RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254781138|ref|YP_003065551.1| hypothetical protein CLIBASIA_05200 [Candidatus Liberibacter asiaticus str. psy62] (178 letters) >gnl|CDD|131302 TIGR02248, mutH_TIGR, DNA mismatch repair endonuclease MutH. This family consists exclusively of MutH, an endonuclease in some Proteobacteria that is activated by MutS1 and MutL for methylation-directed mismatch repair. Length = 217 Score = 29.4 bits (66), Expect = 0.54 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 22/72 (30%) Query: 80 HLPLSISLQKNKGYI---------ITADSIC------------VLPISSEDVVL-YYYAC 117 +P+ +L+++KG++ TA S +PI+SE L + C Sbjct: 28 GIPVPNNLKRDKGWVGMLLERALGATAGSKPEQDFSHLGVELKTIPINSEGYPLETTFVC 87 Query: 118 IPPLTENNPVNW 129 + PLT N+ V W Sbjct: 88 VAPLTNNSGVTW 99 >gnl|CDD|185671 PTZ00494, PTZ00494, tuzin-like protein; Provisional. Length = 664 Score = 27.4 bits (60), Expect = 2.3 Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 15/81 (18%) Query: 103 LPISSEDVVLYYYACIPPLTENNPVNWLLHRAPDLYLYGLVEEI------------ALWE 150 L +SS + Y CIPP + + H L L VE + AL + Sbjct: 516 LNVSSRRLDFY---CIPPFSRRQAFAYAEHTLDALDLVCFVEVVGTRSSDVDELCAALRQ 572 Query: 151 QKIDKATTASALFQESIKKLQ 171 + +D T S + ++++LQ Sbjct: 573 RGVDPVTYTSLMLARAMRRLQ 593 >gnl|CDD|139038 PRK12526, PRK12526, RNA polymerase sigma factor; Provisional. Length = 206 Score = 26.3 bits (58), Expect = 4.3 Identities = 10/30 (33%), Positives = 17/30 (56%) Query: 3 KDFASLLIDVSHYVEKGGFTYLFKNFLHRI 32 + + LI V+ +K FT+LF+ F +I Sbjct: 22 TELSQWLILVAISRDKQAFTHLFQFFAPKI 51 >gnl|CDD|130427 TIGR01360, aden_kin_iso1, adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351. Length = 188 Score = 25.9 bits (57), Expect = 5.7 Identities = 34/128 (26%), Positives = 49/128 (38%), Gaps = 32/128 (25%) Query: 16 VEKGGFTYLFKNFLHRIEVK--INRALRLRE-MER------KIVLSLVEGSAPLPDDYIE 66 VEK GFT+L L R EV R +L+ ME VL L++ + Sbjct: 24 VEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAM-------- 75 Query: 67 IRFLEDNKGNKLDHLPLSISLQKNKGYIITADSICVLPISSEDVVLYYYACIPPLTENNP 126 + L +KG +D P + +G I +VLY+ +E+ Sbjct: 76 VAALGTSKGFLIDGYP----REVKQGEEFERR------IGPPTLVLYFDC-----SEDTM 120 Query: 127 VNWLLHRA 134 V LL RA Sbjct: 121 VKRLLKRA 128 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.321 0.139 0.409 Gapped Lambda K H 0.267 0.0626 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 2,973,691 Number of extensions: 184991 Number of successful extensions: 352 Number of sequences better than 10.0: 1 Number of HSP's gapped: 351 Number of HSP's successfully gapped: 11 Length of query: 178 Length of database: 5,994,473 Length adjustment: 87 Effective length of query: 91 Effective length of database: 4,114,577 Effective search space: 374426507 Effective search space used: 374426507 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 54 (24.8 bits)