RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254781138|ref|YP_003065551.1| hypothetical protein
CLIBASIA_05200 [Candidatus Liberibacter asiaticus str. psy62]
(178 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 44.5 bits (105), Expect = 1e-05
Identities = 39/242 (16%), Positives = 66/242 (27%), Gaps = 92/242 (38%)
Query: 4 DFASL--LIDVSHYVEKGGFTYLFKNFLHRIEVKIN---RALRLREMERKIVLSLVEGSA 58
D S L +SH G H + V A +L+E + L E +
Sbjct: 2 DAYSTRPLT-LSH----GSLE-------HVLLVPTASFFIASQLQE---QFNKILPEPTE 46
Query: 59 PLPDDY-----IEI--RFL--------EDNKGNKLDHLPLSIS------LQKNKGYIITA 97
D E+ +FL G L L ++ L+ N + + A
Sbjct: 47 GFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAA 106
Query: 98 --DSICVLPISSEDVVL--YYYACI---PPLTENNPVNWLLHRAPD----LY-------- 138
+ ++ Y A I P + + + L + L
Sbjct: 107 KLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSN-SALFRAVGEGNAQLVAIFGGQGN 165
Query: 139 ----------LY----GLVEEIALWEQKIDKATTASALFQE------SIKKL--QQNDIR 176
LY LV ++ I ++ E +K+ Q +I
Sbjct: 166 TDDYFEELRDLYQTYHVLVGDL------IK---FSAETLSELIRTTLDAEKVFTQGLNIL 216
Query: 177 SW 178
W
Sbjct: 217 EW 218
Score = 31.8 bits (72), Expect = 0.096
Identities = 29/189 (15%), Positives = 50/189 (26%), Gaps = 90/189 (47%)
Query: 29 LHRIEV-----KINRALRLREMERKIVLSLVEGSAPLPDDYIEI-----------RFLED 72
L + +V K N L +++ +SLV G + + + L
Sbjct: 344 LTQEQVQDYVNKTNS--HLPA-GKQVEISLVNG----AKNLV-VSGPPQSLYGLNLTLRK 395
Query: 73 NK-GNKLD--HLPLSISLQKNKGYIITADSICVLPISS---------------EDVVLYY 114
K + LD +P S + K LP++S +D+V
Sbjct: 396 AKAPSGLDQSRIPFS----ERKLKFSNR----FLPVASPFHSHLLVPASDLINKDLV-KN 446
Query: 115 YACIPP------------------LTENNPVNWLLHRAPDLYLYGLVEEIAL----WEQK 152
L+ + + R +V+ I WE
Sbjct: 447 NVSFNAKDIQIPVYDTFDGSDLRVLSGS-----ISER--------IVDCIIRLPVKWE-- 491
Query: 153 IDKATTASA 161
T A
Sbjct: 492 --TTTQFKA 498
>2zr1_A Agglutinin-1 chain A; ribosome-inactivating protein, immunotoxin,
agglutinin abrin, glycoprotein, hydrolase, lectin, plant
defense; HET: NAG; 2.60A {Abrus precatorius} PDB:
2q3n_A*
Length = 258
Score = 27.6 bits (61), Expect = 1.6
Identities = 22/124 (17%), Positives = 41/124 (33%), Gaps = 12/124 (9%)
Query: 5 FASLLIDVSHYVEKGGFTYLFKNFLHRIEVKINRALRLREMERKIVLSLVEGSAPLPDDY 64
+L + L I + A R R + + +V+SL +A PD
Sbjct: 130 LEALRQGIKFLRSGASDDEEIARTLIVIIQMVAEAARFRYVSKLVVISLSNRAAFQPDPS 189
Query: 65 IEIRFLEDN--------KGNKLDHLPLSISLQKNKGYIITADSICVLPISSEDVVLYYYA 116
+ LE+ + D P +++L + + S + S + L +
Sbjct: 190 --MLSLENTWEPLSRAVQHTVQDTFPQNVTLINVRQERVVVSS--LSHPSVSALALMLFV 245
Query: 117 CIPP 120
C P
Sbjct: 246 CNPL 249
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.2 bits (59), Expect = 2.4
Identities = 9/39 (23%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 144 EEIALW--EQK--IDKATTASALFQESIKKLQQNDIRSW 178
E I W EQ+ + + AS + ++ ++ + D+ W
Sbjct: 85 ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEW 123
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding,
nucleotide-binding, diacylglycerol binding,
serine/threonine-protein kinase, transferase; 1.75A
{Homo sapiens}
Length = 157
Score = 26.4 bits (57), Expect = 4.2
Identities = 12/54 (22%), Positives = 22/54 (40%)
Query: 16 VEKGGFTYLFKNFLHRIEVKINRALRLREMERKIVLSLVEGSAPLPDDYIEIRF 69
V +G + F + V+I A+ L+ + SL + L D Y+ +
Sbjct: 15 VPRGSMSSGTMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSV 68
>1abr_A Abrin-A; complex (glycosidase/carbohydrate); HET: NAG NGZ MAN BMA
BGC; 2.14A {} SCOP: d.165.1.1
Length = 251
Score = 25.7 bits (56), Expect = 6.0
Identities = 25/124 (20%), Positives = 47/124 (37%), Gaps = 12/124 (9%)
Query: 5 FASLLIDVSHYVEKGGFTYLFKNFLHRIEVKINRALRLREMERKIVLSLVEGSAPLPDDY 64
+L +S + G L I + A R R + ++ +S+ G+A PD
Sbjct: 131 LQALTHGISFFRSGGNDNEEKARTLIVIIQMVAEAARFRYISNRVRVSIQTGTAFQPDAA 190
Query: 65 IEIRFLEDN--------KGNKLDHLPLSISLQKNKGYIITADSICVLPISSEDVVLYYYA 116
+ LE+N + + D P ++L + + DS + + + L +
Sbjct: 191 --MISLENNWDNLSRGVQESVQDTFPNQVTLTNIRNEPVIVDS--LSHPTVAVLALMLFV 246
Query: 117 CIPP 120
C PP
Sbjct: 247 CNPP 250
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.7 bits (55), Expect = 6.2
Identities = 4/8 (50%), Positives = 8/8 (100%)
Query: 164 QESIKKLQ 171
++++KKLQ
Sbjct: 19 KQALKKLQ 26
>1oo2_A Transthyretin; retinol-binding protein, tetramer, transport
protein; 1.56A {Sparus aurata} SCOP: b.3.4.1 PDB: 1sn2_A
1sn0_A 1sn5_A*
Length = 119
Score = 25.1 bits (55), Expect = 8.3
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 63 DYIEIRFLEDNKGNKLDHLPLSIS 86
+ E+ F +G+ L L +S
Sbjct: 81 EVAEVVFDAHPEGHGHYTLALLLS 104
>2h4e_A Transthyretin; amyloid, sulfite, familial amyloidotic
polyneuropathy, transport protein; HET: CSU; 1.45A {Homo
sapiens} SCOP: b.3.4.1 PDB: 1zcr_A 1zd6_A 2trh_A 1bz8_A
2qpf_A 1tfp_A
Length = 127
Score = 25.2 bits (55), Expect = 8.6
Identities = 4/24 (16%), Positives = 12/24 (50%)
Query: 63 DYIEIRFLEDNKGNKLDHLPLSIS 86
++ E+ F ++ G + + +S
Sbjct: 89 EHAEVVFTANDSGPRRYTIAALLS 112
>2qed_A Hydroxyacylglutathione hydrolase; metallo-B- lactamase superfamily;
1.45A {Salmonella typhimurium LT2} SCOP: d.157.1.2
Length = 258
Score = 25.2 bits (54), Expect = 9.4
Identities = 8/41 (19%), Positives = 16/41 (39%)
Query: 33 EVKINRALRLREMERKIVLSLVEGSAPLPDDYIEIRFLEDN 73
E KIN LR +++ ++ + +R +D
Sbjct: 217 ERKINLFLRTEDIDLINEINKETILQQPEARFAWLRSKKDT 257
>3mnf_A PAC2 family protein; PSI2, MCSG, structural genomics, protein
structure initiativ midwest center for structural
genomics; 2.97A {Streptomyces avermitilis}
Length = 250
Score = 25.1 bits (54), Expect = 9.8
Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 141 GLVEEIALWEQKIDKATTASALFQESIKKL-QQND 174
L E+ W+ +D+ + E ++ L + D
Sbjct: 214 ELPEDARAWQVGVDQLAAEDSEVAEYVQSLEEARD 248
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.321 0.139 0.409
Gapped
Lambda K H
0.267 0.0669 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,573,999
Number of extensions: 72605
Number of successful extensions: 199
Number of sequences better than 10.0: 1
Number of HSP's gapped: 197
Number of HSP's successfully gapped: 20
Length of query: 178
Length of database: 5,693,230
Length adjustment: 86
Effective length of query: 92
Effective length of database: 3,608,246
Effective search space: 331958632
Effective search space used: 331958632
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.3 bits)