RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781136|ref|YP_003065549.1| hypothetical protein
CLIBASIA_05190 [Candidatus Liberibacter asiaticus str. psy62]
         (114 letters)



>d2caya1 b.55.1.12 (A:1-99,A:252-282) Vacuolar protein sorting
           protein 36, VPS36 {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 130

 Score = 22.9 bits (49), Expect = 6.6
 Identities = 7/21 (33%), Positives = 10/21 (47%)

Query: 86  RVFLANHREIYDVTDASSMQS 106
           R+FL + R IY      +  S
Sbjct: 46  RIFLTSQRIIYIDDAKPTQNS 66


>d2g9hd1 b.40.2.2 (D:4-86) Enterotoxin type I, SEI {Staphylococcus
          aureus [TaxId: 1280]}
          Length = 83

 Score = 23.2 bits (50), Expect = 6.8
 Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 3/36 (8%)

Query: 5  LRNQYFDSNNLSGEYISSKDQ---NFLYFPTEKQQL 37
          LRN Y   + +  + +  K+    N L F T    L
Sbjct: 6  LRNFYTKHDYIDLKGLIDKNLPSANQLEFSTGINDL 41


>d1vdla_ a.5.2.1 (A:) Ubiquitin carboxyl-terminal hydrolase 25
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 80

 Score = 22.7 bits (48), Expect = 8.2
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 81  SSTQQRVFLANHREIYDVTDASSMQSA 107
           +   Q+ FL   REI  + DA  +Q A
Sbjct: 20  AQKHQQTFLNQLREITGINDAQILQQA 46


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.130    0.386 

Gapped
Lambda     K      H
   0.267   0.0658    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 374,111
Number of extensions: 13625
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 5
Length of query: 114
Length of database: 2,407,596
Length adjustment: 72
Effective length of query: 42
Effective length of database: 1,419,036
Effective search space: 59599512
Effective search space used: 59599512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.0 bits)