHH
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEECCCHH
T ss_conf 99999999999999966998899888199
No 9
>>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} (A:1-94)
Probab=12.84 E-value=1e+02 Score=13.15 Aligned_cols=22 Identities=14% Similarity=0.262 Sum_probs=15.8
Q ss_pred CCEEEEEEECCCEEEEECCCCC
Q ss_conf 5402788624606665124222
Q gi|254781136|r 82 STQQRVFLANHREIYDVTDASS 103 (114)
Q Consensus 82 stqqrvflanhreiydvtdass 103 (114)
.+..+..++-+..+||||+--.
T Consensus 20 ~~~~~~wi~i~g~VYDvt~f~~ 41 (94)
T 1kbi_A 20 NKPDDCWVVINGYVYDLTRFLP 41 (94)
T ss_dssp EETTEEEEEETTEEEECTTTGG
T ss_pred CCCCCEEEEECCEEEECCCCCC
T ss_conf 9966569999999856323631
No 10
>>1j03_A Putative steroid binding protein; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} (A:)
Probab=11.96 E-value=1e+02 Score=13.05 Aligned_cols=16 Identities=25% Similarity=0.605 Sum_probs=0.0
Q ss_pred EEEEEECCCEEEEECC
Q ss_conf 2788624606665124
Q gi|254781136|r 85 QRVFLANHREIYDVTD 100 (114)
Q Consensus 85 qrvflanhreiydvtd 100 (114)
.+.+++-+..+||||+
T Consensus 20 ~~~wiai~G~VYDVT~ 35 (102)
T 1j03_A 20 KPIYVAIKGRVFDVTT 35 (102)
T ss_dssp CCBEEEETTEEEECGG
T ss_pred CCEEEEECCEEEEECC
T ss_conf 5279997889998358
Done!