RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254781138|ref|YP_003065551.1| hypothetical protein
CLIBASIA_05200 [Candidatus Liberibacter asiaticus str. psy62]
(178 letters)
>d1a41a_ d.163.1.2 (A:) Eukaryotic DNA topoisomerase I, catalytic
core {Vaccinia virus [TaxId: 10245]}
Length = 230
Score = 27.9 bits (62), Expect = 0.49
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 25 FKNFLHRIEVKINRALRLREMERKIVLSLV 54
N + RI IN+ ++ + L++
Sbjct: 11 VYNVMKRINCFINKNIKKSSTDSNYQLAVF 40
>d2gtta1 a.260.1.1 (A:6-448) Nucleoprotein {Rabies virus [TaxId:
11292]}
Length = 443
Score = 26.0 bits (57), Expect = 2.0
Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 3/71 (4%)
Query: 60 LPDDYIEIRFLEDNKGNK-LDHLPLSISLQKNKGYIITADSICVLPISSEDVVLYYYACI 118
+ D E ++ K L + L K +++ S L +DV Y A +
Sbjct: 16 IIVDQHEYKYPAIKDLKKPCITLGKAPDLNKAYKSVLSGMSAAKLDP--DDVCSYLAAAM 73
Query: 119 PPLTENNPVNW 129
P +W
Sbjct: 74 QFFEGTCPEDW 84
>d1oo2a_ b.3.4.1 (A:) Transthyretin (synonym: prealbumin) {Gilthead
seabream (Sparus aurata) [TaxId: 8175]}
Length = 116
Score = 25.5 bits (56), Expect = 3.0
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 63 DYIEIRFLEDNKGNKLDHLPLSIS 86
+ E+ F +G+ L L +S
Sbjct: 81 EVAEVVFDAHPEGHGHYTLALLLS 104
>d1gnta_ e.26.1.1 (A:) Hybrid cluster protein (prismane protein)
{Desulfovibrio vulgaris [TaxId: 881]}
Length = 553
Score = 25.1 bits (55), Expect = 3.4
Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 2/64 (3%)
Query: 2 AKDFASLLIDVSHYVEKGGFTYLFK-NF-LHRIEVKINRALRLREMERKIVLSLVEGSAP 59
K+ +V +G F + N+ R E I+ L R+ R L++ +
Sbjct: 48 LKELGQPDRSNDDFVLQGLFATITNANWDDARFEAMISEGLARRDKLRNAFLAVYKAKNG 107
Query: 60 LPDD 63
Sbjct: 108 KDFS 111
>d1oy5a_ c.116.1.4 (A:) tRNA(m1G37)-methyltransferase TrmD {Aquifex
aeolicus [TaxId: 63363]}
Length = 232
Score = 24.9 bits (54), Expect = 4.0
Identities = 10/52 (19%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
Query: 125 NPVNWLLHRAPDLYLYGLVEEIALWEQKIDKATTASA---LFQESIKKLQQN 173
P + + P+ L G + I LW+ T L + + +L+++
Sbjct: 181 RPREYRGMKVPEELLSGHHKLIELWKLWHRIENTVKKRPDLIPKDLTELEKD 232
>d1ggpa_ d.165.1.1 (A:) Lectin 1 A-chain {Mongolian snake-gourd
(Trichosanthes kirilowii) [TaxId: 3677]}
Length = 234
Score = 24.4 bits (53), Expect = 5.1
Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 8/68 (11%)
Query: 25 FKNFLHRIEVKINRALRLREMERKIVLSLVEGSAPLPDDYIEIRFLEDNKGNKLDHLPLS 84
L I + A R R ++ + +S+ SA D + LE+N LS
Sbjct: 134 LARTLMVIIQMLVEAARFRYIQNNVDVSIETQSAFAADAA--MISLENNWA------NLS 185
Query: 85 ISLQKNKG 92
+Q + G
Sbjct: 186 ALVQGSSG 193
>d1f86a_ b.3.4.1 (A:) Transthyretin (synonym: prealbumin) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 115
Score = 24.4 bits (53), Expect = 5.2
Identities = 4/24 (16%), Positives = 12/24 (50%)
Query: 63 DYIEIRFLEDNKGNKLDHLPLSIS 86
++ E+ F ++ G + + +S
Sbjct: 80 EHAEVVFTANDSGPRRYTIAALLS 103
>d5csma_ a.130.1.2 (A:) Allosteric chorismate mutase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 256
Score = 24.3 bits (53), Expect = 6.1
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 105 ISSEDVVLYYYACIPPLTENNPVNWLLHRAPD 136
IS E +V Y + P+T+ V +LL R +
Sbjct: 225 ISPEYLVKIYKEIVIPITKEVEVEYLLRRLEE 256
>d1abra_ d.165.1.1 (A:) Abrin A-chain {Abrus precatorius [TaxId:
3816]}
Length = 251
Score = 24.1 bits (52), Expect = 7.3
Identities = 22/103 (21%), Positives = 41/103 (39%), Gaps = 12/103 (11%)
Query: 26 KNFLHRIEVKINRALRLREMERKIVLSLVEGSAPLPDDYIEIRFLEDN--------KGNK 77
L I + A R R + ++ +S+ G+A PD + LE+N + +
Sbjct: 152 ARTLIVIIQMVAEAARFRYISNRVRVSIQTGTAFQPDAA--MISLENNWDNLSRGVQESV 209
Query: 78 LDHLPLSISLQKNKGYIITADSICVLPISSEDVVLYYYACIPP 120
D P ++L + + DS + + + L + C PP
Sbjct: 210 QDTFPNQVTLTNIRNEPVIVDS--LSHPTVAVLALMLFVCNPP 250
>d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54
(NtrC1), N-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 137
Score = 23.8 bits (51), Expect = 7.9
Identities = 10/39 (25%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 11 DVSHYVEKGGFTYLFKNF-LHRIEVKINRALRLREMERK 48
++ G + +L K L IE+ IN+A+ R++ ++
Sbjct: 86 TAVEAMKMGAYDFLTKPCMLEEIELTINKAIEHRKLRKE 124
>d2qeda1 d.157.1.2 (A:1-251) Glyoxalase II (hydroxyacylglutathione
hydrolase) {Salmonella typhimurium [TaxId: 90371]}
Length = 251
Score = 23.7 bits (50), Expect = 8.6
Identities = 8/41 (19%), Positives = 16/41 (39%)
Query: 33 EVKINRALRLREMERKIVLSLVEGSAPLPDDYIEIRFLEDN 73
E KIN LR +++ ++ + +R +D
Sbjct: 210 ERKINLFLRTEDIDLINEINKETILQQPEARFAWLRSKKDT 250
>d1uala_ c.116.1.4 (A:) tRNA(m1G37)-methyltransferase TrmD
{Haemophilus influenzae [TaxId: 727]}
Length = 252
Score = 23.7 bits (51), Expect = 9.5
Identities = 9/35 (25%), Positives = 11/35 (31%)
Query: 125 NPVNWLLHRAPDLYLYGLVEEIALWEQKIDKATTA 159
P P + + G EEI W K T
Sbjct: 185 RPEVLEGLTVPPVLMSGHHEEIRKWRLKQSLQRTW 219
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.139 0.409
Gapped
Lambda K H
0.267 0.0667 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 684,332
Number of extensions: 31877
Number of successful extensions: 91
Number of sequences better than 10.0: 1
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 15
Length of query: 178
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 98
Effective length of database: 1,309,196
Effective search space: 128301208
Effective search space used: 128301208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.2 bits)