BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781138|ref|YP_003065551.1| hypothetical protein
CLIBASIA_05200 [Candidatus Liberibacter asiaticus str. psy62]
         (178 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781138|ref|YP_003065551.1| hypothetical protein CLIBASIA_05200 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 178

 Score =  365 bits (938), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 178/178 (100%), Positives = 178/178 (100%)

Query: 1   MAKDFASLLIDVSHYVEKGGFTYLFKNFLHRIEVKINRALRLREMERKIVLSLVEGSAPL 60
           MAKDFASLLIDVSHYVEKGGFTYLFKNFLHRIEVKINRALRLREMERKIVLSLVEGSAPL
Sbjct: 1   MAKDFASLLIDVSHYVEKGGFTYLFKNFLHRIEVKINRALRLREMERKIVLSLVEGSAPL 60

Query: 61  PDDYIEIRFLEDNKGNKLDHLPLSISLQKNKGYIITADSICVLPISSEDVVLYYYACIPP 120
           PDDYIEIRFLEDNKGNKLDHLPLSISLQKNKGYIITADSICVLPISSEDVVLYYYACIPP
Sbjct: 61  PDDYIEIRFLEDNKGNKLDHLPLSISLQKNKGYIITADSICVLPISSEDVVLYYYACIPP 120

Query: 121 LTENNPVNWLLHRAPDLYLYGLVEEIALWEQKIDKATTASALFQESIKKLQQNDIRSW 178
           LTENNPVNWLLHRAPDLYLYGLVEEIALWEQKIDKATTASALFQESIKKLQQNDIRSW
Sbjct: 121 LTENNPVNWLLHRAPDLYLYGLVEEIALWEQKIDKATTASALFQESIKKLQQNDIRSW 178


>gi|254780214|ref|YP_003064627.1| metal-dependent hydrolase protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 271

 Score = 23.1 bits (48), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 7/63 (11%)

Query: 119 PPLTENNPVNWLLHRA-------PDLYLYGLVEEIALWEQKIDKATTASALFQESIKKLQ 171
           P + ENN V   +  A       P L  +G +  +      +   T  +A   ES++KLQ
Sbjct: 140 PIVIENNDVPICMKSAGGVIEAIPILQQHGRISSLGFRFGNVAYCTDVNAFPAESLEKLQ 199

Query: 172 QND 174
             D
Sbjct: 200 NLD 202


>gi|254781033|ref|YP_003065446.1| HemY domain-containing protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 492

 Score = 23.1 bits (48), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 11/20 (55%), Positives = 15/20 (75%)

Query: 35  KINRALRLREMERKIVLSLV 54
           K+ RALRL E+ ++ V SLV
Sbjct: 310 KLKRALRLEEINKESVESLV 329


>gi|254780772|ref|YP_003065185.1| surface antigen (D15) [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 781

 Score = 21.9 bits (45), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 10/35 (28%), Positives = 21/35 (60%), Gaps = 5/35 (14%)

Query: 3   KDFASLLIDVSHYVEKGGFTYLFKNFLHRIEVKIN 37
           +DFA  ++D+ + +++G   Y     + RIE++ N
Sbjct: 346 RDFAKRIVDIEYLIDQGSPLY-----VKRIEIEGN 375


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.321    0.139    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 121,861
Number of Sequences: 1233
Number of extensions: 5088
Number of successful extensions: 13
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 8
length of query: 178
length of database: 328,796
effective HSP length: 68
effective length of query: 110
effective length of database: 244,952
effective search space: 26944720
effective search space used: 26944720
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 35 (18.1 bits)