BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781136|ref|YP_003065549.1| hypothetical protein
CLIBASIA_05190 [Candidatus Liberibacter asiaticus str. psy62]
         (114 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781136|ref|YP_003065549.1| hypothetical protein CLIBASIA_05190 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 114

 Score =  240 bits (612), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 114/114 (100%), Positives = 114/114 (100%)

Query: 1   MSQFLRNQYFDSNNLSGEYISSKDQNFLYFPTEKQQLQENAFSILHNFWPTTKGPIMRGG 60
           MSQFLRNQYFDSNNLSGEYISSKDQNFLYFPTEKQQLQENAFSILHNFWPTTKGPIMRGG
Sbjct: 1   MSQFLRNQYFDSNNLSGEYISSKDQNFLYFPTEKQQLQENAFSILHNFWPTTKGPIMRGG 60

Query: 61  CRKICTLDSNSSIISAFSYRSSTQQRVFLANHREIYDVTDASSMQSATVCVCRE 114
           CRKICTLDSNSSIISAFSYRSSTQQRVFLANHREIYDVTDASSMQSATVCVCRE
Sbjct: 61  CRKICTLDSNSSIISAFSYRSSTQQRVFLANHREIYDVTDASSMQSATVCVCRE 114


>gi|254780784|ref|YP_003065197.1| polynucleotide phosphorylase/polyadenylase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 699

 Score = 22.7 bits (47), Expect = 1.7,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query: 38  QENAFSILHNFWPTTKGPIMRGG 60
           Q N F + +NF P   G + R G
Sbjct: 370 QRNDFMMHYNFLPCATGEVSRMG 392


>gi|254780151|ref|YP_003064564.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 408

 Score = 21.9 bits (45), Expect = 3.5,   Method: Composition-based stats.
 Identities = 8/22 (36%), Positives = 14/22 (63%)

Query: 23  KDQNFLYFPTEKQQLQENAFSI 44
           +DQ++  F T +QQL +  F +
Sbjct: 171 RDQSYFLFATTQQQLCDLRFPL 192


>gi|254780533|ref|YP_003064946.1| 3-oxoacyl-(acyl carrier protein) synthase II [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 423

 Score = 21.6 bits (44), Expect = 4.0,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 16/34 (47%)

Query: 59  GGCRKICTLDSNSSIISAFSYRSSTQQRVFLANH 92
           GG RKI       SIIS  S   S + ++   NH
Sbjct: 132 GGPRKISPFTVPGSIISLLSGNISIRNQLRGPNH 165


>gi|254781166|ref|YP_003065579.1| enoyl-(acyl carrier protein) reductase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 284

 Score = 21.2 bits (43), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 8/20 (40%), Positives = 13/20 (65%)

Query: 9   YFDSNNLSGEYISSKDQNFL 28
           + D   L+G YI++  +NFL
Sbjct: 98  FSDKAELTGPYINTTRENFL 117


>gi|254780743|ref|YP_003065156.1| putative uracil-DNA glycosylase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 261

 Score = 21.2 bits (43), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 9/18 (50%), Positives = 12/18 (66%)

Query: 11  DSNNLSGEYISSKDQNFL 28
           DS+N+SG+  S K  N L
Sbjct: 119 DSDNISGKPFSGKTGNML 136


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.320    0.130    0.386 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,837
Number of Sequences: 1233
Number of extensions: 2462
Number of successful extensions: 11
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of query: 114
length of database: 328,796
effective HSP length: 63
effective length of query: 51
effective length of database: 251,117
effective search space: 12806967
effective search space used: 12806967
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 33 (17.3 bits)