RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254781138|ref|YP_003065551.1| hypothetical protein CLIBASIA_05200 [Candidatus Liberibacter asiaticus str. psy62] (178 letters) >2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2} (A:550-614) Length = 65 Score = 26.3 bits (57), Expect = 2.9 Identities = 5/10 (50%), Positives = 6/10 (60%), Gaps = 4/10 (40%) Query: 27 NFLHRIEVKI 36 N +EVKI Sbjct: 1 N----VEVKI 6 >2pqg_A Ribosome-inactivating protein 3; Pro-RIP, maize, hydrolase; 2.38A {Zea mays} PDB: 2pqi_A 2pqj_A* 2k6h_A (A:) Length = 265 Score = 25.8 bits (56), Expect = 3.4 Identities = 6/40 (15%), Positives = 12/40 (30%) Query: 26 KNFLHRIEVKINRALRLREMERKIVLSLVEGSAPLPDDYI 65 K+ L ++ V + LR + R + Sbjct: 174 KSKLVKLVVMVCEGLRFNTVSRTVDAGFNSQHGVTLTVTQ 213 >2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2} (B:550-611) Length = 62 Score = 25.9 bits (56), Expect = 3.8 Identities = 5/10 (50%), Positives = 6/10 (60%), Gaps = 4/10 (40%) Query: 27 NFLHRIEVKI 36 N +EVKI Sbjct: 1 N----VEVKI 6 >2vc4_A Ricin A chain; glycoprotein, plant defense, protein synthesis inhibitor, toxin, lectin, hydrolase, glycosidase; 1.39A {Ricinus communis} PDB: 2vc3_A 2pjo_A 1rtc_A 1br6_A* 2pjn_A 2p8n_A 2r2x_A 2r3d_A 1br5_A* 1apg_A* 1fmp_A* 1il3_A* 1il4_A* 1il5_A* 1il9_A* 2aai_A* 1j1m_A* 1obs_A 1obt_A* 3bjg_A ... (A:) Length = 267 Score = 25.8 bits (56), Expect = 4.0 Identities = 8/55 (14%), Positives = 17/55 (30%) Query: 11 DVSHYVEKGGFTYLFKNFLHRIEVKINRALRLREMERKIVLSLVEGSAPLPDDYI 65 + +Y G I+ A R + +E ++ + PD + Sbjct: 150 ALYYYSTGGTQLPTLARSFIICIQMISDAARFQYIEGEMRTRIRYNRRSAPDPSV 204 >1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} (A:1-79,A:181-237,A:333-367) Length = 171 Score = 25.7 bits (56), Expect = 4.0 Identities = 7/20 (35%), Positives = 12/20 (60%) Query: 18 KGGFTYLFKNFLHRIEVKIN 37 GG+T L + L ++VK+ Sbjct: 90 VGGYTKLIEKMLEGVDVKLG 109 >2fr7_A CYP199A2, putative cytochrome P450; P450 family protein fold, oxidoreductase; HET: HEM; 2.01A {Rhodopseudomonas palustris CGA009} (A:1-87,A:297-348) Length = 139 Score = 24.9 bits (54), Expect = 6.4 Identities = 6/34 (17%), Positives = 11/34 (32%), Gaps = 1/34 (2%) Query: 105 ISSEDVVLYYYACIPPLTENNPVNWLLHRAPDLY 138 ++ DV L I + +R P + Sbjct: 95 TTTRDVELAGA-TIGEGEKVLMFLGSANRDPRRW 127 >1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} (A:1-85,A:181-251,A:332-399) Length = 224 Score = 24.9 bits (54), Expect = 7.1 Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 2/22 (9%) Query: 18 KGGFTYLFKNFL--HRIEVKIN 37 G+T +N HRIEV++N Sbjct: 106 TDGYTAWLQNMAADHRIEVRLN 127 >2jjn_A Cytochrome P450 113A1; oxidoreductase, iron, heme, monooxygenase, metal-binding, antibiotic biosynthesis; HET: HEM; 1.59A {Saccharopolyspora erythraea} PDB: 2jjo_A* 2jjp_A* 2wio_A* 2vrv_A* (A:1-78,A:287-339) Length = 131 Score = 24.4 bits (53), Expect = 8.7 Identities = 5/34 (14%), Positives = 11/34 (32%), Gaps = 1/34 (2%) Query: 105 ISSEDVVLYYYACIPPLTENNPVNWLLHRAPDLY 138 +++ + IP N +R D + Sbjct: 86 TTTKATEVAGV-PIPADVMVNTWVLSANRDSDAH 118 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.321 0.139 0.409 Gapped Lambda K H 0.267 0.0664 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,373,118 Number of extensions: 61545 Number of successful extensions: 145 Number of sequences better than 10.0: 1 Number of HSP's gapped: 145 Number of HSP's successfully gapped: 11 Length of query: 178 Length of database: 4,956,049 Length adjustment: 83 Effective length of query: 95 Effective length of database: 2,150,234 Effective search space: 204272230 Effective search space used: 204272230 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 52 (23.9 bits)