Query gi|254781138|ref|YP_003065551.1| hypothetical protein CLIBASIA_05200 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 178 No_of_seqs 113 out of 799 Neff 7.3 Searched_HMMs 33803 Date Wed Jun 1 22:11:33 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781138.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >3fyr_A Sporulation inhibitor 42.9 15 0.00044 16.8 2.0 17 24-40 22-39 (48) 2 >1gd9_A Aspartate aminotransfe 18.9 60 0.0018 13.4 2.0 33 5-37 28-61 (63) 3 >3i4r_B Nuclear pore complex p 16.1 53 0.0016 13.7 0.9 26 140-165 1-26 (65) 4 >3f3f_C Nucleoporin NUP85; str 11.5 95 0.0028 12.2 1.1 35 6-40 104-140 (228) 5 >2cqs_A Cellobiose phosphoryla 11.2 98 0.0029 12.2 5.9 39 134-172 16-57 (104) 6 >3jtx_A Aminotransferase; NP_2 9.9 1.1E+02 0.0032 11.9 1.2 19 5-23 27-46 (62) 7 >3ezs_A Aminotransferase ASPB; 9.2 1.2E+02 0.0034 11.7 1.2 15 5-19 27-41 (62) 8 >2oba_A Probable 6-pyruvoyl te 9.1 62 0.0018 13.3 -0.6 20 1-20 68-87 (138) 9 >1wst_A MSAT, multiple substra 8.8 1.2E+02 0.0036 11.6 1.5 23 5-27 33-58 (70) 10 >2a6q_A Antitoxin YEFM; YEFM, 8.3 1.1E+02 0.0034 11.8 0.5 17 2-18 6-22 (44) No 1 >>3fyr_A Sporulation inhibitor SDA; helical hairpin, histidine kinase inhibitor, sporulation regulation, alternative initiation; 1.97A {Bacillus subtilis} PDB: 1pv0_A 3d36_C* (A:) Probab=42.92 E-value=15 Score=16.77 Aligned_cols=17 Identities=29% Similarity=0.497 Sum_probs=14.0 Q ss_pred HH-HHHHHHHHHHHHHHC Q ss_conf 57-799999999996103 Q gi|254781138|r 24 LF-KNFLHRIEVKINRAL 40 (178) Q Consensus 24 ~I-~~FI~~aE~rI~R~l 40 (178) ++ |+||.+-|.+|.|+- T Consensus 22 ~Ls~dFI~LIe~EI~RRs 39 (48) T 3fyr_A 22 NLNRDFIELIENEIKRRS 39 (48) T ss_dssp TCCHHHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHH T ss_conf 579999999999999973 No 2 >>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence of substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} (A:38-83,A:264-280) Probab=18.89 E-value=60 Score=13.37 Aligned_cols=33 Identities=15% Similarity=0.148 Sum_probs=24.3 Q ss_pred HHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHH Q ss_conf 899999999874265-003457799999999996 Q gi|254781138|r 5 FASLLIDVSHYVEKG-GFTYLFKNFLHRIEVKIN 37 (178) Q Consensus 5 Y~~L~~~I~~~l~r~-dlt~~I~~FI~~aE~rI~ 37 (178) .-+|+.+|++|.+|. .+..---.||+-+-.+-. T Consensus 28 ~peLReAIA~~y~~rygv~~~~~~~~~~~~~~~~ 61 (63) T 1gd9_A 28 LLELREAIAEKLKKQNGIETCPVTFIQYAAAKAL 61 (63) T ss_dssp CHHHHHHHHHHHHHHHCCCCSCCHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH T ss_conf 9999999999999872998210158999999998 No 3 >>3i4r_B Nuclear pore complex protein NUP133; protein transport,structural protein, kinetochore, mRNA transport, nucleus, phosphoprotein, translocation; 3.53A {Homo sapiens} (B:357-421) Probab=16.11 E-value=53 Score=13.66 Aligned_cols=26 Identities=4% Similarity=0.175 Sum_probs=21.1 Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH Q ss_conf 99999999741498889999999999 Q gi|254781138|r 140 YGLVEEIALWEQKIDKATTASALFQE 165 (178) Q Consensus 140 ygaL~eA~~flk~~~~~~~~~~~y~~ 165 (178) +++|++.|.=.+|.+|++.|..+|.+ T Consensus 1 F~sLV~lCe~t~n~~RL~~Y~~kf~e 26 (65) T 3i4r_B 1 FDILVQMCEQTDNQSRLQRYMTQFAD 26 (65) T ss_dssp CHHHHHHHHHHSSCTTHHHHHHHSCS T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHCC T ss_conf 99999999946869999999998264 No 4 >>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleoporin complex, nuclear pore complex, macromolecular assembly; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B (C:99-218,C:387-494) Probab=11.53 E-value=95 Score=12.22 Aligned_cols=35 Identities=14% Similarity=0.226 Sum_probs=16.6 Q ss_pred HHHHHHHHHHHCCCCC-HHHH-HHHHHHHHHHHHHHC Q ss_conf 9999999987426500-3457-799999999996103 Q gi|254781138|r 6 ASLLIDVSHYVEKGGF-TYLF-KNFLHRIEVKINRAL 40 (178) Q Consensus 6 ~~L~~~I~~~l~r~dl-t~~I-~~FI~~aE~rI~R~l 40 (178) +++...+.+|+||+|= |+.- .-|+..-+.+|.+-| T Consensus 104 ~~~i~~li~WvNR~Dget~~wEq~cv~Il~~~~~~vL 140 (228) T 3f3f_C 104 SEFIESLLNWINRSDGETNDWEQPCVDIISGKIHSIL 140 (228) T ss_dssp HHHHHHHHHHHHHHCCCTSSSHHHHHHHHTTCCGGGH T ss_pred CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHH T ss_conf 1058999999986369997899999999841599999 No 5 >>2cqs_A Cellobiose phosphorylase; beta-sandwich, (alpha/alpha)6 barrel, transferase; HET: BGC; 2.00A {Cellvibrio gilvus} PDB: 2cqt_A* (A:525-628) Probab=11.17 E-value=98 Score=12.15 Aligned_cols=39 Identities=18% Similarity=-0.045 Sum_probs=28.8 Q ss_pred CHHHHHHHHHHHHH---HHCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 22899999999999---7414988899999999999999997 Q gi|254781138|r 134 APDLYLYGLVEEIA---LWEQKIDKATTASALFQESIKKLQQ 172 (178) Q Consensus 134 ~pd~~LygaL~eA~---~flk~~~~~~~~~~~y~~ai~~l~~ 172 (178) .-++++|.+|..++ ..+.+++.+..|.+..++--+.++. T Consensus 16 ~~~~~~~~aL~~~a~la~~lG~~~~A~~y~~~a~~lk~ain~ 57 (104) T 2cqs_A 16 FIAAQFVLYGAEYATLAERRGLADVATEARKYVDEVRAAVLE 57 (104) T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999999829989999999999987899998 No 6 >>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} (A:42-88,A:278-292) Probab=9.85 E-value=1.1e+02 Score=11.88 Aligned_cols=19 Identities=5% Similarity=0.088 Sum_probs=14.3 Q ss_pred HHHHHHHHHHHHCCC-CCHH Q ss_conf 899999999874265-0034 Q gi|254781138|r 5 FASLLIDVSHYVEKG-GFTY 23 (178) Q Consensus 5 Y~~L~~~I~~~l~r~-dlt~ 23 (178) .-+|+.+|++|+.|. .+++ T Consensus 27 ~peLReAIA~~y~rryGVt~ 46 (62) T 3jtx_A 27 LPELRQACANWLKRRYDGLT 46 (62) T ss_dssp CHHHHHHHHHHHHHHTTTCC T ss_pred CHHHHHHHHHHHHHHCCCCC T ss_conf 99999999999764114875 No 7 >>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 2.19A {Helicobacter pylori 26695} (A:35-79,A:262-278) Probab=9.20 E-value=1.2e+02 Score=11.74 Aligned_cols=15 Identities=13% Similarity=0.091 Sum_probs=12.7 Q ss_pred HHHHHHHHHHHHCCC Q ss_conf 899999999874265 Q gi|254781138|r 5 FASLLIDVSHYVEKG 19 (178) Q Consensus 5 Y~~L~~~I~~~l~r~ 19 (178) -.+|+.+|++|++|. T Consensus 27 ~peLReAIA~~~~rr 41 (62) T 3ezs_A 27 EESLRAAQRGFFKRR 41 (62) T ss_dssp CHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHH T ss_conf 799999999999998 No 8 >>2oba_A Probable 6-pyruvoyl tetrahydrobiopterin synthase; tetrahydrobiopterin biosynthesis, PTP synthase, PTPS, lyase; 2.33A {Pseudomonas aeruginosa} (A:) Probab=9.06 E-value=62 Score=13.28 Aligned_cols=20 Identities=20% Similarity=0.159 Sum_probs=15.3 Q ss_pred CCCCHHHHHHHHHHHHCCCC Q ss_conf 97578999999998742650 Q gi|254781138|r 1 MAKDFASLLIDVSHYVEKGG 20 (178) Q Consensus 1 Ma~~Y~~L~~~I~~~l~r~d 20 (178) |..+++.||..++..+++=| T Consensus 68 ~vvDf~~lk~~~~~v~~~lD 87 (138) T 2oba_A 68 WIRDFAEIKAIFKPIYEQLD 87 (138) T ss_dssp SSSCHHHHHHHHHHHHHHHT T ss_pred EEEEHHHHHHHHHHHHHHCC T ss_conf 48549998788987663302 No 9 >>1wst_A MSAT, multiple substrate aminotransferase; alpha and beta; HET: PLP; 1.95A {Thermococcus profundus} (A:53-102,A:285-304) Probab=8.76 E-value=1.2e+02 Score=11.63 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=16.2 Q ss_pred HHHHHHHHHHHHCCCC---CHHHHHH Q ss_conf 8999999998742650---0345779 Q gi|254781138|r 5 FASLLIDVSHYVEKGG---FTYLFKN 27 (178) Q Consensus 5 Y~~L~~~I~~~l~r~d---lt~~I~~ 27 (178) +-+|..+|++|+.+++ +|+..-. T Consensus 33 ~~~LReaIA~yL~~sRgV~~~~~~~~ 58 (70) T 1wst_A 33 FTPLRLALARWMEKRYDILCTNTFGQ 58 (70) T ss_dssp CHHHHHHHHHHHHHHHCCSSCCHHHH T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCHH T ss_conf 49999999999999848923343023 No 10 >>2a6q_A Antitoxin YEFM; YEFM, antitoxin, addiction modules, RNAse, inhibitor, toxin inhibitor/toxin complex; 2.05A {Escherichia coli} (A:1-44) Probab=8.34 E-value=1.1e+02 Score=11.78 Aligned_cols=17 Identities=12% Similarity=0.128 Sum_probs=0.0 Q ss_pred CCCHHHHHHHHHHHHCC Q ss_conf 75789999999987426 Q gi|254781138|r 2 AKDFASLLIDVSHYVEK 18 (178) Q Consensus 2 a~~Y~~L~~~I~~~l~r 18 (178) +.+|+++.++.+.++++ T Consensus 6 ~~sys~aR~nL~~~lD~ 22 (44) T 2a6q_A 6 TISYSEARQNLSATMMK 22 (44) T ss_dssp EEEHHHHHHTHHHHHHH T ss_pred EECHHHHHHHHHHHHHH T ss_conf 76199999879999999 Done!