Query         gi|254781138|ref|YP_003065551.1| hypothetical protein CLIBASIA_05200 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 178
No_of_seqs    113 out of 799
Neff          7.3 
Searched_HMMs 33803
Date          Wed Jun  1 22:11:33 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781138.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >3fyr_A Sporulation inhibitor   42.9      15 0.00044   16.8   2.0   17   24-40     22-39  (48)
  2 >1gd9_A Aspartate aminotransfe  18.9      60  0.0018   13.4   2.0   33    5-37     28-61  (63)
  3 >3i4r_B Nuclear pore complex p  16.1      53  0.0016   13.7   0.9   26  140-165     1-26  (65)
  4 >3f3f_C Nucleoporin NUP85; str  11.5      95  0.0028   12.2   1.1   35    6-40    104-140 (228)
  5 >2cqs_A Cellobiose phosphoryla  11.2      98  0.0029   12.2   5.9   39  134-172    16-57  (104)
  6 >3jtx_A Aminotransferase; NP_2   9.9 1.1E+02  0.0032   11.9   1.2   19    5-23     27-46  (62)
  7 >3ezs_A Aminotransferase ASPB;   9.2 1.2E+02  0.0034   11.7   1.2   15    5-19     27-41  (62)
  8 >2oba_A Probable 6-pyruvoyl te   9.1      62  0.0018   13.3  -0.6   20    1-20     68-87  (138)
  9 >1wst_A MSAT, multiple substra   8.8 1.2E+02  0.0036   11.6   1.5   23    5-27     33-58  (70)
 10 >2a6q_A Antitoxin YEFM; YEFM,    8.3 1.1E+02  0.0034   11.8   0.5   17    2-18      6-22  (44)

No 1  
>>3fyr_A Sporulation inhibitor SDA; helical hairpin, histidine kinase inhibitor, sporulation regulation, alternative initiation; 1.97A {Bacillus subtilis} PDB: 1pv0_A 3d36_C* (A:)
Probab=42.92  E-value=15  Score=16.77  Aligned_cols=17  Identities=29%  Similarity=0.497  Sum_probs=14.0

Q ss_pred             HH-HHHHHHHHHHHHHHC
Q ss_conf             57-799999999996103
Q gi|254781138|r   24 LF-KNFLHRIEVKINRAL   40 (178)
Q Consensus        24 ~I-~~FI~~aE~rI~R~l   40 (178)
                      ++ |+||.+-|.+|.|+-
T Consensus        22 ~Ls~dFI~LIe~EI~RRs   39 (48)
T 3fyr_A           22 NLNRDFIELIENEIKRRS   39 (48)
T ss_dssp             TCCHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHH
T ss_conf             579999999999999973


No 2  
>>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence of substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} (A:38-83,A:264-280)
Probab=18.89  E-value=60  Score=13.37  Aligned_cols=33  Identities=15%  Similarity=0.148  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHH
Q ss_conf             899999999874265-003457799999999996
Q gi|254781138|r    5 FASLLIDVSHYVEKG-GFTYLFKNFLHRIEVKIN   37 (178)
Q Consensus         5 Y~~L~~~I~~~l~r~-dlt~~I~~FI~~aE~rI~   37 (178)
                      .-+|+.+|++|.+|. .+..---.||+-+-.+-.
T Consensus        28 ~peLReAIA~~y~~rygv~~~~~~~~~~~~~~~~   61 (63)
T 1gd9_A           28 LLELREAIAEKLKKQNGIETCPVTFIQYAAAKAL   61 (63)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCSCCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf             9999999999999872998210158999999998


No 3  
>>3i4r_B Nuclear pore complex protein NUP133; protein transport,structural protein, kinetochore, mRNA transport, nucleus, phosphoprotein, translocation; 3.53A {Homo sapiens} (B:357-421)
Probab=16.11  E-value=53  Score=13.66  Aligned_cols=26  Identities=4%  Similarity=0.175  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf             99999999741498889999999999
Q gi|254781138|r  140 YGLVEEIALWEQKIDKATTASALFQE  165 (178)
Q Consensus       140 ygaL~eA~~flk~~~~~~~~~~~y~~  165 (178)
                      +++|++.|.=.+|.+|++.|..+|.+
T Consensus         1 F~sLV~lCe~t~n~~RL~~Y~~kf~e   26 (65)
T 3i4r_B            1 FDILVQMCEQTDNQSRLQRYMTQFAD   26 (65)
T ss_dssp             CHHHHHHHHHHSSCTTHHHHHHHSCS
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHCC
T ss_conf             99999999946869999999998264


No 4  
>>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleoporin complex, nuclear pore complex, macromolecular assembly; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B (C:99-218,C:387-494)
Probab=11.53  E-value=95  Score=12.22  Aligned_cols=35  Identities=14%  Similarity=0.226  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHCCCCC-HHHH-HHHHHHHHHHHHHHC
Q ss_conf             9999999987426500-3457-799999999996103
Q gi|254781138|r    6 ASLLIDVSHYVEKGGF-TYLF-KNFLHRIEVKINRAL   40 (178)
Q Consensus         6 ~~L~~~I~~~l~r~dl-t~~I-~~FI~~aE~rI~R~l   40 (178)
                      +++...+.+|+||+|= |+.- .-|+..-+.+|.+-|
T Consensus       104 ~~~i~~li~WvNR~Dget~~wEq~cv~Il~~~~~~vL  140 (228)
T 3f3f_C          104 SEFIESLLNWINRSDGETNDWEQPCVDIISGKIHSIL  140 (228)
T ss_dssp             HHHHHHHHHHHHHHCCCTSSSHHHHHHHHTTCCGGGH
T ss_pred             CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHH
T ss_conf             1058999999986369997899999999841599999


No 5  
>>2cqs_A Cellobiose phosphorylase; beta-sandwich, (alpha/alpha)6 barrel, transferase; HET: BGC; 2.00A {Cellvibrio gilvus} PDB: 2cqt_A* (A:525-628)
Probab=11.17  E-value=98  Score=12.15  Aligned_cols=39  Identities=18%  Similarity=-0.045  Sum_probs=28.8

Q ss_pred             CHHHHHHHHHHHHH---HHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             22899999999999---7414988899999999999999997
Q gi|254781138|r  134 APDLYLYGLVEEIA---LWEQKIDKATTASALFQESIKKLQQ  172 (178)
Q Consensus       134 ~pd~~LygaL~eA~---~flk~~~~~~~~~~~y~~ai~~l~~  172 (178)
                      .-++++|.+|..++   ..+.+++.+..|.+..++--+.++.
T Consensus        16 ~~~~~~~~aL~~~a~la~~lG~~~~A~~y~~~a~~lk~ain~   57 (104)
T 2cqs_A           16 FIAAQFVLYGAEYATLAERRGLADVATEARKYVDEVRAAVLE   57 (104)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999829989999999999987899998


No 6  
>>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} (A:42-88,A:278-292)
Probab=9.85  E-value=1.1e+02  Score=11.88  Aligned_cols=19  Identities=5%  Similarity=0.088  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHHHCCC-CCHH
Q ss_conf             899999999874265-0034
Q gi|254781138|r    5 FASLLIDVSHYVEKG-GFTY   23 (178)
Q Consensus         5 Y~~L~~~I~~~l~r~-dlt~   23 (178)
                      .-+|+.+|++|+.|. .+++
T Consensus        27 ~peLReAIA~~y~rryGVt~   46 (62)
T 3jtx_A           27 LPELRQACANWLKRRYDGLT   46 (62)
T ss_dssp             CHHHHHHHHHHHHHHTTTCC
T ss_pred             CHHHHHHHHHHHHHHCCCCC
T ss_conf             99999999999764114875


No 7  
>>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 2.19A {Helicobacter pylori 26695} (A:35-79,A:262-278)
Probab=9.20  E-value=1.2e+02  Score=11.74  Aligned_cols=15  Identities=13%  Similarity=0.091  Sum_probs=12.7

Q ss_pred             HHHHHHHHHHHHCCC
Q ss_conf             899999999874265
Q gi|254781138|r    5 FASLLIDVSHYVEKG   19 (178)
Q Consensus         5 Y~~L~~~I~~~l~r~   19 (178)
                      -.+|+.+|++|++|.
T Consensus        27 ~peLReAIA~~~~rr   41 (62)
T 3ezs_A           27 EESLRAAQRGFFKRR   41 (62)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH
T ss_conf             799999999999998


No 8  
>>2oba_A Probable 6-pyruvoyl tetrahydrobiopterin synthase; tetrahydrobiopterin biosynthesis, PTP synthase, PTPS, lyase; 2.33A {Pseudomonas aeruginosa} (A:)
Probab=9.06  E-value=62  Score=13.28  Aligned_cols=20  Identities=20%  Similarity=0.159  Sum_probs=15.3

Q ss_pred             CCCCHHHHHHHHHHHHCCCC
Q ss_conf             97578999999998742650
Q gi|254781138|r    1 MAKDFASLLIDVSHYVEKGG   20 (178)
Q Consensus         1 Ma~~Y~~L~~~I~~~l~r~d   20 (178)
                      |..+++.||..++..+++=|
T Consensus        68 ~vvDf~~lk~~~~~v~~~lD   87 (138)
T 2oba_A           68 WIRDFAEIKAIFKPIYEQLD   87 (138)
T ss_dssp             SSSCHHHHHHHHHHHHHHHT
T ss_pred             EEEEHHHHHHHHHHHHHHCC
T ss_conf             48549998788987663302


No 9  
>>1wst_A MSAT, multiple substrate aminotransferase; alpha and beta; HET: PLP; 1.95A {Thermococcus profundus} (A:53-102,A:285-304)
Probab=8.76  E-value=1.2e+02  Score=11.63  Aligned_cols=23  Identities=26%  Similarity=0.420  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHHHCCCC---CHHHHHH
Q ss_conf             8999999998742650---0345779
Q gi|254781138|r    5 FASLLIDVSHYVEKGG---FTYLFKN   27 (178)
Q Consensus         5 Y~~L~~~I~~~l~r~d---lt~~I~~   27 (178)
                      +-+|..+|++|+.+++   +|+..-.
T Consensus        33 ~~~LReaIA~yL~~sRgV~~~~~~~~   58 (70)
T 1wst_A           33 FTPLRLALARWMEKRYDILCTNTFGQ   58 (70)
T ss_dssp             CHHHHHHHHHHHHHHHCCSSCCHHHH
T ss_pred             CHHHHHHHHHHHHHHHCCCCCCCCHH
T ss_conf             49999999999999848923343023


No 10 
>>2a6q_A Antitoxin YEFM; YEFM, antitoxin, addiction modules, RNAse, inhibitor, toxin inhibitor/toxin complex; 2.05A {Escherichia coli} (A:1-44)
Probab=8.34  E-value=1.1e+02  Score=11.78  Aligned_cols=17  Identities=12%  Similarity=0.128  Sum_probs=0.0

Q ss_pred             CCCHHHHHHHHHHHHCC
Q ss_conf             75789999999987426
Q gi|254781138|r    2 AKDFASLLIDVSHYVEK   18 (178)
Q Consensus         2 a~~Y~~L~~~I~~~l~r   18 (178)
                      +.+|+++.++.+.++++
T Consensus         6 ~~sys~aR~nL~~~lD~   22 (44)
T 2a6q_A            6 TISYSEARQNLSATMMK   22 (44)
T ss_dssp             EEEHHHHHHTHHHHHHH
T ss_pred             EECHHHHHHHHHHHHHH
T ss_conf             76199999879999999


Done!