BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254781138|ref|YP_003065551.1| hypothetical protein
CLIBASIA_05200 [Candidatus Liberibacter asiaticus str. psy62]
         (178 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254781138|ref|YP_003065551.1| hypothetical protein CLIBASIA_05200 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040815|gb|ACT57611.1| hypothetical protein CLIBASIA_05200 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 178

 Score =  365 bits (938), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 178/178 (100%), Positives = 178/178 (100%)

Query: 1   MAKDFASLLIDVSHYVEKGGFTYLFKNFLHRIEVKINRALRLREMERKIVLSLVEGSAPL 60
           MAKDFASLLIDVSHYVEKGGFTYLFKNFLHRIEVKINRALRLREMERKIVLSLVEGSAPL
Sbjct: 1   MAKDFASLLIDVSHYVEKGGFTYLFKNFLHRIEVKINRALRLREMERKIVLSLVEGSAPL 60

Query: 61  PDDYIEIRFLEDNKGNKLDHLPLSISLQKNKGYIITADSICVLPISSEDVVLYYYACIPP 120
           PDDYIEIRFLEDNKGNKLDHLPLSISLQKNKGYIITADSICVLPISSEDVVLYYYACIPP
Sbjct: 61  PDDYIEIRFLEDNKGNKLDHLPLSISLQKNKGYIITADSICVLPISSEDVVLYYYACIPP 120

Query: 121 LTENNPVNWLLHRAPDLYLYGLVEEIALWEQKIDKATTASALFQESIKKLQQNDIRSW 178
           LTENNPVNWLLHRAPDLYLYGLVEEIALWEQKIDKATTASALFQESIKKLQQNDIRSW
Sbjct: 121 LTENNPVNWLLHRAPDLYLYGLVEEIALWEQKIDKATTASALFQESIKKLQQNDIRSW 178


>gi|315122531|ref|YP_004063020.1| hypothetical protein CKC_03915 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495933|gb|ADR52532.1| hypothetical protein CKC_03915 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 191

 Score =  313 bits (801), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 149/177 (84%), Positives = 164/177 (92%)

Query: 1   MAKDFASLLIDVSHYVEKGGFTYLFKNFLHRIEVKINRALRLREMERKIVLSLVEGSAPL 60
           MAKD+ASLLIDVSHY EK GFT LFK+FLHRIEVKINR LRLREME+K  LSLVEGS  L
Sbjct: 1   MAKDYASLLIDVSHYTEKSGFTCLFKDFLHRIEVKINRELRLREMEKKAFLSLVEGSVIL 60

Query: 61  PDDYIEIRFLEDNKGNKLDHLPLSISLQKNKGYIITADSICVLPISSEDVVLYYYACIPP 120
           PDD+IE+RFL D++GNKLDHLPLSISLQKNKGYIITADSICV P SSEDVVLYYYACIPP
Sbjct: 61  PDDFIEMRFLTDHQGNKLDHLPLSISLQKNKGYIITADSICVSPPSSEDVVLYYYACIPP 120

Query: 121 LTENNPVNWLLHRAPDLYLYGLVEEIALWEQKIDKATTASALFQESIKKLQQNDIRS 177
           LT+NNP+NWLL R+PDLYLYGL+EE+ALWEQKIDKA+TA ALFQESIK+LQ+NDIRS
Sbjct: 121 LTDNNPINWLLQRSPDLYLYGLIEEVALWEQKIDKASTAGALFQESIKRLQKNDIRS 177


>gi|227822439|ref|YP_002826411.1| hypothetical protein NGR_c18940 [Sinorhizobium fredii NGR234]
 gi|227341440|gb|ACP25658.1| hypothetical protein NGR_c18940 [Sinorhizobium fredii NGR234]
          Length = 198

 Score =  143 bits (361), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 76/180 (42%), Positives = 103/180 (57%), Gaps = 6/180 (3%)

Query: 3   KDFASLLIDVSHYVEKGGFTYLFKNFLHRIEVKINRALRLREMERKIVLSLVEGSAPLPD 62
            D+ASLL+D   Y  +   T+LF  FL   E+K+NR +R+ +MER + + L +G   L  
Sbjct: 4   SDYASLLVDAGDYSGRDDVTHLFPRFLALAELKLNRVMRVADMERMVTVPLTDGEGSLSA 63

Query: 63  DYIEIRFLEDNKGNKLDHLPL------SISLQKNKGYIITADSICVLPISSEDVVLYYYA 116
           D++E R +    G  L  LPL      + S     GY I   +I V P  +ED+ L YYA
Sbjct: 64  DFLEARQVLAADGRVLRALPLQELGRHATSGGGPIGYAIVGSAIQVRPKGAEDIRLTYYA 123

Query: 117 CIPPLTENNPVNWLLHRAPDLYLYGLVEEIALWEQKIDKATTASALFQESIKKLQQNDIR 176
            IPPLT   P NWL+ RAPD+YLY LVEEIA+WE+   KA  A AL ++++  L   D R
Sbjct: 124 KIPPLTAVAPSNWLIERAPDVYLYALVEEIAIWERDAGKAGAAEALKRQAMAGLGLADER 183


>gi|150397025|ref|YP_001327492.1| hypothetical protein Smed_1822 [Sinorhizobium medicae WSM419]
 gi|150028540|gb|ABR60657.1| hypothetical protein Smed_1822 [Sinorhizobium medicae WSM419]
          Length = 200

 Score =  127 bits (320), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 67/183 (36%), Positives = 96/183 (52%), Gaps = 8/183 (4%)

Query: 3   KDFASLLIDVSHYVEKGGFTYLFKNFLHRIEVKINRALRLREMERKIVLSLVEGSAPLPD 62
            D+ SLL+D   Y  +    + F  FL   E+K+NR LR+ +ME    + L +G   LP 
Sbjct: 4   SDYGSLLVDAGEYSGREDIAHNFPRFLGLAELKLNRGLRVADMEVTAAIPLADGDGTLPA 63

Query: 63  DYIEIRFLEDNKGNKLDHLPLSISLQKNK--------GYIITADSICVLPISSEDVVLYY 114
           D++E R +    G  +  +PL       +        GY I    I V  +S + + + Y
Sbjct: 64  DFLEAREVRSGAGVSIRAVPLQQLTNGYRDRNGVQPAGYSIVGRRIKVRSVSDQGLTITY 123

Query: 115 YACIPPLTENNPVNWLLHRAPDLYLYGLVEEIALWEQKIDKATTASALFQESIKKLQQND 174
           YA IP LT +NP NWLL +APD+YL+ LV EIA+W + +D AT A  L   +I  L+  D
Sbjct: 124 YARIPALTPSNPTNWLLEKAPDVYLFALVNEIAIWGKDVDGATAAQQLMMLAISGLRIED 183

Query: 175 IRS 177
            RS
Sbjct: 184 ERS 186


>gi|170752055|ref|YP_001758315.1| hypothetical protein Mrad2831_5687 [Methylobacterium radiotolerans
           JCM 2831]
 gi|170658577|gb|ACB27632.1| conserved hypothetical protein [Methylobacterium radiotolerans JCM
           2831]
          Length = 217

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 73/166 (43%), Gaps = 22/166 (13%)

Query: 4   DFASLLIDVSHYVEKGGFTYLFKNFLHRIEVKINRALRLREMERKIVLSLVEGSA---PL 60
           D ASL   V  Y+ +         F+   E   N  LR REME +  L          PL
Sbjct: 7   DLASLRAAVLDYIARPDLADAVPGFIALAESHFNAILRAREMEAEASLGTAAAPVAVMPL 66

Query: 61  PDDYIE--------------IRFLE-DNKGNKLDHLPLSISLQKNKGYIITADSICVLPI 105
           P D+IE                F E D+   +  H P        + + I A ++ ++P 
Sbjct: 67  PADFIEWLAVSWAGSGRTARPTFAEADSPEARFRHRPGG----DPQYFAIRAGNVRMVPE 122

Query: 106 SSEDVVLYYYACIPPLTENNPVNWLLHRAPDLYLYGLVEEIALWEQ 151
               V L YYA IPPLT+  P NWLL +APD YLY ++ E  L+++
Sbjct: 123 KPGAVTLAYYAAIPPLTDAAPSNWLLAKAPDAYLYAVLAEAYLFQK 168


>gi|148257049|ref|YP_001241634.1| hypothetical protein BBta_5781 [Bradyrhizobium sp. BTAi1]
 gi|146409222|gb|ABQ37728.1| hypothetical protein BBta_5781 [Bradyrhizobium sp. BTAi1]
          Length = 217

 Score = 61.6 bits (148), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 89/191 (46%), Gaps = 24/191 (12%)

Query: 3   KDFASLLIDVSHYVEKGGFTYLFK---NFLHRIEVKINRALRLREMERKIVLSLVEGSA- 58
            +++SL   VS Y+ +   T L     +F+   E K+NR L +R+MER+ +  +  GSA 
Sbjct: 5   SNYSSLQSAVSEYLARDQDTTLVSRIPSFIQLAEAKLNRQLFVRQMERRAIAVVDLGSAE 64

Query: 59  ----PLPDDYIEIRF-----------LEDNKGNKLDHLPLSIS--LQKNKGYIITADSIC 101
                LP D+  +R            LE   G +LD     I     + + + +  D I 
Sbjct: 65  PNFIALPSDFQSMRRIRLTSVRGQPPLEFKSGVQLDEYRSRICNVAGQPRYFSLFGDQIE 124

Query: 102 VLPI--SSEDVVLYYYACIPPLTENNPVNWLLHRAPDLYLYGLVEEIALWEQKIDKATTA 159
           + P   ++  + + Y   IPPL  N+  NWLL  APDLYLYG + E A + ++  +  T 
Sbjct: 125 LAPRPDAAYTIEMVYRRTIPPLASND-SNWLLMLAPDLYLYGALLESAPYLKEDGRIQTW 183

Query: 160 SALFQESIKKL 170
              F  ++  L
Sbjct: 184 GLGFSTALADL 194


>gi|307308930|ref|ZP_07588613.1| hypothetical protein SinmeBDRAFT_4497 [Sinorhizobium meliloti
           BL225C]
 gi|306900564|gb|EFN31177.1| hypothetical protein SinmeBDRAFT_4497 [Sinorhizobium meliloti
           BL225C]
          Length = 191

 Score = 57.8 bits (138), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 71/138 (51%), Gaps = 10/138 (7%)

Query: 46  ERKIVLSLVEGSAPLPDDYIEIRFLEDNKGNKLDHL-PLSISLQKNK-GYIITADSICVL 103
           E+ + LS+V+ +A LP D+IE+R +  + G     + P   +L  ++ GY ++ +++  +
Sbjct: 44  EKTVTLSVVDNTAVLPSDFIELRSITGSNGYVYKPVNPAQATLYADEVGYYLSGNTLVFV 103

Query: 104 P--ISSEDVVLYYYA--CIPPLTENNPVNWLLHRAPDLYLYGLVEEIALWEQKIDKATTA 159
              + SE  +LY+ A   + P   N    WL  R P +Y+  +++E   WE+  +     
Sbjct: 104 GNYVESEVTILYWSAFEGLSPTQSN----WLFDRFPTVYVAAVMKEFYRWEKDAEGVAIE 159

Query: 160 SALFQESIKKLQQNDIRS 177
            A  QE + ++ ++D R 
Sbjct: 160 QATLQELLGRVAEDDRRG 177


>gi|160897393|ref|YP_001562975.1| constituent protein [Delftia acidovorans SPH-1]
 gi|160362977|gb|ABX34590.1| constituent protein [Delftia acidovorans SPH-1]
          Length = 205

 Score = 57.8 bits (138), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 83/184 (45%), Gaps = 14/184 (7%)

Query: 5   FASLLIDVSHYVEKGGFTYLFKNFLHRIEVKINRALRLREMERKIVLSLVEG--SAPLPD 62
           +A L   ++ ++++   T    +F+   E +I R LRLR+   K+ L    G     LPD
Sbjct: 6   YAGLQASIARWLKRSDLTANIPDFISLAEGRIARDLRLRKQITKVTLVTTGGVQGVDLPD 65

Query: 63  DYIEIR--FLEDNKGNKLDHLPLSISLQKNKG--------YIITADSICVLPISSE--DV 110
           +Y+E     L+  +  +L  +P+     K           Y +  + + + P+     ++
Sbjct: 66  NYLEAENITLDGGEPRQLTFVPIEHLDTKYPANYTAMPGVYTLLGNQLLLGPVPDGVYNI 125

Query: 111 VLYYYACIPPLTENNPVNWLLHRAPDLYLYGLVEEIALWEQKIDKATTASALFQESIKKL 170
            + YYA   PL++ N  NWLL   P +YL+  + E  L+    ++A   ++   + I  L
Sbjct: 126 DVTYYARFVPLSDVNTTNWLLQNHPSIYLFSALAEAELFLVNDERAVLWASKATQEIGTL 185

Query: 171 QQND 174
           Q  D
Sbjct: 186 QSVD 189


>gi|27476047|ref|NP_775249.1| constituent protein [Pseudomonas phage PaP3]
 gi|27414477|gb|AAL85563.1| ORF.09 [Pseudomonas phage PaP3]
          Length = 208

 Score = 54.3 bits (129), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 68/153 (44%), Gaps = 24/153 (15%)

Query: 28  FLHRIEVKINRALRLREMERKIVLSLVEGSAPLPDDYIEIRFLEDNK---GNKLDHLPLS 84
           F+     ++NR LR+RE E    L    G   +P+ ++ +R +  +    G  L ++   
Sbjct: 31  FIGNTTDRLNRLLRVRENEHFETLMAFGGGIEIPEHFVALRSITGDALIGGRTLQYITQD 90

Query: 85  I---------SLQKNKGYIITADSICVLPISSEDV--VLYYYACIPPLTENNPVNWLLHR 133
           I           Q    Y    +   V P+  +    ++ Y+  +P L+ +NP  W L +
Sbjct: 91  IFSHYVNYNYQPQGVTYYTRLGNFWRVYPVVPDGAPFIVNYWTVLPELSLDNPTTWALTK 150

Query: 134 APDLYLYGLVEEIAL----------WEQKIDKA 156
            P +YLYG++E+I L          W QK+++A
Sbjct: 151 YPQIYLYGVLEQIYLYTMDEERSMFWGQKLERA 183


>gi|167600433|ref|YP_001671933.1| phage particle protein [Pseudomonas phage LUZ24]
 gi|161168296|emb|CAP45461.1| phage particle protein [Pseudomonas phage LUZ24]
          Length = 208

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 67/153 (43%), Gaps = 24/153 (15%)

Query: 28  FLHRIEVKINRALRLREMERKIVLSLVEGSAPLPDDYIEIRFLEDNK---GNKLDHLP-- 82
           F+     ++NR LR+RE E    L    G   +P+ ++ +R +  +    G  L ++   
Sbjct: 31  FIGNTTDRLNRLLRVRENEHFETLMAFGGGIEIPEHFVALRSITGDSLIGGRTLQYITQD 90

Query: 83  -------LSISLQKNKGYIITADSICVLPISSEDV--VLYYYACIPPLTENNPVNWLLHR 133
                   +   Q    Y    +   V P+  +    ++ Y+  +P L+  NP  W L +
Sbjct: 91  TFTHYVNYNYQPQGVTYYTRLGNFWRVFPVVPDGAPFIVNYWTVLPELSLANPTTWALTK 150

Query: 134 APDLYLYGLVEEIAL----------WEQKIDKA 156
            P +YLYG++E+I L          W QK+++A
Sbjct: 151 YPQIYLYGVLEQIYLYTMDEARSQFWGQKLERA 183


>gi|241760941|ref|ZP_04759030.1| constituent protein [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|241374560|gb|EER64021.1| constituent protein [Zymomonas mobilis subsp. mobilis ATCC 10988]
          Length = 219

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 14/183 (7%)

Query: 5   FASLLIDVSHYVEKGGFTYLFKNFLHRIEVKINRALRLREMERKIVLSLVEGSAP--LPD 62
           +  LL  ++ ++E+         F+   E +  R L   E+E +I    V    P  LPD
Sbjct: 16  YDGLLKAIALWLERDDLADEIPYFVQLAEARFRRLLTNPELETEIT---VAAGCPVALPD 72

Query: 63  DYIEIRFLEDNKGNK---LDHLPLSISLQ---KNKG-YIITADSICVLPISSEDVV--LY 113
           D+  +R L    G +      LP  +  Q   +NK  + + A  + + P+   +    L 
Sbjct: 73  DFEALRLLYPAGGRRDRAFLQLPPDVFQQGKHQNKSVFTLIAGQLWISPLPETETAFSLV 132

Query: 114 YYACIPPLTENNPVNWLLHRAPDLYLYGLVEEIALWEQKIDKATTASALFQESIKKLQQN 173
           Y A +P L+ N   NWLL   PD+YL+G + +   +     +     +   E++ +L + 
Sbjct: 133 YRAALPSLSLNRQSNWLLTSHPDIYLFGSLLQAEFFGWNDSRLPVIKSALDEALGELNKA 192

Query: 174 DIR 176
            +R
Sbjct: 193 GLR 195


>gi|260753093|ref|YP_003225986.1| constituent protein [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|258552456|gb|ACV75402.1| constituent protein [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 219

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 79/184 (42%), Gaps = 16/184 (8%)

Query: 5   FASLLIDVSHYVEKGGFTYLFKNFLHRIEVKINRALRLREMERKIVLSLVEGSAP--LPD 62
           +  LL  ++ ++E+         F+   E +  R L   E+E +I    V    P  LPD
Sbjct: 16  YDGLLKAIALWLERDDLADEIPYFVQLAEARFRRLLTNPELETEIT---VAAGCPVALPD 72

Query: 63  DYIEIRFLEDNKGNKLDHLPLSIS---LQKNKG-----YIITADSICVLPISSEDVV--L 112
           D+  +R L    G + D   L +S    Q+ K      + + A  + + P+   +    L
Sbjct: 73  DFETLRLLYPAGGRR-DRAFLQLSPDVFQQGKHQNKSVFTLMAGQLWISPLPETETAFSL 131

Query: 113 YYYACIPPLTENNPVNWLLHRAPDLYLYGLVEEIALWEQKIDKATTASALFQESIKKLQQ 172
            Y A +P L+ N   NWLL   PD+YL+G + +   +     +     +   E++ +L +
Sbjct: 132 VYRAALPSLSLNRQSNWLLASHPDIYLFGSLLQAEFFGWNDSRLPVIKSALDEALGELNK 191

Query: 173 NDIR 176
             +R
Sbjct: 192 AGLR 195


>gi|56551285|ref|YP_162124.1| hypothetical protein ZMO0389 [Zymomonas mobilis subsp. mobilis ZM4]
 gi|56542859|gb|AAV89013.1| constituent protein [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 219

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 79/184 (42%), Gaps = 16/184 (8%)

Query: 5   FASLLIDVSHYVEKGGFTYLFKNFLHRIEVKINRALRLREMERKIVLSLVEGSAP--LPD 62
           +  LL  ++ ++E+         F+   E +  R L   E+E +I    V    P  LPD
Sbjct: 16  YDGLLKAIALWLERDDLADEIPYFVQLAEARFRRLLTNPELETEIT---VAAGCPVTLPD 72

Query: 63  DYIEIRFLEDNKGNKLDHLPLSIS---LQKNKG-----YIITADSICVLPISSEDVV--L 112
           D+  +R L    G + D   L +S    Q+ K      + + A  + + P+   +    L
Sbjct: 73  DFEALRLLYPAGGRR-DRAFLQLSPDVFQQGKHQNKSVFTLMAGQLWISPLPETETAFSL 131

Query: 113 YYYACIPPLTENNPVNWLLHRAPDLYLYGLVEEIALWEQKIDKATTASALFQESIKKLQQ 172
            Y A +P L+ N   NWLL   PD+YL+G + +   +     +     +   E++ +L +
Sbjct: 132 VYRAALPSLSLNRQSNWLLASHPDIYLFGSLLQAEFFGWNDSRLPVIKSALDEALGELNK 191

Query: 173 NDIR 176
             +R
Sbjct: 192 AGLR 195


>gi|221199515|ref|ZP_03572559.1| conserved hypothetical protein [Burkholderia multivorans CGD2M]
 gi|221205584|ref|ZP_03578599.1| conserved hypothetical protein [Burkholderia multivorans CGD2]
 gi|221174422|gb|EEE06854.1| conserved hypothetical protein [Burkholderia multivorans CGD2]
 gi|221180800|gb|EEE13203.1| conserved hypothetical protein [Burkholderia multivorans CGD2M]
          Length = 198

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 1/67 (1%)

Query: 92  GYIITADSICVLPISSEDVV-LYYYACIPPLTENNPVNWLLHRAPDLYLYGLVEEIALWE 150
           G+ I  D++         V+ + YY  I PL++ N  NWLL  APD+YL+G + E A++ 
Sbjct: 100 GFQINGDTLAFGADQLGQVLRIDYYTVIEPLSDTNESNWLLEDAPDIYLFGALHEAAMYV 159

Query: 151 QKIDKAT 157
           +   +AT
Sbjct: 160 RDDARAT 166


>gi|291334401|gb|ADD94057.1| hypothetical protein BBta_5781 [uncultured phage MedDCM-OCT-S01-C1]
          Length = 217

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 2/93 (2%)

Query: 88  QKNKGYIITADSICVLPISSEDVV-LYYYACIPPLTENNPVNWLLHRAPDLYLYGLVEEI 146
           ++ + Y + A+ I V P +  D++ + Y+  +P LT +   NWL  + PD Y++GL  EI
Sbjct: 111 ERQRYYTVIANQIQVAPPTDNDMLEIVYFQRVPALTTDTDTNWLSEKHPDCYIFGLCAEI 170

Query: 147 ALWEQKIDKATTASALFQESIKKLQQND-IRSW 178
           + + +           F ES+  +  +D I  W
Sbjct: 171 SAFAKDAMGFELYKMRFNESLGDIAMDDQITRW 203


>gi|167583568|ref|YP_001671758.1| conserved hypothetical protein [Enterobacteria phage phiEco32]
 gi|164375406|gb|ABY52814.1| conserved hypothetical protein [Enterobacteria phage phiEco32]
          Length = 250

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 73/174 (41%), Gaps = 32/174 (18%)

Query: 21  FTYLFKNFLHRIEVKINRALRLREMERKIVLSLVEGSAPLPDDYIEIRFLEDNKGNKLDH 80
           F     NF++  E +I R LR+  +E+++ L + +G A +P DY+E +++   K   +  
Sbjct: 31  FVNQIPNFINFAEKEIYRNLRIPPLEKEVYLDIKDGVAYIPPDYLEAQWMMRAKDGTIFQ 90

Query: 81  L--PLSISLQKNKGYI------------------------ITADSI------CVLPISSE 108
           +  P  IS ++  G I                        I AD+         L  +  
Sbjct: 91  VTSPEEISYRRQHGTINPSHWNNQPVNFARFGSRFIFYPSIEADTPYYPDDGSPLIPAEN 150

Query: 109 DVVLYYYACIPPLTENNPVNWLLHRAPDLYLYGLVEEIALWEQKIDKATTASAL 162
            V+L YYA  P   E+   + +L  AP+L LY  +    L+ Q  +     SAL
Sbjct: 151 SVILSYYADPPEFHEDTDTSAILTIAPELLLYFTLRHACLFVQDDNGVQKWSAL 204


>gi|291334590|gb|ADD94240.1| hypothetical protein [uncultured phage MedDCM-OCT-S04-C136]
          Length = 135

 Score = 42.4 bits (98), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 4/101 (3%)

Query: 78  LDHLPLSISLQKNKGYIITADSICVLPI--SSEDVVLYYYACIPPLTENNPVNWLLHRAP 135
           +D +  S +      Y I  DS    PI  S+    L YYA    L++ N  N++L   P
Sbjct: 1   MDQIKGSSTTGMPSAYTILGDSFRFAPIPDSAYTGTLNYYAKFAALSDTNTSNYILASHP 60

Query: 136 DLYLYGLVEEIALWEQKID--KATTASALFQESIKKLQQND 174
            +YLYG +   A +   +D  +      ++  ++++L++ND
Sbjct: 61  AIYLYGSLYHAANFLGGVDPQRLQQWQGMYTTAMERLERND 101


>gi|291337048|gb|ADD96568.1| constituent protein [uncultured organism MedDCM-OCT-S11-C359]
          Length = 179

 Score = 38.1 bits (87), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 12/105 (11%)

Query: 74  KGNKLDHLPLSISLQKNKGYIITADSICVLPI--SSEDVVLYYYACIPPLTENNPVNWLL 131
           KG+    +P++        Y I  D+    P   S+    L YY     L+++N  N++L
Sbjct: 50  KGSSTSGMPVA--------YTIIGDNFRFAPTPDSTYTGTLNYYKSFDALSDSNTTNYIL 101

Query: 132 HRAPDLYLYGLVEEIALWEQKIDKATTA--SALFQESIKKLQQND 174
              P +YLYG +   A +   ++ A       ++  ++++L++ND
Sbjct: 102 TNHPAIYLYGSLYHAANFLGGVEPARLQQWQGMYTTALERLERND 146


>gi|291334634|gb|ADD94282.1| constituent protein [uncultured phage MedDCM-OCT-S04-C64]
          Length = 216

 Score = 37.4 bits (85), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 74/160 (46%), Gaps = 26/160 (16%)

Query: 4   DFASLLIDVSHYVEKGGFTY--------LFKNFLHRIEVKINR----ALRLREMERKIVL 51
           +++ L   +S++  +  FT         L + +L R+ V +       +R  +++RK   
Sbjct: 5   NYSDLKNAISNWTARSDFTTSNLNDFIDLAERYLKRVPVPVEAPEIGGIR-GDIQRK-TG 62

Query: 52  SLVEGSA--PLPDDYIEI-RF-LEDNKGNKLDHL-PLSISLQKNKG-----YIITADSIC 101
           +LV G+A   LP D+ EI RF L  +    L  L P  +SL    G     +   +D I 
Sbjct: 63  TLVAGTATLALPTDFQEIYRFTLTADTFTTLRFLAPNQLSLNHRSGSGKPAFFTISDVIE 122

Query: 102 --VLPISSEDVVLYYYACIPPLTENNPVNWLLHRAPDLYL 139
             V P S+    L YY  +  L+++N  NW++   PD YL
Sbjct: 123 FEVAPDSNYAYELSYYPMVTGLSDSNTTNWIIENYPDAYL 162


>gi|291334843|gb|ADD94483.1| hypothetical protein [uncultured phage MedDCM-OCT-S06-C1041]
          Length = 179

 Score = 36.6 bits (83), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 53/108 (49%), Gaps = 13/108 (12%)

Query: 44  EMERKIVLSLVEGSA--PLPDDYIEI-RF-LEDNKGNKLDHL-PLSISLQKNKG-----Y 93
           +++RK   +LV G+A   LP D+ EI RF L  +    L  L P  +SL    G     +
Sbjct: 19  DIQRK-TGTLVAGTATLALPTDFQEIYRFTLTADTFTTLRFLAPNQLSLNHRSGSGKPAF 77

Query: 94  IITADSIC--VLPISSEDVVLYYYACIPPLTENNPVNWLLHRAPDLYL 139
              +D I   V P S+    L YY  +  L+++N  NW++   PD YL
Sbjct: 78  FTISDVIEFEVAPDSNYAYELSYYPMVTGLSDSNTTNWIIENYPDAYL 125


>gi|83764465|dbj|BAE54609.1| unnamed protein product [Aspergillus oryzae]
          Length = 695

 Score = 36.6 bits (83), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 23/43 (53%)

Query: 92  GYIITADSICVLPISSEDVVLYYYACIPPLTENNPVNWLLHRA 134
           GYI T ++   L I+ +  V+YYY C+P    N    + LHR 
Sbjct: 257 GYICTGEAYVFLHIADDPTVVYYYLCVPNRDVNPEDKYHLHRT 299


>gi|317138817|ref|XP_001816611.2| hypothetical protein AOR_1_1268184 [Aspergillus oryzae RIB40]
          Length = 450

 Score = 36.2 bits (82), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 23/43 (53%)

Query: 92  GYIITADSICVLPISSEDVVLYYYACIPPLTENNPVNWLLHRA 134
           GYI T ++   L I+ +  V+YYY C+P    N    + LHR 
Sbjct: 257 GYICTGEAYVFLHIADDPTVVYYYLCVPNRDVNPEDKYHLHRT 299


>gi|238504500|ref|XP_002383481.1| conserved hypothetical protein [Aspergillus flavus NRRL3357]
 gi|220690952|gb|EED47301.1| conserved hypothetical protein [Aspergillus flavus NRRL3357]
          Length = 551

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 23/43 (53%)

Query: 92  GYIITADSICVLPISSEDVVLYYYACIPPLTENNPVNWLLHRA 134
           GYI T ++   L I+ +  V+YYY C+P    N    + LHR 
Sbjct: 113 GYICTGEAYVFLHIADDPTVVYYYLCVPNRDVNPEDKYHLHRT 155


>gi|224081162|ref|XP_002306315.1| predicted protein [Populus trichocarpa]
 gi|222855764|gb|EEE93311.1| predicted protein [Populus trichocarpa]
          Length = 278

 Score = 35.0 bits (79), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 7/74 (9%)

Query: 15  YVEKGGFTYLFKNFLHRIEV-KINRALRLREMERKIVLSLVEGSAPLPDDYIEIRFLEDN 73
           YV KG  T L+KN  H+I   K     +  +  + I L L   S PLPDD +E   ++D 
Sbjct: 165 YVNKGDATLLYKN--HKIGTGKFPEVDQDADSSKSIELGLSGSSGPLPDD-VETS-IQDK 220

Query: 74  KGNKLDHLPLSISL 87
           +G K  H+ LSI +
Sbjct: 221 RGKK--HVSLSIRM 232


>gi|291532915|emb|CBL06028.1| Predicted RNA-binding protein homologous to eukaryotic snRNP
           [Megamonas hypermegale ART12/1]
          Length = 242

 Score = 34.7 bits (78), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 51  LSLVEGSAPLPDDYIEIRFLEDNKGNKLDHLPLSISLQKNKGYIITADSICVLPISSEDV 110
            S   GS+ +P DY+E R+L+   G K    P  +    NK   +T D   ++PI ++D+
Sbjct: 186 FSKARGSSKIPVDYVECRYLKKPSGAK----PGFVIFTNNKTLYVTPDEDEIMPIINKDL 241


>gi|327480328|gb|AEA83638.1| oligopeptidase [Pseudomonas stutzeri DSM 4166]
          Length = 676

 Score = 34.3 bits (77), Expect = 7.0,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 122 TENNPVNWLLHR-APDLYLYGLVEEIALWEQKIDKATTASALFQESIKKLQQNDI 175
           T  +P  WL +R A D+  Y   E   L EQ  D+A    ALFQE   ++++ D+
Sbjct: 11  TGTDPYRWLENRDAEDVLAYLKAENAYLEEQLADQAELREALFQEIKSRIRETDL 65


>gi|159109251|ref|XP_001704891.1| Kinase, NEK-frag [Giardia lamblia ATCC 50803]
 gi|157432966|gb|EDO77217.1| Kinase, NEK-frag [Giardia lamblia ATCC 50803]
          Length = 778

 Score = 34.3 bits (77), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 9/81 (11%)

Query: 68  RFLEDNKGNKLDHLPLSISLQKNKGYIITADS----IC---VLPISSEDVVLYYYACIPP 120
           R   D+    +D  P SIS+ ++  Y+++  S    IC   V PIS+ D +L++Y     
Sbjct: 140 RLKNDSPPVHMDIRPSSISVTRDGNYLLSVFSPNKFICQPSVEPISAHDYILFHYGPAED 199

Query: 121 LTENNPVNWLLHRAPDLYLYG 141
           + EN      ++ AP+ +L G
Sbjct: 200 IKEN--AQQAIYTAPEWFLTG 218


Searching..................................................done


Results from round 2




>gi|315122531|ref|YP_004063020.1| hypothetical protein CKC_03915 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495933|gb|ADR52532.1| hypothetical protein CKC_03915 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 191

 Score =  247 bits (631), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 149/177 (84%), Positives = 164/177 (92%)

Query: 1   MAKDFASLLIDVSHYVEKGGFTYLFKNFLHRIEVKINRALRLREMERKIVLSLVEGSAPL 60
           MAKD+ASLLIDVSHY EK GFT LFK+FLHRIEVKINR LRLREME+K  LSLVEGS  L
Sbjct: 1   MAKDYASLLIDVSHYTEKSGFTCLFKDFLHRIEVKINRELRLREMEKKAFLSLVEGSVIL 60

Query: 61  PDDYIEIRFLEDNKGNKLDHLPLSISLQKNKGYIITADSICVLPISSEDVVLYYYACIPP 120
           PDD+IE+RFL D++GNKLDHLPLSISLQKNKGYIITADSICV P SSEDVVLYYYACIPP
Sbjct: 61  PDDFIEMRFLTDHQGNKLDHLPLSISLQKNKGYIITADSICVSPPSSEDVVLYYYACIPP 120

Query: 121 LTENNPVNWLLHRAPDLYLYGLVEEIALWEQKIDKATTASALFQESIKKLQQNDIRS 177
           LT+NNP+NWLL R+PDLYLYGL+EE+ALWEQKIDKA+TA ALFQESIK+LQ+NDIRS
Sbjct: 121 LTDNNPINWLLQRSPDLYLYGLIEEVALWEQKIDKASTAGALFQESIKRLQKNDIRS 177


>gi|254781138|ref|YP_003065551.1| hypothetical protein CLIBASIA_05200 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040815|gb|ACT57611.1| hypothetical protein CLIBASIA_05200 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 178

 Score =  246 bits (628), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 178/178 (100%), Positives = 178/178 (100%)

Query: 1   MAKDFASLLIDVSHYVEKGGFTYLFKNFLHRIEVKINRALRLREMERKIVLSLVEGSAPL 60
           MAKDFASLLIDVSHYVEKGGFTYLFKNFLHRIEVKINRALRLREMERKIVLSLVEGSAPL
Sbjct: 1   MAKDFASLLIDVSHYVEKGGFTYLFKNFLHRIEVKINRALRLREMERKIVLSLVEGSAPL 60

Query: 61  PDDYIEIRFLEDNKGNKLDHLPLSISLQKNKGYIITADSICVLPISSEDVVLYYYACIPP 120
           PDDYIEIRFLEDNKGNKLDHLPLSISLQKNKGYIITADSICVLPISSEDVVLYYYACIPP
Sbjct: 61  PDDYIEIRFLEDNKGNKLDHLPLSISLQKNKGYIITADSICVLPISSEDVVLYYYACIPP 120

Query: 121 LTENNPVNWLLHRAPDLYLYGLVEEIALWEQKIDKATTASALFQESIKKLQQNDIRSW 178
           LTENNPVNWLLHRAPDLYLYGLVEEIALWEQKIDKATTASALFQESIKKLQQNDIRSW
Sbjct: 121 LTENNPVNWLLHRAPDLYLYGLVEEIALWEQKIDKATTASALFQESIKKLQQNDIRSW 178


>gi|150397025|ref|YP_001327492.1| hypothetical protein Smed_1822 [Sinorhizobium medicae WSM419]
 gi|150028540|gb|ABR60657.1| hypothetical protein Smed_1822 [Sinorhizobium medicae WSM419]
          Length = 200

 Score =  207 bits (527), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 67/183 (36%), Positives = 96/183 (52%), Gaps = 8/183 (4%)

Query: 3   KDFASLLIDVSHYVEKGGFTYLFKNFLHRIEVKINRALRLREMERKIVLSLVEGSAPLPD 62
            D+ SLL+D   Y  +    + F  FL   E+K+NR LR+ +ME    + L +G   LP 
Sbjct: 4   SDYGSLLVDAGEYSGREDIAHNFPRFLGLAELKLNRGLRVADMEVTAAIPLADGDGTLPA 63

Query: 63  DYIEIRFLEDNKGNKLDHLPLSISLQKNK--------GYIITADSICVLPISSEDVVLYY 114
           D++E R +    G  +  +PL       +        GY I    I V  +S + + + Y
Sbjct: 64  DFLEAREVRSGAGVSIRAVPLQQLTNGYRDRNGVQPAGYSIVGRRIKVRSVSDQGLTITY 123

Query: 115 YACIPPLTENNPVNWLLHRAPDLYLYGLVEEIALWEQKIDKATTASALFQESIKKLQQND 174
           YA IP LT +NP NWLL +APD+YL+ LV EIA+W + +D AT A  L   +I  L+  D
Sbjct: 124 YARIPALTPSNPTNWLLEKAPDVYLFALVNEIAIWGKDVDGATAAQQLMMLAISGLRIED 183

Query: 175 IRS 177
            RS
Sbjct: 184 ERS 186


>gi|227822439|ref|YP_002826411.1| hypothetical protein NGR_c18940 [Sinorhizobium fredii NGR234]
 gi|227341440|gb|ACP25658.1| hypothetical protein NGR_c18940 [Sinorhizobium fredii NGR234]
          Length = 198

 Score =  204 bits (518), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 77/183 (42%), Positives = 103/183 (56%), Gaps = 7/183 (3%)

Query: 3   KDFASLLIDVSHYVEKGGFTYLFKNFLHRIEVKINRALRLREMERKIVLSLVEGSAPLPD 62
            D+ASLL+D   Y  +   T+LF  FL   E+K+NR +R+ +MER + + L +G   L  
Sbjct: 4   SDYASLLVDAGDYSGRDDVTHLFPRFLALAELKLNRVMRVADMERMVTVPLTDGEGSLSA 63

Query: 63  DYIEIRFLEDNKGNKLDHLPLS------ISLQKNKGYIITADSICVLPISSEDVVLYYYA 116
           D++E R +    G  L  LPL        S     GY I   +I V P  +ED+ L YYA
Sbjct: 64  DFLEARQVLAADGRVLRALPLQELGRHATSGGGPIGYAIVGSAIQVRPKGAEDIRLTYYA 123

Query: 117 CIPPLTENNPVNWLLHRAPDLYLYGLVEEIALWEQKIDKATTASALFQESIKKLQQNDIR 176
            IPPLT   P NWL+ RAPD+YLY LVEEIA+WE+   KA  A AL ++++  L   D R
Sbjct: 124 KIPPLTAVAPSNWLIERAPDVYLYALVEEIAIWERDAGKAGAAEALKRQAMAGLGLADER 183

Query: 177 -SW 178
             W
Sbjct: 184 LRW 186


>gi|241760941|ref|ZP_04759030.1| constituent protein [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|241374560|gb|EER64021.1| constituent protein [Zymomonas mobilis subsp. mobilis ATCC 10988]
          Length = 219

 Score =  179 bits (455), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 40/182 (21%), Positives = 75/182 (41%), Gaps = 10/182 (5%)

Query: 5   FASLLIDVSHYVEKGGFTYLFKNFLHRIEVKINRALRLREMERKIVLSLVEGSAPLPDDY 64
           +  LL  ++ ++E+         F+   E +  R L   E+E +I +        LPDD+
Sbjct: 16  YDGLLKAIALWLERDDLADEIPYFVQLAEARFRRLLTNPELETEITV-AAGCPVALPDDF 74

Query: 65  IEIRFLEDNKGNK---LDHLPLSISLQKNKG----YIITADSICVLPISSEDVV--LYYY 115
             +R L    G +      LP  +  Q        + + A  + + P+   +    L Y 
Sbjct: 75  EALRLLYPAGGRRDRAFLQLPPDVFQQGKHQNKSVFTLIAGQLWISPLPETETAFSLVYR 134

Query: 116 ACIPPLTENNPVNWLLHRAPDLYLYGLVEEIALWEQKIDKATTASALFQESIKKLQQNDI 175
           A +P L+ N   NWLL   PD+YL+G + +   +     +     +   E++ +L +  +
Sbjct: 135 AALPSLSLNRQSNWLLTSHPDIYLFGSLLQAEFFGWNDSRLPVIKSALDEALGELNKAGL 194

Query: 176 RS 177
           R 
Sbjct: 195 RK 196


>gi|160897393|ref|YP_001562975.1| constituent protein [Delftia acidovorans SPH-1]
 gi|160362977|gb|ABX34590.1| constituent protein [Delftia acidovorans SPH-1]
          Length = 205

 Score =  178 bits (451), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 83/184 (45%), Gaps = 14/184 (7%)

Query: 5   FASLLIDVSHYVEKGGFTYLFKNFLHRIEVKINRALRLREMERKIVLSLVEG--SAPLPD 62
           +A L   ++ ++++   T    +F+   E +I R LRLR+   K+ L    G     LPD
Sbjct: 6   YAGLQASIARWLKRSDLTANIPDFISLAEGRIARDLRLRKQITKVTLVTTGGVQGVDLPD 65

Query: 63  DYIEIR--FLEDNKGNKLDHLPLSISLQKNKG--------YIITADSICVLPISSE--DV 110
           +Y+E     L+  +  +L  +P+     K           Y +  + + + P+     ++
Sbjct: 66  NYLEAENITLDGGEPRQLTFVPIEHLDTKYPANYTAMPGVYTLLGNQLLLGPVPDGVYNI 125

Query: 111 VLYYYACIPPLTENNPVNWLLHRAPDLYLYGLVEEIALWEQKIDKATTASALFQESIKKL 170
            + YYA   PL++ N  NWLL   P +YL+  + E  L+    ++A   ++   + I  L
Sbjct: 126 DVTYYARFVPLSDVNTTNWLLQNHPSIYLFSALAEAELFLVNDERAVLWASKATQEIGTL 185

Query: 171 QQND 174
           Q  D
Sbjct: 186 QSVD 189


>gi|56551285|ref|YP_162124.1| hypothetical protein ZMO0389 [Zymomonas mobilis subsp. mobilis ZM4]
 gi|56542859|gb|AAV89013.1| constituent protein [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 219

 Score =  177 bits (448), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 73/182 (40%), Gaps = 10/182 (5%)

Query: 5   FASLLIDVSHYVEKGGFTYLFKNFLHRIEVKINRALRLREMERKIVLSLVEGSAPLPDDY 64
           +  LL  ++ ++E+         F+   E +  R L   E+E +I +        LPDD+
Sbjct: 16  YDGLLKAIALWLERDDLADEIPYFVQLAEARFRRLLTNPELETEITV-AAGCPVTLPDDF 74

Query: 65  IEIRFLEDNKGNKLDH-------LPLSISLQKNKGYIITADSICVLPISSEDVV--LYYY 115
             +R L    G +          +      Q    + + A  + + P+   +    L Y 
Sbjct: 75  EALRLLYPAGGRRDRAFLQLSPDVFQQGKHQNKSVFTLMAGQLWISPLPETETAFSLVYR 134

Query: 116 ACIPPLTENNPVNWLLHRAPDLYLYGLVEEIALWEQKIDKATTASALFQESIKKLQQNDI 175
           A +P L+ N   NWLL   PD+YL+G + +   +     +     +   E++ +L +  +
Sbjct: 135 AALPSLSLNRQSNWLLASHPDIYLFGSLLQAEFFGWNDSRLPVIKSALDEALGELNKAGL 194

Query: 176 RS 177
           R 
Sbjct: 195 RK 196


>gi|260753093|ref|YP_003225986.1| constituent protein [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|258552456|gb|ACV75402.1| constituent protein [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 219

 Score =  176 bits (447), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 73/182 (40%), Gaps = 10/182 (5%)

Query: 5   FASLLIDVSHYVEKGGFTYLFKNFLHRIEVKINRALRLREMERKIVLSLVEGSAPLPDDY 64
           +  LL  ++ ++E+         F+   E +  R L   E+E +I +        LPDD+
Sbjct: 16  YDGLLKAIALWLERDDLADEIPYFVQLAEARFRRLLTNPELETEITV-AAGCPVALPDDF 74

Query: 65  IEIRFLEDNKGNKLDH-------LPLSISLQKNKGYIITADSICVLPISSEDVV--LYYY 115
             +R L    G +          +      Q    + + A  + + P+   +    L Y 
Sbjct: 75  ETLRLLYPAGGRRDRAFLQLSPDVFQQGKHQNKSVFTLMAGQLWISPLPETETAFSLVYR 134

Query: 116 ACIPPLTENNPVNWLLHRAPDLYLYGLVEEIALWEQKIDKATTASALFQESIKKLQQNDI 175
           A +P L+ N   NWLL   PD+YL+G + +   +     +     +   E++ +L +  +
Sbjct: 135 AALPSLSLNRQSNWLLASHPDIYLFGSLLQAEFFGWNDSRLPVIKSALDEALGELNKAGL 194

Query: 176 RS 177
           R 
Sbjct: 195 RK 196


>gi|148257049|ref|YP_001241634.1| hypothetical protein BBta_5781 [Bradyrhizobium sp. BTAi1]
 gi|146409222|gb|ABQ37728.1| hypothetical protein BBta_5781 [Bradyrhizobium sp. BTAi1]
          Length = 217

 Score =  163 bits (413), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 57/200 (28%), Positives = 90/200 (45%), Gaps = 24/200 (12%)

Query: 1   MAKDFASLLIDVSHYVEKGGFTYL---FKNFLHRIEVKINRALRLREMERKIVLSLVEGS 57
           +  +++SL   VS Y+ +   T L     +F+   E K+NR L +R+MER+ +  +  GS
Sbjct: 3   LISNYSSLQSAVSEYLARDQDTTLVSRIPSFIQLAEAKLNRQLFVRQMERRAIAVVDLGS 62

Query: 58  AP-----LPDDYIEIRF-----------LEDNKGNKLDHLPLSIS--LQKNKGYIITADS 99
           A      LP D+  +R            LE   G +LD     I     + + + +  D 
Sbjct: 63  AEPNFIALPSDFQSMRRIRLTSVRGQPPLEFKSGVQLDEYRSRICNVAGQPRYFSLFGDQ 122

Query: 100 ICVLPISS--EDVVLYYYACIPPLTENNPVNWLLHRAPDLYLYGLVEEIALWEQKIDKAT 157
           I + P       + + Y   IPPL  N+  NWLL  APDLYLYG + E A + ++  +  
Sbjct: 123 IELAPRPDAAYTIEMVYRRTIPPLASND-SNWLLMLAPDLYLYGALLESAPYLKEDGRIQ 181

Query: 158 TASALFQESIKKLQQNDIRS 177
           T    F  ++  L    + S
Sbjct: 182 TWGLGFSTALADLNTLGLSS 201


>gi|27476047|ref|NP_775249.1| constituent protein [Pseudomonas phage PaP3]
 gi|27414477|gb|AAL85563.1| ORF.09 [Pseudomonas phage PaP3]
          Length = 208

 Score =  152 bits (383), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 80/187 (42%), Gaps = 15/187 (8%)

Query: 3   KDFASLLIDVSHYVEKGGFT-YLFKNFLHRIEVKINRALRLREMERKIVLSLVEGSAPLP 61
            +   L I    + ++   T  L   F+     ++NR LR+RE E    L    G   +P
Sbjct: 5   NNVTDLAIAAIQWSDRQDLTQELLMLFIGNTTDRLNRLLRVRENEHFETLMAFGGGIEIP 64

Query: 62  DDYIEIRFLEDN---KGNKLDHLPLSI---------SLQKNKGYIITADSICVLPISSED 109
           + ++ +R +  +    G  L ++   I           Q    Y    +   V P+  + 
Sbjct: 65  EHFVALRSITGDALIGGRTLQYITQDIFSHYVNYNYQPQGVTYYTRLGNFWRVYPVVPDG 124

Query: 110 V--VLYYYACIPPLTENNPVNWLLHRAPDLYLYGLVEEIALWEQKIDKATTASALFQESI 167
              ++ Y+  +P L+ +NP  W L + P +YLYG++E+I L+    +++       + ++
Sbjct: 125 APFIVNYWTVLPELSLDNPTTWALTKYPQIYLYGVLEQIYLYTMDEERSMFWGQKLERAV 184

Query: 168 KKLQQND 174
            +LQ  +
Sbjct: 185 MELQNEE 191


>gi|167600433|ref|YP_001671933.1| phage particle protein [Pseudomonas phage LUZ24]
 gi|161168296|emb|CAP45461.1| phage particle protein [Pseudomonas phage LUZ24]
          Length = 208

 Score =  149 bits (376), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 77/187 (41%), Gaps = 15/187 (8%)

Query: 3   KDFASLLIDVSHYVEKGGFT-YLFKNFLHRIEVKINRALRLREMERKIVLSLVEGSAPLP 61
            +   L I    + ++   T  L   F+     ++NR LR+RE E    L    G   +P
Sbjct: 5   NNVTDLAIAAIQWSDRQDLTQELLMLFIGNTTDRLNRLLRVRENEHFETLMAFGGGIEIP 64

Query: 62  DDYIEIRFLEDN---KGNKLDHLPLSI---------SLQKNKGYIITADSICVLPISSED 109
           + ++ +R +  +    G  L ++               Q    Y    +   V P+  + 
Sbjct: 65  EHFVALRSITGDSLIGGRTLQYITQDTFTHYVNYNYQPQGVTYYTRLGNFWRVFPVVPDG 124

Query: 110 V--VLYYYACIPPLTENNPVNWLLHRAPDLYLYGLVEEIALWEQKIDKATTASALFQESI 167
              ++ Y+  +P L+  NP  W L + P +YLYG++E+I L+     ++       + ++
Sbjct: 125 APFIVNYWTVLPELSLANPTTWALTKYPQIYLYGVLEQIYLYTMDEARSQFWGQKLERAV 184

Query: 168 KKLQQND 174
            +LQ  +
Sbjct: 185 MELQNEE 191


>gi|170752055|ref|YP_001758315.1| hypothetical protein Mrad2831_5687 [Methylobacterium radiotolerans
           JCM 2831]
 gi|170658577|gb|ACB27632.1| conserved hypothetical protein [Methylobacterium radiotolerans JCM
           2831]
          Length = 217

 Score =  146 bits (369), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 53/188 (28%), Positives = 76/188 (40%), Gaps = 22/188 (11%)

Query: 3   KDFASLLIDVSHYVEKGGFTYLFKNFLHRIEVKINRALRLREMERKIVLSLVEGSA---P 59
            D ASL   V  Y+ +         F+   E   N  LR REME +  L          P
Sbjct: 6   TDLASLRAAVLDYIARPDLADAVPGFIALAESHFNAILRAREMEAEASLGTAAAPVAVMP 65

Query: 60  LPDDYIEIRFLE---------------DNKGNKLDHLPLSISLQKNKGYIITADSICVLP 104
           LP D+IE   +                D+   +  H P        + + I A ++ ++P
Sbjct: 66  LPADFIEWLAVSWAGSGRTARPTFAEADSPEARFRHRPG----GDPQYFAIRAGNVRMVP 121

Query: 105 ISSEDVVLYYYACIPPLTENNPVNWLLHRAPDLYLYGLVEEIALWEQKIDKATTASALFQ 164
                V L YYA IPPLT+  P NWLL +APD YLY ++ E  L+++        + L  
Sbjct: 122 EKPGAVTLAYYAAIPPLTDAAPSNWLLAKAPDAYLYAVLAEAYLFQKDPAAVQAHTGLML 181

Query: 165 ESIKKLQQ 172
             +  L  
Sbjct: 182 SVLNALGI 189


>gi|307308930|ref|ZP_07588613.1| hypothetical protein SinmeBDRAFT_4497 [Sinorhizobium meliloti
           BL225C]
 gi|306900564|gb|EFN31177.1| hypothetical protein SinmeBDRAFT_4497 [Sinorhizobium meliloti
           BL225C]
          Length = 191

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 80/180 (44%), Gaps = 6/180 (3%)

Query: 1   MAKDFASLLIDVSHYVEKGGFTYLFKNFLHRIEVKINRALRLREMERKIVLSLVEGSAPL 60
           M   +   +  ++    +         F+   E  +    +    E+ + LS+V+ +A L
Sbjct: 1   MTLTYDDFIATINSLTVRTD--APIPTFISLAEDSLRTLTKHYLAEKTVTLSVVDNTAVL 58

Query: 61  PDDYIEIRFLEDNKGNKLDHL-PLSISLQKNK-GYIITADSICVLPI-SSEDVVLYYYAC 117
           P D+IE+R +  + G     + P   +L  ++ GY ++ +++  +      +V + Y++ 
Sbjct: 59  PSDFIELRSITGSNGYVYKPVNPAQATLYADEVGYYLSGNTLVFVGNYVESEVTILYWSA 118

Query: 118 IPPLTENNPVNWLLHRAPDLYLYGLVEEIALWEQKIDKATTASALFQESIKKLQQNDIRS 177
              L+     NWL  R P +Y+  +++E   WE+  +      A  QE + ++ ++D R 
Sbjct: 119 FEGLSP-TQSNWLFDRFPTVYVAAVMKEFYRWEKDAEGVAIEQATLQELLGRVAEDDRRG 177


>gi|291334401|gb|ADD94057.1| hypothetical protein BBta_5781 [uncultured phage MedDCM-OCT-S01-C1]
          Length = 217

 Score =  127 bits (319), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 80/203 (39%), Gaps = 29/203 (14%)

Query: 4   DFASLLIDVSHYVEK--GGFTYLFKNFLHRIEVKINRALRLREMERKIVLSLVEGSAP-- 59
           ++  +      YV++     T     F   +E K+N AL+  E   +  + L E      
Sbjct: 2   NYKQIKEAAQGYVDRYDDELTSAIPGFTKVVESKVNSALKTGEQSVRAQIWL-ERDIEYY 60

Query: 60  -LPDDYIEIRFLE----------------DNKGNKLDHLPLS-----ISLQKNKGYIITA 97
            LP D+   R +E                   G  L ++           ++ + Y + A
Sbjct: 61  GLPSDWGGFRDVELVQKGSNSITPGQGIHPVGGMTLIYVNPEQMNGTHRRERQRYYTVIA 120

Query: 98  DSICVLPISSEDVV-LYYYACIPPLTENNPVNWLLHRAPDLYLYGLVEEIALWEQKIDKA 156
           + I V P +  D++ + Y+  +P LT +   NWL  + PD Y++GL  EI+ + +     
Sbjct: 121 NQIQVAPPTDNDMLEIVYFQRVPALTTDTDTNWLSEKHPDCYIFGLCAEISAFAKDAMGF 180

Query: 157 TTASALFQESIKKLQQND-IRSW 178
                 F ES+  +  +D I  W
Sbjct: 181 ELYKMRFNESLGDIAMDDQITRW 203


>gi|221199515|ref|ZP_03572559.1| conserved hypothetical protein [Burkholderia multivorans CGD2M]
 gi|221205584|ref|ZP_03578599.1| conserved hypothetical protein [Burkholderia multivorans CGD2]
 gi|221174422|gb|EEE06854.1| conserved hypothetical protein [Burkholderia multivorans CGD2]
 gi|221180800|gb|EEE13203.1| conserved hypothetical protein [Burkholderia multivorans CGD2M]
          Length = 198

 Score =  125 bits (314), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 72/180 (40%), Gaps = 8/180 (4%)

Query: 3   KDFASLLIDVSHYVEKGGFTYLFKNFLHRIEVKINRALRLREMERKIVLSLVEGSAPLPD 62
             ++ L   +  ++++   + L  +F+   E   NR +  R        +  + +  LP 
Sbjct: 4   ASYSELQSVMKRWLKRNDLSDLMPDFIMLAEQHFNRKIFTRARRATFQFTPSKFTVDLPP 63

Query: 63  DYIEIRFLEDNKGNKLDHLPLSISLQKNK-------GYIITADSICVLPISSEDVV-LYY 114
           D+  +  +         H     S            G+ I  D++         V+ + Y
Sbjct: 64  DWDRLIAVYYGGHPLKQHAIGEESAYAGGQAQLMIGGFQINGDTLAFGADQLGQVLRIDY 123

Query: 115 YACIPPLTENNPVNWLLHRAPDLYLYGLVEEIALWEQKIDKATTASALFQESIKKLQQND 174
           Y  I PL++ N  NWLL  APD+YL+G + E A++ +   +AT        +I +L   D
Sbjct: 124 YTVIEPLSDTNESNWLLEDAPDIYLFGALHEAAMYVRDDARATLWMQKRDLAIDELTTED 183


>gi|148557350|ref|YP_001264932.1| hypothetical protein Swit_4456 [Sphingomonas wittichii RW1]
 gi|148502540|gb|ABQ70794.1| hypothetical protein Swit_4456 [Sphingomonas wittichii RW1]
          Length = 310

 Score = 91.7 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 68/201 (33%), Gaps = 33/201 (16%)

Query: 3   KDFASLLIDVSHYVEKGGFTYLFKNFLHRIEVKINRALR--------LREMERKIVLSLV 54
             ++ L+  ++ +++        ++F+   E +IN  L         +R M     L++ 
Sbjct: 74  STYSELVASLAAWLDGSDLGGRERDFITLCEDEINARLAAAVGQGAVIRPMMVVDPLTID 133

Query: 55  EGSAPLPD--------------------DYIEIRFLED---NKGNKLDHLPLSISLQKNK 91
                LPD                    DY+    L      +  +   +   I     +
Sbjct: 134 AELVDLPDGDTVKPISIELSGLDRPWSLDYVSPERLVGLRFGEAEQRSAMRAVIDGDPPR 193

Query: 92  GYIITADSICVLPISSE--DVVLYYYACIPPLTENNPVNWLLHRAPDLYLYGLVEEIALW 149
            Y +  D +   P         +  +  IP L++  P NW+L    + YLYG + +  ++
Sbjct: 194 FYTVIGDQLRFHPAPEGSFGATIARFVKIPALSDAMPTNWVLASHRNAYLYGSLAQAEMF 253

Query: 150 EQKIDKATTASALFQESIKKL 170
                     + LF  ++  L
Sbjct: 254 GWNDSGTANWAELFGNAMDGL 274


>gi|291334634|gb|ADD94282.1| constituent protein [uncultured phage MedDCM-OCT-S04-C64]
          Length = 216

 Score = 82.5 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 66/179 (36%), Gaps = 22/179 (12%)

Query: 3   KDFASLLIDVSHYVEKGGFTY-LFKNFLHRIEVKINRA-----------LRLREMERKIV 50
            +++ L   +S++  +  FT     +F+   E  + R            +R     +   
Sbjct: 4   ANYSDLKNAISNWTARSDFTTSNLNDFIDLAERYLKRVPVPVEAPEIGGIRGDIQRKTGT 63

Query: 51  LSLVEGSAPLPDDYIEIRF--LEDNKGNKLDHL-PLSISLQ-----KNKGYIITADSIC- 101
           L     +  LP D+ EI    L  +    L  L P  +SL          +   +D I  
Sbjct: 64  LVAGTATLALPTDFQEIYRFTLTADTFTTLRFLAPNQLSLNHRSGSGKPAFFTISDVIEF 123

Query: 102 -VLPISSEDVVLYYYACIPPLTENNPVNWLLHRAPDLYLYGLVEEIALWEQKIDKATTA 159
            V P S+    L YY  +  L+++N  NW++   PD YL   +     + Q    A + 
Sbjct: 124 EVAPDSNYAYELSYYPMVTGLSDSNTTNWIIENYPDAYLTASLYHAYRFLQDFQSAQSY 182


>gi|167583568|ref|YP_001671758.1| conserved hypothetical protein [Enterobacteria phage phiEco32]
 gi|164375406|gb|ABY52814.1| conserved hypothetical protein [Enterobacteria phage phiEco32]
          Length = 250

 Score = 82.1 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 77/206 (37%), Gaps = 34/206 (16%)

Query: 5   FASLLIDVSHYVEKGG--FTYLFKNFLHRIEVKINRALRLREMERKIVLSLVEGSAPLPD 62
           +  L   V+ + ++    F     NF++  E +I R LR+  +E+++ L + +G A +P 
Sbjct: 13  YGWLKKAVALWADRDDDEFVNQIPNFINFAEKEIYRNLRIPPLEKEVYLDIKDGVAYIPP 72

Query: 63  DYIEIR-----------FLEDNKGNKLDH----LPLSISLQKNKGYIITADSICVLP--- 104
           DY+E +            +   +          +  S    +   +          P   
Sbjct: 73  DYLEAQWMMRAKDGTIFQVTSPEEISYRRQHGTINPSHWNNQPVNFARFGSRFIFYPSIE 132

Query: 105 --------------ISSEDVVLYYYACIPPLTENNPVNWLLHRAPDLYLYGLVEEIALWE 150
                          +   V+L YYA  P   E+   + +L  AP+L LY  +    L+ 
Sbjct: 133 ADTPYYPDDGSPLIPAENSVILSYYADPPEFHEDTDTSAILTIAPELLLYFTLRHACLFV 192

Query: 151 QKIDKATTASALFQESIKKLQQNDIR 176
           Q  +     SAL +  + ++ + + +
Sbjct: 193 QDDNGVQKWSALGKAILDEIVEQNKK 218


>gi|294083941|ref|YP_003550698.1| hypothetical protein SAR116_0371 [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292663513|gb|ADE38614.1| hypothetical protein SAR116_0371 [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 203

 Score = 79.8 bits (195), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 71/180 (39%), Gaps = 12/180 (6%)

Query: 4   DFASLLIDVSHYVEKGGFT-YLFKNFLHRIEVKINRALRLREMER--KIVLSLVEGSAPL 60
           ++  L       + +   T  L   F+ +   +I R LR    ER  +I +S    +  L
Sbjct: 2   NYGDLKTHFQDVLNRSDITSDLTTRFIDQGIARIQRQLRTPMSERVLEIAISSQTATMTL 61

Query: 61  PDDYIEIRFLEDNKG-------NKLDHLPLSISLQKNKGYIITADSICVLPISSEDVVLY 113
           P D++EI  L  +          +   L  +    K   +   A+ I + P  ++  ++ 
Sbjct: 62  PSDFLEIISLYHSSNELERVSMRRFRELNDNNHSGKPIYFARQAEKIHLYPQPTDGTLVL 121

Query: 114 YYAC-IPPLTENNPVNWLLHRAPDLYLYGLVEEIALWEQKIDKATTASALFQESIKKLQQ 172
           YY    P L+ ++  N L   A DL +Y  +   + +     +A      F + + ++Q+
Sbjct: 122 YYHGEFPSLSADSDFNALTKAASDLVIYAGLTYASDYYLD-QRAELFEQKFNQFLTEIQE 180


>gi|291337048|gb|ADD96568.1| constituent protein [uncultured organism MedDCM-OCT-S11-C359]
          Length = 179

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 57/145 (39%), Gaps = 15/145 (10%)

Query: 46  ERKIVLSLVEGSAPLPDDYIEIR-----------FLEDNKGNKLDHLPLSISLQKNKGYI 94
           E     S+   +  LP  ++++R            L      ++D +  S +      Y 
Sbjct: 3   ESDSSFSINAETVALPSGFLQVRDLFILSGGTKYALTYMTPPQMDQIKGSSTSGMPVAYT 62

Query: 95  ITADSICVLPISS--EDVVLYYYACIPPLTENNPVNWLLHRAPDLYLYGLVEEIALW--E 150
           I  D+    P         L YY     L+++N  N++L   P +YLYG +   A +   
Sbjct: 63  IIGDNFRFAPTPDSTYTGTLNYYKSFDALSDSNTTNYILTNHPAIYLYGSLYHAANFLGG 122

Query: 151 QKIDKATTASALFQESIKKLQQNDI 175
            +  +      ++  ++++L++ND 
Sbjct: 123 VEPARLQQWQGMYTTALERLERNDR 147


>gi|291334590|gb|ADD94240.1| hypothetical protein [uncultured phage MedDCM-OCT-S04-C136]
          Length = 135

 Score = 74.8 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 4/102 (3%)

Query: 78  LDHLPLSISLQKNKGYIITADSICVLPISS--EDVVLYYYACIPPLTENNPVNWLLHRAP 135
           +D +  S +      Y I  DS    PI        L YYA    L++ N  N++L   P
Sbjct: 1   MDQIKGSSTTGMPSAYTILGDSFRFAPIPDSAYTGTLNYYAKFAALSDTNTSNYILASHP 60

Query: 136 DLYLYGLVEEIALW--EQKIDKATTASALFQESIKKLQQNDI 175
            +YLYG +   A +       +      ++  ++++L++ND 
Sbjct: 61  AIYLYGSLYHAANFLGGVDPQRLQQWQGMYTTAMERLERNDR 102


>gi|291334843|gb|ADD94483.1| hypothetical protein [uncultured phage MedDCM-OCT-S06-C1041]
          Length = 179

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 47/125 (37%), Gaps = 10/125 (8%)

Query: 45  MERKIVLSLVEGSAPLPDDYIEIRF--LEDNKGNKLDHL-PLSISLQ-----KNKGYIIT 96
             +   L     +  LP D+ EI    L  +    L  L P  +SL          +   
Sbjct: 21  QRKTGTLVAGTATLALPTDFQEIYRFTLTADTFTTLRFLAPNQLSLNHRSGSGKPAFFTI 80

Query: 97  ADSIC--VLPISSEDVVLYYYACIPPLTENNPVNWLLHRAPDLYLYGLVEEIALWEQKID 154
           +D I   V P S+    L YY  +  L+++N  NW++   PD YL   +     + Q   
Sbjct: 81  SDVIEFEVAPDSNYAYELSYYPMVTGLSDSNTTNWIIENYPDAYLTASLYHAYRFLQDFQ 140

Query: 155 KATTA 159
            A + 
Sbjct: 141 SAQSY 145


>gi|316934289|ref|YP_004109271.1| hypothetical protein Rpdx1_2957 [Rhodopseudomonas palustris DX-1]
 gi|315602003|gb|ADU44538.1| hypothetical protein Rpdx1_2957 [Rhodopseudomonas palustris DX-1]
          Length = 207

 Score = 61.7 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 58/158 (36%), Gaps = 19/158 (12%)

Query: 4   DFASLLIDVSHYVEKGGFTYLFKN-FLHRIEVKINRALRLREMERKIVLS-----LVEGS 57
           ++  L  D    +++   T    + F+ +   ++ R LR+  ME+ I +        +G 
Sbjct: 2   NYGELKADFLGLLKRRDLTDAQADNFIRKAVNRVQRVLRIPPMEKSIAVIYDGEQFADGQ 61

Query: 58  APLPDDYIEIRFLE----DNKGNKLDH------LPLSISLQKNKGYIITADSICVLPISS 107
            P+P DY+ +  L          +L        L L I   +   ++       + PI  
Sbjct: 62  LPIPADYLRLISLSATPPGGSERELAQSDLQTVLDLRIRTGRPTNFVRRGGYWSLAPIPE 121

Query: 108 EDV--VLYYYACIPPLTENNPVNWLLHRAPDLYLYGLV 143
                 + YY   P LT     N+L + A D+     +
Sbjct: 122 AGTKFRIDYYDEFPALTAGAD-NYLTNGAADMVTSAAL 158


>gi|221271435|dbj|BAH15188.1| hypothetical protein [Serratia phage KSP100]
          Length = 160

 Score = 56.7 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 52/142 (36%), Gaps = 17/142 (11%)

Query: 3   KDFASLLIDVSHYVEKGG--FTYLFKNFLHRIEVKINRALRLREMERKIVLSLVEGSAPL 60
            ++A L+ +V  ++ +           F+   E +I R L++   E  + L++ +G   +
Sbjct: 4   TNYAELVAEVKRWLNRDDPDTLDAIPTFITFAEKEIYRVLKMPVYECLVSLNIKKGRCEI 63

Query: 61  PDDYIEIRFLEDNKGNK---------LDHLPLSISLQKNKGYIITADSICVLPISSED-- 109
           P + +++  +  +             + H+   I  ++   Y    +      +      
Sbjct: 64  PFNLVQLIEIYTSDNKVGRMTSHREMIRHIADKIKHEQF-YYSRVGNEYHFYGVDDTGEG 122

Query: 110 ---VVLYYYACIPPLTENNPVN 128
              V  +Y+     L+ NN V 
Sbjct: 123 KPEVFCHYFQDPEMLSYNNQVT 144


>gi|291334591|gb|ADD94241.1| hypothetical protein [uncultured phage MedDCM-OCT-S04-C136]
          Length = 68

 Score = 51.3 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 5  FASLLIDVSHYVEKGGFTYLFK-NFLHRIEVKINRALRLREMERKIVLSLVEGSAPLPDD 63
          ++ L   +++++ +   T     +F+   E   N  LR+R+M     +++   +  +P D
Sbjct: 6  YSDLKTSIANWLNRSDLTTEIAEDFIVLAEADFNSKLRIRKMNTSTSITIDSETESVPTD 65

Query: 64 Y 64
          +
Sbjct: 66 F 66


>gi|291337047|gb|ADD96567.1| hypothetical protein [uncultured organism MedDCM-OCT-S11-C359]
          Length = 75

 Score = 42.4 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 3  KDFASLLIDVSHYVEKGGFTYLFK-NFLHRIEVKINRALRLRE 44
           +++ L   V++++ +   T     +F+   E   N  LR+R+
Sbjct: 4  SNYSELQSSVANWLNRSDLTTEITGDFIVLTEKDFNSKLRIRK 46


>gi|242046494|ref|XP_002399601.1| sentrin/sumo-specific protease, putative [Ixodes scapularis]
 gi|215497553|gb|EEC07047.1| sentrin/sumo-specific protease, putative [Ixodes scapularis]
          Length = 341

 Score = 38.6 bits (88), Expect = 0.31,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 49/150 (32%), Gaps = 36/150 (24%)

Query: 64  YIEIRFLEDNKGNKLD-HLPLSISLQKNK------------GYIITADSICVLPISSEDV 110
           ++ +R LED  G +   H+P       N             G  +  D + V+  + ED 
Sbjct: 61  FVALRRLEDLPGFRFQSHVPPETKSDANSSTSSRGLHRPEHGAQLNGDDVQVVGGTDEDS 120

Query: 111 V----------------------LYYYACIPPLTENNPVNWLLHRAPDLYLYGLVEEIAL 148
           +                      L Y   +  L      NWL     D Y+ GL+ E A 
Sbjct: 121 LRDRVRSTIRRSRHDPQRVLTRKLGYSVTVSDLRTLLGTNWLNDVVIDFYM-GLIVERAS 179

Query: 149 WEQKIDKATTASALFQESIKKLQQNDIRSW 178
            EQ   +    +  F   ++    + +R W
Sbjct: 180 LEQGGMRVHAVTTHFFNVLRSRGYDAVRRW 209


>gi|163783852|ref|ZP_02178831.1| hypothetical protein HG1285_12877 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880875|gb|EDP74400.1| hypothetical protein HG1285_12877 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 188

 Score = 37.4 bits (85), Expect = 0.81,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 48/105 (45%), Gaps = 10/105 (9%)

Query: 45  MERKIVLSLVEGSAPLPDDYIEIRFLEDNKGNKLDHLPLSISLQKNKGYIITADSICVLP 104
           + +++ L+L    A LPDD++    +   K   L+ +P      K   Y I   ++    
Sbjct: 50  LIKEVDLTLTNNQAVLPDDFVREYSVVSGK-YILNSIPPDAETDKY-SYKIVGKTLY--- 104

Query: 105 ISSEDVVLYYYACIPPLTENNPVNWLLHRAPDLYLYGLVEEIALW 149
            +++ V LYY+   P  +  +    +    P++++  L+ EIA +
Sbjct: 105 STNDSVKLYYFYMYPSYSAVSDTVVI----PNVFV-NLLREIAAY 144


>gi|327308534|ref|XP_003238958.1| cleavage and polyadenylylation specificity factor [Trichophyton
           rubrum CBS 118892]
 gi|326459214|gb|EGD84667.1| cleavage and polyadenylylation specificity factor [Trichophyton
           rubrum CBS 118892]
          Length = 1024

 Score = 37.0 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 56  GSAPLPDDYIEIRFLEDNKGNK-LDHLPLSISLQKNKGYIITADSICVLPISSEDVVLYY 114
            SAPL   ++    +  +  +  L     + S Q   GY IT     +LP  + + +  Y
Sbjct: 105 ASAPLAATFLPSTSVTASDPSSGLTIQSATSSSQGPSGYEITGSGRILLPPPTNEDIARY 164

Query: 115 YACIPPLTENNP 126
           ++ I PL  + P
Sbjct: 165 FSLIHPLKYSQP 176


>gi|312383817|gb|EFR28745.1| hypothetical protein AND_02903 [Anopheles darlingi]
          Length = 719

 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 40/124 (32%), Gaps = 14/124 (11%)

Query: 37  NRALRLREMERKIVLSLVEGSAPLPDDYIEIRFLEDNKGNKLDHLPLSISLQKNKGYIIT 96
            R   + + E K ++  ++   PL  D+     +  +     D  P   S      + ++
Sbjct: 368 RRDPSISDTETKELIEALQQEEPLGSDW---SVVFPDVPMAGDEAPAGTSSSSGDAFSVS 424

Query: 97  ADSICVLPISSEDVVLYYYACIPPLTENNPVNWLLHRAPDLYLYGLVEEIALWEQKIDKA 156
            +     P+ +      +           P+ WL    P++ + GL  + +L +      
Sbjct: 425 GEQWLQEPLDAGQRSFCW-----------PMEWLPKDFPNIRVIGLNYDSSLSQWSATGC 473

Query: 157 TTAS 160
               
Sbjct: 474 PCEK 477


>gi|58584562|ref|YP_198135.1| outer membrane protein [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
 gi|58418878|gb|AAW70893.1| Probable outer membrane protein [Wolbachia endosymbiont strain TRS
           of Brugia malayi]
          Length = 983

 Score = 36.3 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 50/133 (37%), Gaps = 22/133 (16%)

Query: 2   AKDFASLLIDVSHYVEKGGFTYLFKNFLHRIE---------------------VKINRAL 40
           + + A   +++S +  K        +++   E                      KIN  +
Sbjct: 313 SANHALFRVNISKFAAK-DLCTYVPDYIINSEFKSWYCDNIDGNILNVIVSFNGKINNLI 371

Query: 41  RLREMERKIVLSLVEGSAPLPDDYIEIRFLEDNKGNKLDHLPLSISLQKNKGYIITADSI 100
                +  +V  +  GS    +D+ ++R L  +   K D L ++++  K + + I   +I
Sbjct: 372 NNDLSDVIVVADIENGSVKFDEDFEQVRELSGDLVLKNDSLKITVNSAKFQNFTINGCNI 431

Query: 101 CVLPISSEDVVLY 113
            +  +  ED VL 
Sbjct: 432 EMNSLDREDSVLT 444


>gi|327313420|ref|YP_004328857.1| outer membrane efflux protein [Prevotella denticola F0289]
 gi|326946163|gb|AEA22048.1| outer membrane efflux protein [Prevotella denticola F0289]
          Length = 501

 Score = 35.9 bits (81), Expect = 2.3,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 69/180 (38%), Gaps = 9/180 (5%)

Query: 1   MAKDFASLLIDVSHYVEKGGFTYLFKNFLHRIEVKINRALRLREMERKIVLSLVEGSAPL 60
           +A     L +DV+         +  ++ +   ++ +     L E++  I LS  EG A L
Sbjct: 242 VATRADGLKVDVAVNTADLQIAH-IQSGVSLTKMALCELCGL-ELDGDIRLS-DEGDADL 298

Query: 61  ---PDDYIEIRFLEDNKGNKLDHLPLSISLQKNKGYIITADSICVLPISSEDVVLYYYAC 117
              P    E+R    +   +   +   + L +N   +   ++  V  +    V+L     
Sbjct: 299 TPTPSAQFEVRDTTGSDSRETADVRPELRLLQNAIDMSRQNTKLVRSLYLPHVLLT---G 355

Query: 118 IPPLTENNPVNWLLHRAPDLYLYGLVEEIALWEQKIDKATTASALFQESIKKLQQNDIRS 177
              L+  N  N    R  DL+  G+  ++ +W     K    ++    SI +L+ +D R 
Sbjct: 356 GYSLSNPNLFNGFQKRFTDLWNIGITVQVPIWNWGEGKYKVRASKTATSIAQLEMDDARK 415


>gi|159185178|ref|NP_355326.2| UDP-hexose transferase [Agrobacterium tumefaciens str. C58]
 gi|159140446|gb|AAK88111.2| UDP-hexose transferase [Agrobacterium tumefaciens str. C58]
          Length = 314

 Score = 35.5 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 44/113 (38%), Gaps = 4/113 (3%)

Query: 9   LIDVSHYVEKGGFTYLFKNFLHRIEVKINRALRLREMERKIVLSLVEGSAPLPDDYIEIR 68
           L     +V   G  ++    +HR  V +NR L  R+ E  I     + +        E+R
Sbjct: 200 LAAAGRFVYLPG-CHVLDYRVHRTSVMMNRLLTFRDCEPAIEAVFSDPAIVAAISPQELR 258

Query: 69  FLEDNKGNKLDHLPLSISLQKNKG---YIITADSICVLPISSEDVVLYYYACI 118
            L     N ++   ++ + +  +    +   AD+I   P  S   V++  A +
Sbjct: 259 RLRHRSENHMNAYTVAQAFRARRYREAFSALADTILNRPRQSLRAVVFSAAAL 311


>gi|326477880|gb|EGE01890.1| cleavage and polyadenylylation specificity factor [Trichophyton
           equinum CBS 127.97]
          Length = 1024

 Score = 35.5 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 1/72 (1%)

Query: 56  GSAPLPDDYIEIRFLEDNKGNKLDHLPLSISL-QKNKGYIITADSICVLPISSEDVVLYY 114
            SAPL   ++    +  +  +    +  + S  Q   GY  T     +LP  + + +  Y
Sbjct: 105 ASAPLAATFLPSTSVTASDPSSGLTIQSATSPSQGPSGYETTGSGRILLPPPTNEDIARY 164

Query: 115 YACIPPLTENNP 126
           ++ I PL  + P
Sbjct: 165 FSLIHPLKYSQP 176


>gi|85713742|ref|ZP_01044732.1| hypothetical protein NB311A_04359 [Nitrobacter sp. Nb-311A]
 gi|85699646|gb|EAQ37513.1| hypothetical protein NB311A_04359 [Nitrobacter sp. Nb-311A]
          Length = 334

 Score = 35.1 bits (79), Expect = 3.5,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 1/65 (1%)

Query: 18  KGGFTYLFKNFLHRIEVKINRALRLREMERKIVLSLVEGSAPLPDDYIEIRFLEDNKGNK 77
           +   ++     + R +      LRL  M R +  S      PLP D +       N G  
Sbjct: 220 RSTLSHHTPALIARYQAACRAILRLGAMRRHVR-SDSGAGVPLPCDPMVQEVATGNAGLT 278

Query: 78  LDHLP 82
           +D  P
Sbjct: 279 IDPKP 283


>gi|326473038|gb|EGD97047.1| cleavage and polyadenylylation specificity factor [Trichophyton
           tonsurans CBS 112818]
          Length = 1024

 Score = 35.1 bits (79), Expect = 3.6,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 1/72 (1%)

Query: 56  GSAPLPDDYIEIRFLEDNKGNKLDHLPLSISL-QKNKGYIITADSICVLPISSEDVVLYY 114
            SAPL   ++    +  +  +    +  + S  Q   GY  T     +LP  + + +  Y
Sbjct: 105 ASAPLAATFLPSTSVTASDPSSGLTIQSATSPSQGPSGYETTGSGRILLPPPTNEDIARY 164

Query: 115 YACIPPLTENNP 126
           ++ I PL  + P
Sbjct: 165 FSLIHPLKYSQP 176


>gi|254463059|ref|ZP_05076475.1| N-terminal double-transmembrane domain protein [Rhodobacterales
           bacterium HTCC2083]
 gi|206679648|gb|EDZ44135.1| N-terminal double-transmembrane domain protein [Rhodobacteraceae
           bacterium HTCC2083]
          Length = 911

 Score = 35.1 bits (79), Expect = 4.2,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 45/128 (35%), Gaps = 7/128 (5%)

Query: 10  IDVSHYVEKGGFTYLFKNFLHRIEVKINRALRLREMERKIVLSLVEGSAPLPDDYIEIRF 69
              +  + +   T+     +   ++ +   LR R     I      G+  L DD +  R 
Sbjct: 251 SGAARILTRADITFEEGAKIAVQDMSLPAELRARITHFAISGVRSAGAITLSDDSLRRRE 310

Query: 70  LEDNKGNKLDH-----LPLSISLQ--KNKGYIITADSICVLPISSEDVVLYYYACIPPLT 122
           +    G +         PL    Q  +    ++  + + +LP S + ++L   A + P  
Sbjct: 311 VALIAGREDREGLELLSPLHYLRQALQPNAELLEGNLVDILPASPDVMILADVATLAPAE 370

Query: 123 ENNPVNWL 130
           E     W+
Sbjct: 371 EAELTEWV 378


>gi|134096796|ref|YP_001102457.1| integral membrane indolylacetylinositol arabinosyltransferase EmbC
           (arabinosylindolylacetylinositol synthase)
           [Saccharopolyspora erythraea NRRL 2338]
 gi|133909419|emb|CAL99531.1| integral membrane indolylacetylinositol arabinosyltransferase EmbC
           (arabinosylindolylacetylinositol synthase)
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 1043

 Score = 35.1 bits (79), Expect = 4.2,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 47/134 (35%), Gaps = 16/134 (11%)

Query: 7   SLLIDVSHYVEKG------GFTYLFKNFLHRIEVKINRALRLREMERKIVLSLVEGSAPL 60
            LL   + +          G T +   F+     ++ R LR+ +M     ++     A  
Sbjct: 431 GLLGAAALWAGLSMAVNPMGITAIAP-FIVLA-GRLRRMLRVPDMVLLAGITSTGLVAMF 488

Query: 61  PDDYIE-IRFLEDNKGNKLDHLPLSISLQKNK---GYIITADSICVLPISSEDVVLYYYA 116
            D  +   R      G    ++P  + +Q+ +   G+ +  D     P+    VVL + A
Sbjct: 489 ADQSLAGAREATRMHGFYGPNVPWYLEIQRYQFLLGFDLQGDVARRAPVLLTAVVLLFTA 548

Query: 117 CIPPLTENNPVNWL 130
               L  +    WL
Sbjct: 549 ----LLLSRGARWL 558


>gi|291005160|ref|ZP_06563133.1| integral membrane indolylacetylinositol arabinosyltransferase EmbC
           (arabinosylindolylacetylinositol synthase)
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 1080

 Score = 34.7 bits (78), Expect = 4.6,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 47/134 (35%), Gaps = 16/134 (11%)

Query: 7   SLLIDVSHYVEKG------GFTYLFKNFLHRIEVKINRALRLREMERKIVLSLVEGSAPL 60
            LL   + +          G T +   F+     ++ R LR+ +M     ++     A  
Sbjct: 468 GLLGAAALWAGLSMAVNPMGITAIAP-FIVLA-GRLRRMLRVPDMVLLAGITSTGLVAMF 525

Query: 61  PDDYIE-IRFLEDNKGNKLDHLPLSISLQKNK---GYIITADSICVLPISSEDVVLYYYA 116
            D  +   R      G    ++P  + +Q+ +   G+ +  D     P+    VVL + A
Sbjct: 526 ADQSLAGAREATRMHGFYGPNVPWYLEIQRYQFLLGFDLQGDVARRAPVLLTAVVLLFTA 585

Query: 117 CIPPLTENNPVNWL 130
               L  +    WL
Sbjct: 586 ----LLLSRGARWL 595


>gi|113970248|ref|YP_734041.1| 2,4-dienoyl-CoA reductase [Shewanella sp. MR-4]
 gi|113884932|gb|ABI38984.1| 2,4-dienoyl-CoA reductase [Shewanella sp. MR-4]
          Length = 672

 Score = 34.7 bits (78), Expect = 4.9,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 44/119 (36%), Gaps = 14/119 (11%)

Query: 17  EKGGFTYLFKNFL-----HRIEVKINRALRLREMERKIVLSLVEGSAPLPDDYIEIRFLE 71
            K  F    + FL     H+I++++N  L  + +E +    +V  S  +P    E+    
Sbjct: 421 GKEEFNETIRYFLNQIKLHKIDLRLNTRLDAKVLETETFDEIVIASGVVPR---ELSLPG 477

Query: 72  DNKGNKLDHLPLSISLQKNKGYIITADSICVLPISSEDVVLYYYACIPPLTENNPVNWL 130
            +    +D+       Q   G     + + ++        + +Y C    +  NP  WL
Sbjct: 478 FDSPKVVDY------QQVLTGQATIGNKVALIGAGGIGFDMAHYLCESESSTLNPEKWL 530


>gi|117920410|ref|YP_869602.1| 2,4-dienoyl-CoA reductase [Shewanella sp. ANA-3]
 gi|117612742|gb|ABK48196.1| 2,4-dienoyl-CoA reductase [Shewanella sp. ANA-3]
          Length = 672

 Score = 34.7 bits (78), Expect = 4.9,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 44/119 (36%), Gaps = 14/119 (11%)

Query: 17  EKGGFTYLFKNFL-----HRIEVKINRALRLREMERKIVLSLVEGSAPLPDDYIEIRFLE 71
            K  F    + FL     H+I++++N  L  + +E +    +V  S  +P    E+    
Sbjct: 421 GKEEFNETIRYFLNQIKLHKIDLRLNTRLDAKVLETETFDEIVIASGVVPR---ELSLPG 477

Query: 72  DNKGNKLDHLPLSISLQKNKGYIITADSICVLPISSEDVVLYYYACIPPLTENNPVNWL 130
            +    +D+       Q   G     + + ++        + +Y C    +  NP  WL
Sbjct: 478 FDSPKVVDY------QQVLTGQATIGNKVALIGAGGIGFDMAHYLCESESSTLNPEKWL 530


>gi|302661813|ref|XP_003022569.1| hypothetical protein TRV_03308 [Trichophyton verrucosum HKI 0517]
 gi|291186522|gb|EFE41951.1| hypothetical protein TRV_03308 [Trichophyton verrucosum HKI 0517]
          Length = 1024

 Score = 34.3 bits (77), Expect = 6.0,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 1/72 (1%)

Query: 56  GSAPLPDDYIEIRFLEDNKGNK-LDHLPLSISLQKNKGYIITADSICVLPISSEDVVLYY 114
            SAPL   ++    +  +  +  L     + S Q   GY  T     +LP  + + +  Y
Sbjct: 105 ASAPLAATFLPSTSVTASDPSSGLTIQSATSSAQGPSGYENTGSGRILLPPPTNEDIARY 164

Query: 115 YACIPPLTENNP 126
           ++ I PL  + P
Sbjct: 165 FSLIHPLKYSQP 176


>gi|75762342|ref|ZP_00742220.1| Hypothetical protein RBTH_00565 [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74490167|gb|EAO53505.1| Hypothetical protein RBTH_00565 [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 191

 Score = 34.3 bits (77), Expect = 6.7,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 39/90 (43%), Gaps = 10/90 (11%)

Query: 36  INRALR----LREMERKIVLSLVEGSAPLPDDYIEIRFLEDNKGNKLDHLPLSISLQKNK 91
           +NRAL     +  +E+K  L+       LP+D  ++  +          +P+    Q+  
Sbjct: 27  LNRALDDITPIARVEKKATLTY---PYTLPNDVQDMERVMQMN-KVFTRIPVGEQNQQ-- 80

Query: 92  GYIITADSICVLPISSEDVVLYYYACIPPL 121
           GY +  + + +   S + + +YYY  +  L
Sbjct: 81  GYWVWGNELMLQGGSQQPIEVYYYKKLSHL 110


>gi|148725674|emb|CAM56722.2| novel NACHT domain containing protein [Danio rerio]
          Length = 687

 Score = 34.3 bits (77), Expect = 7.1,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 42/136 (30%), Gaps = 2/136 (1%)

Query: 4   DFASLLIDVSHYVEKGGFTYLFKNFLHRIEVKINRALRLREMERKIVLSLVEGSAPLPDD 63
           ++ S       Y     FT   ++    +E  INR L+  E+E    +   E S     D
Sbjct: 6   EYESADSGDKTYRRHKSFTDNLQSIFQNLETVINRFLKN-ELENFRKILQEENSQEFVKD 64

Query: 64  YIEIRFLEDNKGNKLDHLPLSISLQKNKGYIITADSICVLPISSEDVVLYYYACIPPLTE 123
           + E R +       L    L    Q      +    +         +   Y +    + +
Sbjct: 65  FNENRSIITEAALDLTLFFLREMKQDQAADTLQG-ELFFTNQLKCSLKKKYQSVFEGIAQ 123

Query: 124 NNPVNWLLHRAPDLYL 139
                 L +   DLY+
Sbjct: 124 QGDSTLLNNIYTDLYI 139


>gi|192291441|ref|YP_001992046.1| hypothetical protein Rpal_3065 [Rhodopseudomonas palustris TIE-1]
 gi|192285190|gb|ACF01571.1| conserved hypothetical protein [Rhodopseudomonas palustris TIE-1]
          Length = 212

 Score = 33.9 bits (76), Expect = 9.3,   Method: Composition-based stats.
 Identities = 25/200 (12%), Positives = 54/200 (27%), Gaps = 23/200 (11%)

Query: 1   MAKDFASLLIDVSHYVEKGGFTYLFKNFLHRIEVKINRALRLREMERKIVLSLVEGS--- 57
           MAK   ++L  ++  + +       ++ +               + R      V G    
Sbjct: 1   MAKTLQTMLDRIADDLTRSDLASQAQSAILDAVDHYAHDRFWFNVTRSKTFPTVAGQQAY 60

Query: 58  -----APLPD--DYIEIRFLEDNKGNKLDHLPLS----------ISLQKNKGYIITADSI 100
                A +PD   +  +   +   G  LD +              +  +   Y      +
Sbjct: 61  GSAALAEIPDAIQFDGLFLKDGASGFFLDWVDADEAEWLISGVNTAPGRPTNYTFADAQL 120

Query: 101 CVLPISSEDVVL--YYYACIPPLT-ENNPVNWLLHRAPDLYLYGLVEEIALWEQKIDKAT 157
            + P+      +    +  +P L    +   WL      +  +  +   A   +  + A 
Sbjct: 121 LLWPVPIAAFTIRPLMHYRLPALALPTDSSPWLNEAEQLIRAHAKMLLYANALEDDEGAA 180

Query: 158 TASALFQESIKKLQQNDIRS 177
              A       KL     R 
Sbjct: 181 RMQAQIPAHRAKLDAETSRR 200


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.310    0.128    0.334 

Lambda     K      H
   0.267   0.0391    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,914,617,625
Number of Sequences: 14124377
Number of extensions: 104599541
Number of successful extensions: 272699
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 272601
Number of HSP's gapped (non-prelim): 82
length of query: 178
length of database: 4,842,793,630
effective HSP length: 130
effective length of query: 48
effective length of database: 3,006,624,620
effective search space: 144317981760
effective search space used: 144317981760
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.3 bits)
S2: 76 (34.0 bits)