Query gi|254781139|ref|YP_003065552.1| hypothetical protein CLIBASIA_05205 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 65 No_of_seqs 3 out of 5 Neff 1.5 Searched_HMMs 23785 Date Wed Jun 1 01:17:35 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781139.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1g1t_A E-selectin; EGF, adhesi 9.1 1.1E+02 0.0047 13.6 1.5 29 30-58 22-50 (157) 2 3pbf_A Pulmonary surfactant-as 7.2 1E+02 0.0044 13.7 0.7 30 29-58 57-86 (148) 3 1pwb_A SP-D, PSP-D, pulmonary 6.7 1.1E+02 0.0048 13.5 0.7 32 28-59 84-115 (177) 4 2ywd_A Glutamine amidotransfer 6.6 1.3E+02 0.0055 13.2 1.0 17 35-51 169-187 (191) 5 1c7s_A Beta-N-acetylhexosamini 6.5 76 0.0032 14.5 -0.3 11 5-15 727-737 (858) 6 1vzj_A Acetylcholinesterase; h 5.8 78 0.0033 14.4 -0.6 15 9-23 5-19 (40) 7 3cfw_A L-selectin; EGF, cell a 5.8 1.8E+02 0.0075 12.5 1.5 31 29-59 21-51 (164) 8 1cmb_A Met APO-repressor; DNA- 5.6 1.1E+02 0.0046 13.6 0.1 11 21-31 25-35 (104) 9 3bgk_A SMU.573, putative uncha 5.0 2E+02 0.0084 12.3 1.4 23 42-64 38-60 (311) 10 2pny_A Isopentenyl-diphosphate 5.0 59 0.0025 15.0 -1.6 38 14-51 65-102 (246) No 1 >1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A Probab=9.06 E-value=1.1e+02 Score=13.58 Aligned_cols=29 Identities=17% Similarity=0.379 Sum_probs=22.8 Q ss_pred CCCCEEEEECCCCHHHHHHHHCCCCCCEE Q ss_conf 05681201125407899997026664100 Q gi|254781139|r 30 KDSHLLQAHTEGDDVWVNKWLNNRDNASW 58 (65) Q Consensus 30 h~~~LvqAHsEGDD~~VkrwLNn~DNraW 58 (65) .+++|+..+++....|+.+.|...+...| T Consensus 22 ~gg~La~i~s~~e~~~i~~~l~~~~~~~W 50 (157) T 1g1t_A 22 RYTHLVAIQNKEEIEYLNSILSYSPSYYW 50 (157) T ss_dssp HSSEECCCCSHHHHHHHHHHSCCCTTCEE T ss_pred CCCEEEEECCHHHHHHHHHHHCCCCEEEE T ss_conf 89989177899998998754235530688 No 2 >3pbf_A Pulmonary surfactant-associated protein A; collectin, carbohydrate binding, lectin, mannose, sugar BIND protein; 1.80A {Rattus norvegicus} PDB: 1r14_A* 1r13_A* 3paq_A* 3par_A 3pak_A Probab=7.15 E-value=1e+02 Score=13.74 Aligned_cols=30 Identities=7% Similarity=0.083 Sum_probs=23.4 Q ss_pred HCCCCEEEEECCCCHHHHHHHHCCCCCCEE Q ss_conf 205681201125407899997026664100 Q gi|254781139|r 29 LKDSHLLQAHTEGDDVWVNKWLNNRDNASW 58 (65) Q Consensus 29 ah~~~LvqAHsEGDD~~VkrwLNn~DNraW 58 (65) .++.+|+.-+++.+..++.+++....+..| T Consensus 57 ~~Gg~La~i~s~~e~~~l~~~~~~~~~~~W 86 (148) T 3pbf_A 57 RAGGNIAVPRTPEENEAIASIAKKYNNYVY 86 (148) T ss_dssp HTTCEECCCCSHHHHHHHHHHHHHHTSCEE T ss_pred HCCCEECEECCHHHHHHHHHHHCCCCCCEE T ss_conf 589998505899999999987625798478 No 3 >1pwb_A SP-D, PSP-D, pulmonary surfactant-associated protein D; collectin, C-type lectin, alpha-helical coiled coil, carbohydrate recognition domain; HET: GLC; 1.40A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1 PDB: 1pw9_A* 3ikn_A* 3ikp_A* 3ikq_A* 3ikr_A* 2rie_A* 2ggx_A* 2ggu_A* 2ork_A* 2orj_A* 2ria_A* 2rib_A* 2ric_A* 2rid_A* 2os9_A* 3dbz_A 3g81_A* 3g83_A* 1b08_A 3g84_A* ... Probab=6.72 E-value=1.1e+02 Score=13.55 Aligned_cols=32 Identities=6% Similarity=0.207 Sum_probs=25.4 Q ss_pred HHCCCCEEEEECCCCHHHHHHHHCCCCCCEEH Q ss_conf 22056812011254078999970266641000 Q gi|254781139|r 28 ILKDSHLLQAHTEGDDVWVNKWLNNRDNASWR 59 (65) Q Consensus 28 vah~~~LvqAHsEGDD~~VkrwLNn~DNraWR 59 (65) ...+.+|+.-+++-+..|+...+.+..+..|- T Consensus 84 ~~~gg~La~i~s~~e~~~l~~~~~~~~~~~Wi 115 (177) T 1pwb_A 84 TQAGGQLASPRSAAENAALQQLVVAKNEAAFL 115 (177) T ss_dssp HHTTSEECCCCSHHHHHHHHHHHHHHTCCEEC T ss_pred HHCCCEEEEECCHHHHHHHHHHHCCCCCEEEE T ss_conf 87799893774599987877653157742898 No 4 >2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus HB8} Probab=6.60 E-value=1.3e+02 Score=13.21 Aligned_cols=17 Identities=24% Similarity=0.212 Sum_probs=13.0 Q ss_pred EEEECC--CCHHHHHHHHC Q ss_conf 201125--40789999702 Q gi|254781139|r 35 LQAHTE--GDDVWVNKWLN 51 (65) Q Consensus 35 vqAHsE--GDD~~VkrwLN 51 (65) +|=|-| ||+|+.+.||+ T Consensus 169 ~QFHPE~s~~~~~~~~Fl~ 187 (191) T 2ywd_A 169 SSFHPELTEDPRLHRYFLE 187 (191) T ss_dssp ESSCGGGSSCCHHHHHHHH T ss_pred EEECCEECCCCHHHHHHHH T ss_conf 9879821598389999999 No 5 >1c7s_A Beta-N-acetylhexosaminidase; glycosyl hydrolase, chitinolysis, A/B(TIM)-barrel, site directed mutagenesis; HET: CBS; 1.80A {Serratia marcescens} SCOP: b.1.18.2 b.2.2.3 c.1.8.6 d.92.2.1 PDB: 1c7t_A* 1qba_A 1qbb_A* Probab=6.45 E-value=76 Score=14.46 Aligned_cols=11 Identities=27% Similarity=0.302 Sum_probs=8.6 Q ss_pred HHHHHHHHHHH Q ss_conf 65666666431 Q gi|254781139|r 5 QACAMATRKKN 15 (65) Q Consensus 5 qacama~r~~~ 15 (65) .++|+|||+|. T Consensus 727 Rl~AlAEraWs 737 (858) T 1c7s_A 727 RALSVAERSWH 737 (858) T ss_dssp HHHHHHHHHHC T ss_pred HHHHHHHHHHC T ss_conf 89999998768 No 6 >1vzj_A Acetylcholinesterase; hydrolase, signal, synapse, neurotransmitter degradation, alternative splicing, disease mutation.; 2.35A {Homo sapiens} Probab=5.83 E-value=78 Score=14.41 Aligned_cols=15 Identities=27% Similarity=0.377 Sum_probs=10.9 Q ss_pred HHHHHHHCCEEEEHH Q ss_conf 666643154100010 Q gi|254781139|r 9 MATRKKNRDWQRIAS 23 (65) Q Consensus 9 ma~r~~~~dW~rvAS 23 (65) -|||.||-+.+|-.+ T Consensus 5 EaEr~WK~eFhrWs~ 19 (40) T 1vzj_A 5 EAERQWKAEFHRWSS 19 (40) T ss_dssp THHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHH T ss_conf 999999999989999 No 7 >3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein, membrane, polymorphism, sushi, transmembrane; HET: NAG MAN BMA; 2.20A {Homo sapiens} Probab=5.79 E-value=1.8e+02 Score=12.52 Aligned_cols=31 Identities=13% Similarity=0.171 Sum_probs=23.7 Q ss_pred HCCCCEEEEECCCCHHHHHHHHCCCCCCEEH Q ss_conf 2056812011254078999970266641000 Q gi|254781139|r 29 LKDSHLLQAHTEGDDVWVNKWLNNRDNASWR 59 (65) Q Consensus 29 ah~~~LvqAHsEGDD~~VkrwLNn~DNraWR 59 (65) ..+++|+.-+++-+..|+...+...+...|- T Consensus 21 ~~gg~La~i~s~~e~~fl~~~~~~~~~~~Wi 51 (164) T 3cfw_A 21 DNYTDLVAIQNKAEIEYLEKTLPFSRSYYWI 51 (164) T ss_dssp HHSSEECCCCSHHHHHHHHHHSCCCTTCEEE T ss_pred HCCCEECEECCHHHHHHHHHHHCCCCEEEEE T ss_conf 7899886168899999998762455204774 No 8 >1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A* Probab=5.62 E-value=1.1e+02 Score=13.64 Aligned_cols=11 Identities=45% Similarity=0.658 Sum_probs=8.4 Q ss_pred EHHCCHHHHCC Q ss_conf 01000422205 Q gi|254781139|r 21 IASIPVSILKD 31 (65) Q Consensus 21 vASiPlnvah~ 31 (65) ..|||++|++- T Consensus 25 TVsIP~kVLki 35 (104) T 1cmb_A 25 TVSIPLKVLKI 35 (104) T ss_dssp EEEEEHHHHHH T ss_pred EEEEEHHHHHH T ss_conf 67610899999 No 9 >3bgk_A SMU.573, putative uncharacterized protein; alpha/beta three layer sandwich, unknown function; 2.50A {Streptococcus mutans} Probab=5.05 E-value=2e+02 Score=12.26 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=14.8 Q ss_pred CHHHHHHHHCCCCCCEEHHCCCC Q ss_conf 07899997026664100002376 Q gi|254781139|r 42 DDVWVNKWLNNRDNASWRTSEGY 64 (65) Q Consensus 42 DD~~VkrwLNn~DNraWRt~EG~ 64 (65) ||..||++|..|+..+-.-+-|+ T Consensus 38 ~~~~~k~~l~~R~~~sHKg~~G~ 60 (311) T 3bgk_A 38 DDLLTKKIIKPRPLNSHKGTFGR 60 (311) T ss_dssp CHHHHHHHSCCCCSSCCSSTTCE T ss_pred CHHHHHHHCCCCCCCCCCCCCCE T ss_conf 89999983699999888877882 No 10 >2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isoprene biosynthesis, lipid synthesis, peroxisome; HET: GOL; 1.81A {Homo sapiens} Probab=4.95 E-value=59 Score=15.01 Aligned_cols=38 Identities=13% Similarity=0.140 Sum_probs=31.2 Q ss_pred HHCCEEEEHHCCHHHHCCCCEEEEECCCCHHHHHHHHC Q ss_conf 31541000100042220568120112540789999702 Q gi|254781139|r 14 KNRDWQRIASIPVSILKDSHLLQAHTEGDDVWVNKWLN 51 (65) Q Consensus 14 ~~~dW~rvASiPlnvah~~~LvqAHsEGDD~~VkrwLN 51 (65) .+|.|||..||=+--..+.-|+|--|..-+.|-..|-| T Consensus 65 ~~Gl~HRa~~v~v~n~~g~lLLQrRs~~K~~~Pg~wd~ 102 (246) T 2pny_A 65 EKGLLHRAFSVVLFNTKNRILIQQRSDTKVTFPGYFTD 102 (246) T ss_dssp TTTCCEEEEEEEEECTTCCEEEEEECTTCSSSTTCBCC T ss_pred CCCCEEEEEEEEEEECCCCEEEEECCCCCCCCCCCEEC T ss_conf 57965889999999689979999648998789985631 Done!