RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254781137|ref|YP_003065550.1| hypothetical protein
CLIBASIA_05195 [Candidatus Liberibacter asiaticus str. psy62]
         (195 letters)



>gnl|CDD|181838 PRK09418, PRK09418, bifunctional 2',3'-cyclic nucleotide
           2'-phosphodiesterase/3'-nucleotidase precursor protein;
           Reviewed.
          Length = 780

 Score = 31.6 bits (71), Expect = 0.13
 Identities = 11/25 (44%), Positives = 20/25 (80%)

Query: 15  GLSRFETVYQNQDESTVLLVSFLQQ 39
           G+S+ E VYQ+QDE+  ++V ++Q+
Sbjct: 569 GVSKGEVVYQSQDETRQIIVKYMQE 593


>gnl|CDD|161934 TIGR00571, dam, DNA adenine methylase (dam).  All proteins in this
           family for which functions are known are DNA-adenine
           methyltransferases. This family is based on the
           phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
           Stanford University). The DNA adenine methylase (dam) of
           E. coli and related species is instrumental in
           distinguishing the newly synthesized strand during DNA
           replication for methylation-directed mismatch repair.
           This family includes several phage methylases and a
           number of different restriction enzyme chromosomal
           site-specific modification systems.
          Length = 266

 Score = 29.6 bits (67), Expect = 0.56
 Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 12/82 (14%)

Query: 52  QLLQEIKIDHWPFHLPQD---YYRPLLGGAMVMLDLSLARPVINAVDWGIV---KRISHT 105
            LL EIK      HLP++      P +GG  V  +L+  R ++N ++  ++   K I + 
Sbjct: 13  SLLPEIKK-----HLPKNFNCLVEPFVGGGAVFFNLNPKRYLLNDINEDLINLYKAIKNN 67

Query: 106 PWYWI-DGRMIHLSINSPATFR 126
               I D R ++   N+   + 
Sbjct: 68  VDELILDVRKLYAEENTKEYYY 89


>gnl|CDD|180165 PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional.
          Length = 342

 Score = 28.2 bits (64), Expect = 1.5
 Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 1/20 (5%)

Query: 167 RRAQGLSFDDCLR-EFDLAL 185
           RRA+GL+ ++CLR E  LAL
Sbjct: 279 RRARGLTLEECLRRELRLAL 298


>gnl|CDD|178540 PLN02954, PLN02954, phosphoserine phosphatase.
          Length = 224

 Score = 26.2 bits (58), Expect = 5.9
 Identities = 8/19 (42%), Positives = 11/19 (57%), Gaps = 1/19 (5%)

Query: 160 KDIIWRWRRAQGLSFD-DC 177
           KD++  WR A  + FD D 
Sbjct: 3   KDVLELWRSADAVCFDVDS 21


>gnl|CDD|179344 PRK01862, PRK01862, putative voltage-gated ClC-type chloride
           channel ClcB; Provisional.
          Length = 574

 Score = 25.9 bits (57), Expect = 6.7
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 72  RPLLGGAMVMLDLSLARPVINAVDWGIVKRISHTPWYW 109
           R  LGG +V + +S+  P +    + +V  I H PW W
Sbjct: 277 RLALGGLLVGV-ISVWVPEVWGNGYSVVNTILHAPWTW 313


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.325    0.141    0.462 

Gapped
Lambda     K      H
   0.267   0.0637    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,348,012
Number of extensions: 208589
Number of successful extensions: 451
Number of sequences better than 10.0: 1
Number of HSP's gapped: 450
Number of HSP's successfully gapped: 9
Length of query: 195
Length of database: 5,994,473
Length adjustment: 88
Effective length of query: 107
Effective length of database: 4,092,969
Effective search space: 437947683
Effective search space used: 437947683
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (24.8 bits)