BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781139|ref|YP_003065552.1| hypothetical protein
CLIBASIA_05205 [Candidatus Liberibacter asiaticus str. psy62]
         (65 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781139|ref|YP_003065552.1| hypothetical protein CLIBASIA_05205 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 65

 Score =  136 bits (342), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 65/65 (100%), Positives = 65/65 (100%)

Query: 1  MEINQACAMATRKKNRDWQRIASIPVSILKDSHLLQAHTEGDDVWVNKWLNNRDNASWRT 60
          MEINQACAMATRKKNRDWQRIASIPVSILKDSHLLQAHTEGDDVWVNKWLNNRDNASWRT
Sbjct: 1  MEINQACAMATRKKNRDWQRIASIPVSILKDSHLLQAHTEGDDVWVNKWLNNRDNASWRT 60

Query: 61 SEGYV 65
          SEGYV
Sbjct: 61 SEGYV 65


>gi|254780277|ref|YP_003064690.1| DNA polymerase I [Candidatus Liberibacter asiaticus str. psy62]
          Length = 976

 Score = 23.5 bits (49), Expect = 0.69,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 20  RIASIPVSILKDSHLLQAHTEGDDVWVNKWL 50
           R +SIP+  + DS + +   E  +V +  WL
Sbjct: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWL 554


>gi|254781170|ref|YP_003065583.1| deoxyribodipyrimidine photolyase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 483

 Score = 21.6 bits (44), Expect = 2.9,   Method: Composition-based stats.
 Identities = 9/12 (75%), Positives = 10/12 (83%)

Query: 30  KDSHLLQAHTEG 41
           KDSHLLQA  +G
Sbjct: 318 KDSHLLQAWKQG 329


>gi|254780283|ref|YP_003064696.1| thioredoxin reductase (NADPH) protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 321

 Score = 20.4 bits (41), Expect = 6.5,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 17/37 (45%)

Query: 9   MATRKKNRDWQRIASIPVSILKDSHLLQAHTEGDDVW 45
           M  + +N   + I  + VS+  D H     T+  D+W
Sbjct: 68  MRQQAENFGTKIIQDLVVSVDLDRHPFLVETQSGDLW 104


>gi|254780523|ref|YP_003064936.1| flagellar hook-associated protein FlgL [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 357

 Score = 20.0 bits (40), Expect = 7.2,   Method: Composition-based stats.
 Identities = 6/14 (42%), Positives = 8/14 (57%)

Query: 42  DDVWVNKWLNNRDN 55
           D+ W N W N  D+
Sbjct: 207 DEYWANNWSNASDH 220


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.316    0.127    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,169
Number of Sequences: 1233
Number of extensions: 1357
Number of successful extensions: 6
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 65
length of database: 328,796
effective HSP length: 36
effective length of query: 29
effective length of database: 284,408
effective search space:  8247832
effective search space used:  8247832
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.2 bits)
S2: 31 (16.5 bits)