Query gi|254781140|ref|YP_003065553.1| hypothetical protein CLIBASIA_05210 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 44 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed Jun 1 22:52:46 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781140.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1hdh_A Arylsulfatase; hydrola 61.6 5.5 0.00016 21.9 2.3 27 2-28 23-49 (92) 2 >2qzu_A Putative sulfatase YID 46.9 19 0.00056 19.0 3.1 28 2-29 21-48 (97) 3 >1w6s_A Methanol dehydrogenase 40.1 20 0.00059 18.8 2.4 17 8-24 97-113 (134) 4 >2q5x_A Nuclear pore complex p 37.4 21 0.00062 18.7 2.1 15 8-22 129-143 (155) 5 >2aiv_A NUP116P, fragment of n 36.8 26 0.00076 18.2 2.5 15 8-22 126-140 (149) 6 >1ko6_A Nuclear pore complex p 33.6 21 0.00061 18.7 1.6 15 8-22 168-182 (187) 7 >3kep_A Nucleoporin NUP145; nu 33.0 27 0.00081 18.0 2.1 15 8-22 147-161 (174) 8 >2rd7_A Complement component C 32.7 15 0.00044 19.5 0.7 19 2-20 8-26 (39) 9 >2hz6_A Endoplasmic reticulum 25.6 52 0.0015 16.5 2.5 19 9-27 54-72 (117) 10 >1w6s_A Methanol dehydrogenase 25.1 38 0.0011 17.3 1.7 22 6-27 17-41 (49) 11 >1kb0_A Quinohemoprotein alcoh 25.0 62 0.0018 16.1 2.8 13 7-19 34-46 (160) 12 >1flg_A Protein (quinoprotein 24.9 50 0.0015 16.6 2.3 17 8-24 92-108 (155) 13 >2q4a_A Clavaminate synthase-l 22.5 23 0.00067 18.5 0.2 13 11-23 24-36 (85) 14 >1yiq_A Quinohemoprotein alcoh 21.9 70 0.0021 15.8 2.6 20 7-27 30-49 (94) 15 >1mby_A SAK, serine/threonine 21.5 53 0.0016 16.4 1.9 40 3-42 29-76 (88) 16 >2ecf_A Dipeptidyl peptidase I 20.7 61 0.0018 16.1 2.0 20 6-25 28-47 (54) 17 >2ad6_A Methanol dehydrogenase 20.2 71 0.0021 15.7 2.3 20 7-27 23-42 (84) 18 >1kb0_A Quinohemoprotein alcoh 20.2 77 0.0023 15.5 2.5 20 7-27 11-30 (80) 19 >3c5b_A Putative uncharacteriz 20.2 45 0.0013 16.8 1.3 10 16-25 21-30 (82) No 1 >>1hdh_A Arylsulfatase; hydrolase, formylglycine hydrate; 1.3A {Pseudomonas aeruginosa} (A:445-536) Probab=61.57 E-value=5.5 Score=21.94 Aligned_cols=27 Identities=26% Similarity=0.612 Sum_probs=20.1 Q ss_pred CEECCCEEEEEECCCCCCEEEEEECCC Q ss_conf 401572778876588885899997084 Q gi|254781140|r 2 DIYDGSWKLISYDPETGRTVWYMLDNQ 28 (44) Q Consensus 2 diydgswklisydpetgrtvwymldnq 28 (44) -|..|.||||.+.+..+...|.+.|-+ T Consensus 23 aiR~g~wKli~~~~~~~~~~~eLydl~ 49 (92) T 1hdh_A 23 AIRQGDWKAVYLPAPVGPATWQLYDLA 49 (92) T ss_dssp EEEETTEEEEECCTTTSCSSEEEEETT T ss_pred EEEECCEEEEEECCCCCCCCEECCCCC T ss_conf 999699889983267899973683088 No 2 >>2qzu_A Putative sulfatase YIDJ; Q64XZ4_bacfr, arylsulfatase, BFR123, NESG, structural genomics, PSI-2, protein structure initiative; 1.70A {Bacteroides fragilis YCH46} (A:395-491) Probab=46.86 E-value=19 Score=18.96 Aligned_cols=28 Identities=4% Similarity=0.052 Sum_probs=20.2 Q ss_pred CEECCCEEEEEECCCCCCEEEEEECCCC Q ss_conf 4015727788765888858999970841 Q gi|254781140|r 2 DIYDGSWKLISYDPETGRTVWYMLDNQK 29 (44) Q Consensus 2 diydgswklisydpetgrtvwymldnqk 29 (44) -|.+|.||||.+....+..-|...|..+ T Consensus 21 air~g~wKli~~~~~~~~~~~eLydl~~ 48 (97) T 2qzu_A 21 GLRTDRYTYAVHATDGKIDNVILFDRTN 48 (97) T ss_dssp EEECSSEEEEEEEETTEEEEEEEEETTT T ss_pred EEEECCEEEEEECCCCCCCCCCCCCCCC T ss_conf 9995998899978889989686843785 No 3 >>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} (A:1-16,A:102-219) Probab=40.15 E-value=20 Score=18.80 Aligned_cols=17 Identities=41% Similarity=0.684 Sum_probs=8.8 Q ss_pred EEEEEECCCCCCEEEEE Q ss_conf 77887658888589999 Q gi|254781140|r 8 WKLISYDPETGRTVWYM 24 (44) Q Consensus 8 wklisydpetgrtvwym 24 (44) -.+..||++||..+|-- T Consensus 97 G~v~A~D~~tG~~~W~~ 113 (134) T 1w6s_A 97 GYLTAYDVKTGEQVWRA 113 (134) T ss_dssp CEEEEEETTTCCEEEEE T ss_pred CCEEEEECCCCCEEEEE T ss_conf 73399876888288887 No 4 >>2q5x_A Nuclear pore complex protein NUP98; nucleoporin, autoproteolysis, precursor, protein transport; 1.90A {Homo sapiens} PDB: 2q5y_A (A:) Probab=37.45 E-value=21 Score=18.68 Aligned_cols=15 Identities=40% Similarity=0.647 Sum_probs=11.6 Q ss_pred EEEEEECCCCCCEEE Q ss_conf 778876588885899 Q gi|254781140|r 8 WKLISYDPETGRTVW 22 (44) Q Consensus 8 wklisydpetgrtvw 22 (44) -+.|||||+||-=+. T Consensus 129 ~~FisYd~~tG~W~F 143 (155) T 2q5x_A 129 AQFKEYRPETGSWVF 143 (155) T ss_dssp CEEEEEETTTTEEEE T ss_pred CEEEEEECCCCEEEE T ss_conf 989878479878999 No 5 >>2aiv_A NUP116P, fragment of nucleoporin NUP116/NSP116; beta sandwich, transport protein; NMR {Saccharomyces cerevisiae} (A:) Probab=36.78 E-value=26 Score=18.20 Aligned_cols=15 Identities=40% Similarity=0.665 Sum_probs=11.7 Q ss_pred EEEEEECCCCCCEEE Q ss_conf 778876588885899 Q gi|254781140|r 8 WKLISYDPETGRTVW 22 (44) Q Consensus 8 wklisydpetgrtvw 22 (44) -+.|||||+||--+. T Consensus 126 ~~FisYd~~tG~W~F 140 (149) T 2aiv_A 126 SKFESYDADSGTYVF 140 (149) T ss_dssp SEEEEECTTTCCEEE T ss_pred CEEEEEECCCCEEEE T ss_conf 989978479978999 No 6 >>1ko6_A Nuclear pore complex protein NUP98; nucleoporin, autoproteolysis, transferase; 3.00A {Homo sapiens} (A:) Probab=33.60 E-value=21 Score=18.73 Aligned_cols=15 Identities=40% Similarity=0.647 Sum_probs=11.3 Q ss_pred EEEEEECCCCCCEEE Q ss_conf 778876588885899 Q gi|254781140|r 8 WKLISYDPETGRTVW 22 (44) Q Consensus 8 wklisydpetgrtvw 22 (44) -++|||||+||.-+. T Consensus 168 ~~FisYd~~tG~W~F 182 (187) T 1ko6_A 168 AQFKEYRPETGSWVF 182 (187) T ss_dssp CEEEEEEGGGTEEEE T ss_pred CEEEEEECCCCEEEE T ss_conf 989878479868999 No 7 >>3kep_A Nucleoporin NUP145; nuclear pore complex, NUP145-N,yeast, autoproteolysis, protein maturation, post-translational modification; 1.82A {Saccharomyces cerevisiae} PDB: 3kes_A* (A:) Probab=33.02 E-value=27 Score=18.04 Aligned_cols=15 Identities=33% Similarity=0.580 Sum_probs=11.5 Q ss_pred EEEEEECCCCCCEEE Q ss_conf 778876588885899 Q gi|254781140|r 8 WKLISYDPETGRTVW 22 (44) Q Consensus 8 wklisydpetgrtvw 22 (44) -+.|||||+||.-+. T Consensus 147 ~~FisYd~~tG~W~F 161 (174) T 3kep_A 147 XNYISYNPFGGTWTF 161 (174) T ss_dssp SEEEEEETTTTEEEE T ss_pred CEEEEEECCCCEEEE T ss_conf 989988579968999 No 8 >>2rd7_A Complement component C8 alpha chain; membrane attack system, cleavage on PAIR of basic residues, complement alternate pathway, complement pathway; 2.15A {Homo sapiens} PDB: 2qqh_A (A:47-85) Probab=32.68 E-value=15 Score=19.51 Aligned_cols=19 Identities=32% Similarity=0.903 Sum_probs=16.3 Q ss_pred CEECCCEEEEEECCCCCCE Q ss_conf 4015727788765888858 Q gi|254781140|r 2 DIYDGSWKLISYDPETGRT 20 (44) Q Consensus 2 diydgswklisydpetgrt 20 (44) -+|.|.|+-+.|||.--|- T Consensus 8 ~vYNGeWr~lrydp~CE~L 26 (39) T 2rd7_A 8 TVYNGEWRELRYDSTCERL 26 (39) T ss_dssp EEEECSSCCEEEETTTTEE T ss_pred EEECCCCEECCCCCCCHHC T ss_conf 6606741012456541001 No 9 >>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} (A:1-38,A:169-247) Probab=25.65 E-value=52 Score=16.51 Aligned_cols=19 Identities=21% Similarity=0.490 Sum_probs=14.1 Q ss_pred EEEEECCCCCCEEEEEECC Q ss_conf 7887658888589999708 Q gi|254781140|r 9 KLISYDPETGRTVWYMLDN 27 (44) Q Consensus 9 klisydpetgrtvwymldn 27 (44) .+..+|++||+.+|-.-.. T Consensus 54 ~l~a~D~~TG~~~W~~~~~ 72 (117) T 2hz6_A 54 LVVTVDSESGDVLWIQNYA 72 (117) T ss_dssp EEEEECTTTCCEEEEEECS T ss_pred EEEEEECCCCCEEEEEECC T ss_conf 4999989999356788479 No 10 >>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} (A:53-101) Probab=25.13 E-value=38 Score=17.27 Aligned_cols=22 Identities=14% Similarity=0.335 Sum_probs=16.7 Q ss_pred CCE--EEEEECC-CCCCEEEEEECC Q ss_conf 727--7887658-888589999708 Q gi|254781140|r 6 GSW--KLISYDP-ETGRTVWYMLDN 27 (44) Q Consensus 6 gsw--klisydp-etgrtvwymldn 27 (44) .+| +++..|+ +||+..|-.--. T Consensus 17 tp~~n~v~AlD~A~TG~~~W~ydp~ 41 (49) T 1w6s_A 17 TSFPNNTFALGLDDPGTILWQDKPK 41 (49) T ss_dssp CSTTTCEEEEETTCTTSEEEEECCC T ss_pred ECCCCCEEEEECCCCCCEEEECCCC T ss_conf 0789958999479998678862487 No 11 >>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} (A:32-48,A:378-520) Probab=25.01 E-value=62 Score=16.07 Aligned_cols=13 Identities=38% Similarity=1.066 Sum_probs=6.9 Q ss_pred CEEEEEECCCCCC Q ss_conf 2778876588885 Q gi|254781140|r 7 SWKLISYDPETGR 19 (44) Q Consensus 7 swklisydpetgr 19 (44) .|--+||||+||- T Consensus 34 NW~~~AyDP~Tgl 46 (160) T 1kb0_A 34 NWHPMSFNPQTGL 46 (160) T ss_dssp CSSCCEEETTTTE T ss_pred CCCCCCCCCCCCE T ss_conf 7777637677886 No 12 >>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} (A:21-38,A:393-529) Probab=24.93 E-value=50 Score=16.58 Aligned_cols=17 Identities=35% Similarity=0.655 Sum_probs=8.9 Q ss_pred EEEEEECCCCCCEEEEE Q ss_conf 77887658888589999 Q gi|254781140|r 8 WKLISYDPETGRTVWYM 24 (44) Q Consensus 8 wklisydpetgrtvwym 24 (44) -.|+.+||.||+.+|.. T Consensus 92 G~l~A~D~~tgk~~W~~ 108 (155) T 1flg_A 92 GSLRAMDPVSGKVVWEH 108 (155) T ss_dssp EEEEEECTTTCCEEEEE T ss_pred EEEEEECCCCCCEEEEC T ss_conf 59999917889787105 No 13 >>2q4a_A Clavaminate synthase-like protein AT3G21360; ensemble refinement, refinement methodology development, structural genomics; 2.39A {Arabidopsis thaliana} (A:153-173,A:234-297) Probab=22.55 E-value=23 Score=18.48 Aligned_cols=13 Identities=46% Similarity=1.127 Sum_probs=11.3 Q ss_pred EEECCCCCCEEEE Q ss_conf 8765888858999 Q gi|254781140|r 11 ISYDPETGRTVWY 23 (44) Q Consensus 11 isydpetgrtvwy 23 (44) |...|.||+.||+ T Consensus 24 v~~HP~TGe~VWF 36 (85) T 2q4a_A 24 IKYDESRNRKVWF 36 (85) T ss_dssp SEEETTTTEEECC T ss_pred EEECCCCCCCEEE T ss_conf 8978986533254 No 14 >>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} (A:207-300) Probab=21.88 E-value=70 Score=15.76 Aligned_cols=20 Identities=30% Similarity=0.730 Sum_probs=11.1 Q ss_pred CEEEEEECCCCCCEEEEEECC Q ss_conf 277887658888589999708 Q gi|254781140|r 7 SWKLISYDPETGRTVWYMLDN 27 (44) Q Consensus 7 swklisydpetgrtvwymldn 27 (44) .|--+|||||+|. |.+-.-| T Consensus 30 ~W~~~s~D~~~~l-vy~~tGn 49 (94) T 1yiq_A 30 AWDSFAYDPELNL-LYIGVGN 49 (94) T ss_dssp CCSCEEEETTTTE-EEEECCC T ss_pred CCCCCCCCCCCCC-EEECCCC T ss_conf 2344421203585-1323556 No 15 >>1mby_A SAK, serine/threonine kinase; POLO domain, strand exchange, transferase; 2.00A {Mus musculus} (A:) Probab=21.50 E-value=53 Score=16.43 Aligned_cols=40 Identities=28% Similarity=0.415 Sum_probs=29.4 Q ss_pred EECCCEEE-------EEECCCCCCEEEEE-ECCCCHHHHHHHHCCCCC Q ss_conf 01572778-------87658888589999-708410222321004454 Q gi|254781140|r 3 IYDGSWKL-------ISYDPETGRTVWYM-LDNQKRCVSDRLSCIPSY 42 (44) Q Consensus 3 iydgswkl-------isydpetgrtvwym-ldnqkrcvsdrlscipsy 42 (44) .+|||--+ |.|.+-.|.+.-|- -|+--.-|-+||+|+|+. T Consensus 29 f~DGSql~~~~~~~~I~Yt~~~G~~t~y~~~d~LP~~vreKL~~lp~i 76 (88) T 1mby_A 29 FNDGSQLVMQAGVSSISYTSPDGQTTRYGENEKLPEYIKQKLQLLSSI 76 (88) T ss_dssp ETTSCEEEEEEEEEEEEEECTTSCEEEEETTSCCCHHHHHHHTTTCCE T ss_pred ECCCCEEEEEECCCEEEEECCCCCEEECCCCCCCCHHHHHHHHCCHHH T ss_conf 758878999608865999889996066786454449999998513088 No 16 >>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} (A:283-336) Probab=20.68 E-value=61 Score=16.11 Aligned_cols=20 Identities=5% Similarity=-0.016 Sum_probs=14.6 Q ss_pred CCEEEEEECCCCCCEEEEEE Q ss_conf 72778876588885899997 Q gi|254781140|r 6 GSWKLISYDPETGRTVWYML 25 (44) Q Consensus 6 gswklisydpetgrtvwyml 25 (44) -..+|+.+||.||++-=-+- T Consensus 28 n~~~l~~~d~~tG~~~~l~~ 47 (54) T 2ecf_A 28 KKLDLVEVTLASNQQRVLAH 47 (54) T ss_dssp SEEEEEEEETTTCCEEEEEE T ss_pred CCCCEEEECCCCCCEEEEEE T ss_conf 10010464044474234430 No 17 >>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoreductase; HET: PQQ; 1.50A {Methylophilus methylotrophus W3A1} (A:214-297) Probab=20.23 E-value=71 Score=15.72 Aligned_cols=20 Identities=30% Similarity=0.703 Sum_probs=10.8 Q ss_pred CEEEEEECCCCCCEEEEEECC Q ss_conf 277887658888589999708 Q gi|254781140|r 7 SWKLISYDPETGRTVWYMLDN 27 (44) Q Consensus 7 swklisydpetgrtvwymldn 27 (44) .|--+|||||+|. |..-..| T Consensus 23 ~W~~~s~D~~~~l-vy~~tGN 42 (84) T 2ad6_A 23 NWGWYAYDPKLNL-FYYGSGN 42 (84) T ss_dssp CCSCCEEETTTTE-EEEECCC T ss_pred CCCCCCCCHHHCE-EEEECCC T ss_conf 1146213542085-5553134 No 18 >>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} (A:234-313) Probab=20.22 E-value=77 Score=15.52 Aligned_cols=20 Identities=20% Similarity=0.526 Sum_probs=10.1 Q ss_pred CEEEEEECCCCCCEEEEEECC Q ss_conf 277887658888589999708 Q gi|254781140|r 7 SWKLISYDPETGRTVWYMLDN 27 (44) Q Consensus 7 swklisydpetgrtvwymldn 27 (44) .|--.|||||+|. |.+-..| T Consensus 11 ~W~~~s~D~~~~l-vy~~tGn 30 (80) T 1kb0_A 11 MWDSMTFDAELNT-MYVGTGN 30 (80) T ss_dssp CCSCEEEETTTTE-EEEECCC T ss_pred CCCCEEECCCCCE-EEECCCC T ss_conf 3243017423481-7743688 No 19 >>3c5b_A Putative uncharacterized protein; capsid protein, HK97 fold, icosahedral virus; 4.50A {Enterobacteria phage EPSILON15} (A:254-335) Probab=20.15 E-value=45 Score=16.81 Aligned_cols=10 Identities=30% Similarity=0.471 Sum_probs=8.2 Q ss_pred CCCCEEEEEE Q ss_conf 8885899997 Q gi|254781140|r 16 ETGRTVWYML 25 (44) Q Consensus 16 etgrtvwyml 25 (44) --||+||||- T Consensus 21 ~~gr~v~Y~N 30 (82) T 3c5b_A 21 GDGKEVIYAN 30 (82) T ss_pred CCCCEEEEEC T ss_conf 7886799978 Done!