BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781137|ref|YP_003065550.1| hypothetical protein
CLIBASIA_05195 [Candidatus Liberibacter asiaticus str. psy62]
         (195 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781137|ref|YP_003065550.1| hypothetical protein CLIBASIA_05195 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 195

 Score =  401 bits (1030), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 195/195 (100%), Positives = 195/195 (100%)

Query: 1   MNVLAILNTVCDLVGLSRFETVYQNQDESTVLLVSFLQQAGEEICLKVDWPQLLQEIKID 60
           MNVLAILNTVCDLVGLSRFETVYQNQDESTVLLVSFLQQAGEEICLKVDWPQLLQEIKID
Sbjct: 1   MNVLAILNTVCDLVGLSRFETVYQNQDESTVLLVSFLQQAGEEICLKVDWPQLLQEIKID 60

Query: 61  HWPFHLPQDYYRPLLGGAMVMLDLSLARPVINAVDWGIVKRISHTPWYWIDGRMIHLSIN 120
           HWPFHLPQDYYRPLLGGAMVMLDLSLARPVINAVDWGIVKRISHTPWYWIDGRMIHLSIN
Sbjct: 61  HWPFHLPQDYYRPLLGGAMVMLDLSLARPVINAVDWGIVKRISHTPWYWIDGRMIHLSIN 120

Query: 121 SPATFRYFSKNWIIDSNKEAKHHITADDDSTLLPTYLLIKDIIWRWRRAQGLSFDDCLRE 180
           SPATFRYFSKNWIIDSNKEAKHHITADDDSTLLPTYLLIKDIIWRWRRAQGLSFDDCLRE
Sbjct: 121 SPATFRYFSKNWIIDSNKEAKHHITADDDSTLLPTYLLIKDIIWRWRRAQGLSFDDCLRE 180

Query: 181 FDLALIAEKILWLGG 195
           FDLALIAEKILWLGG
Sbjct: 181 FDLALIAEKILWLGG 195


>gi|254781096|ref|YP_003065509.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 474

 Score = 25.4 bits (54), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 7/54 (12%)

Query: 18  RFETVYQNQDESTVLLVSFLQQAGEEICLKVDWPQLLQEIKIDHWPFHLPQDYY 71
           +F + + + D   ++L+S +  AGE+       P+L++ IK+       PQ YY
Sbjct: 377 QFSSCFGDAD---IVLISPVYSAGEKEIPGFSSPELVKNIKLQGH----PQAYY 423


>gi|254780869|ref|YP_003065282.1| beta-lactamase domain-containing protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 559

 Score = 24.6 bits (52), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 75  LGGAMVMLDLSLARPVINAVDWGIVKR 101
           +G  +V+L  SL R V  A+D GI+K+
Sbjct: 250 IGRKIVLLGSSLKRVVSVAIDVGIIKK 276


>gi|254780503|ref|YP_003064916.1| putative glutamine synthetase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 461

 Score = 22.3 bits (46), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 159 IKDIIWRWRRAQGLSFDDCLRE 180
           I D IW++   QGL  D  + E
Sbjct: 194 IIDDIWKFSEKQGLEIDTLIHE 215


>gi|254780900|ref|YP_003065313.1| homoserine dehydrogenase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 438

 Score = 21.9 bits (45), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 8/10 (80%), Positives = 8/10 (80%)

Query: 171 GLSFDDCLRE 180
           GLSF DCL E
Sbjct: 175 GLSFQDCLEE 184


>gi|254780701|ref|YP_003065114.1| putative two-component sensor histidine kinase transcriptional
           regulatory protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 495

 Score = 21.9 bits (45), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 50/120 (41%), Gaps = 11/120 (9%)

Query: 6   ILNTVCDLVGLSRFETVYQNQDESTVLLVSFLQQAGEEICLKVDWPQLLQEIKIDHWPFH 65
           +LN + +++ LSR E       ES + L+  +++    + L+     +    KID     
Sbjct: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360

Query: 66  LPQDYYRPLLGGAMVMLDLSLARPVINAVDWGIVKRISHTPWYWIDGRMIHLSI--NSPA 123
           +  D      G   V+L+L     + NAV +  +    H    W  GR  ++SI  N P 
Sbjct: 361 VWADEK----GMRQVILNL-----LSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.325    0.141    0.462 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 131,477
Number of Sequences: 1233
Number of extensions: 5363
Number of successful extensions: 17
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 8
length of query: 195
length of database: 328,796
effective HSP length: 69
effective length of query: 126
effective length of database: 243,719
effective search space: 30708594
effective search space used: 30708594
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 36 (18.5 bits)