RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254781138|ref|YP_003065551.1| hypothetical protein
CLIBASIA_05200 [Candidatus Liberibacter asiaticus str. psy62]
         (178 letters)



>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA
          synthetase class II, ligase; 3.23A {Methanococcus
          maripaludis S2} (A:550-614)
          Length = 65

 Score = 26.3 bits (57), Expect = 2.9
 Identities = 5/10 (50%), Positives = 6/10 (60%), Gaps = 4/10 (40%)

Query: 27 NFLHRIEVKI 36
          N    +EVKI
Sbjct: 1  N----VEVKI 6


>2pqg_A Ribosome-inactivating protein 3; Pro-RIP, maize, hydrolase;
           2.38A {Zea mays} PDB: 2pqi_A 2pqj_A* 2k6h_A (A:)
          Length = 265

 Score = 25.8 bits (56), Expect = 3.4
 Identities = 6/40 (15%), Positives = 12/40 (30%)

Query: 26  KNFLHRIEVKINRALRLREMERKIVLSLVEGSAPLPDDYI 65
           K+ L ++ V +   LR   + R +                
Sbjct: 174 KSKLVKLVVMVCEGLRFNTVSRTVDAGFNSQHGVTLTVTQ 213


>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA
          synthetase class II, ligase; 3.23A {Methanococcus
          maripaludis S2} (B:550-611)
          Length = 62

 Score = 25.9 bits (56), Expect = 3.8
 Identities = 5/10 (50%), Positives = 6/10 (60%), Gaps = 4/10 (40%)

Query: 27 NFLHRIEVKI 36
          N    +EVKI
Sbjct: 1  N----VEVKI 6


>2vc4_A Ricin A chain; glycoprotein, plant defense, protein
           synthesis inhibitor, toxin, lectin, hydrolase,
           glycosidase; 1.39A {Ricinus communis} PDB: 2vc3_A 2pjo_A
           1rtc_A 1br6_A* 2pjn_A 2p8n_A 2r2x_A 2r3d_A 1br5_A*
           1apg_A* 1fmp_A* 1il3_A* 1il4_A* 1il5_A* 1il9_A* 2aai_A*
           1j1m_A* 1obs_A 1obt_A* 3bjg_A ... (A:)
          Length = 267

 Score = 25.8 bits (56), Expect = 4.0
 Identities = 8/55 (14%), Positives = 17/55 (30%)

Query: 11  DVSHYVEKGGFTYLFKNFLHRIEVKINRALRLREMERKIVLSLVEGSAPLPDDYI 65
            + +Y   G                I+ A R + +E ++   +       PD  +
Sbjct: 150 ALYYYSTGGTQLPTLARSFIICIQMISDAARFQYIEGEMRTRIRYNRRSAPDPSV 204


>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase,
           isomerase; HET: FAD; 2.40A {Escherichia coli}
           (A:1-79,A:181-237,A:333-367)
          Length = 171

 Score = 25.7 bits (56), Expect = 4.0
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 18  KGGFTYLFKNFLHRIEVKIN 37
            GG+T L +  L  ++VK+ 
Sbjct: 90  VGGYTKLIEKMLEGVDVKLG 109


>2fr7_A CYP199A2, putative cytochrome P450; P450 family protein
           fold, oxidoreductase; HET: HEM; 2.01A {Rhodopseudomonas
           palustris CGA009} (A:1-87,A:297-348)
          Length = 139

 Score = 24.9 bits (54), Expect = 6.4
 Identities = 6/34 (17%), Positives = 11/34 (32%), Gaps = 1/34 (2%)

Query: 105 ISSEDVVLYYYACIPPLTENNPVNWLLHRAPDLY 138
            ++ DV L     I    +        +R P  +
Sbjct: 95  TTTRDVELAGA-TIGEGEKVLMFLGSANRDPRRW 127


>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET:
           FAD BCN; 2.25A {Mycobacterium tuberculosis}
           (A:1-85,A:181-251,A:332-399)
          Length = 224

 Score = 24.9 bits (54), Expect = 7.1
 Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 2/22 (9%)

Query: 18  KGGFTYLFKNFL--HRIEVKIN 37
             G+T   +N    HRIEV++N
Sbjct: 106 TDGYTAWLQNMAADHRIEVRLN 127


>2jjn_A Cytochrome P450 113A1; oxidoreductase, iron, heme,
           monooxygenase, metal-binding, antibiotic biosynthesis;
           HET: HEM; 1.59A {Saccharopolyspora erythraea} PDB:
           2jjo_A* 2jjp_A* 2wio_A* 2vrv_A* (A:1-78,A:287-339)
          Length = 131

 Score = 24.4 bits (53), Expect = 8.7
 Identities = 5/34 (14%), Positives = 11/34 (32%), Gaps = 1/34 (2%)

Query: 105 ISSEDVVLYYYACIPPLTENNPVNWLLHRAPDLY 138
            +++   +     IP     N      +R  D +
Sbjct: 86  TTTKATEVAGV-PIPADVMVNTWVLSANRDSDAH 118


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.321    0.139    0.409 

Gapped
Lambda     K      H
   0.267   0.0664    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,373,118
Number of extensions: 61545
Number of successful extensions: 145
Number of sequences better than 10.0: 1
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 11
Length of query: 178
Length of database: 4,956,049
Length adjustment: 83
Effective length of query: 95
Effective length of database: 2,150,234
Effective search space: 204272230
Effective search space used: 204272230
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (23.9 bits)