Query         gi|254781140|ref|YP_003065553.1| hypothetical protein CLIBASIA_05210 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 44
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Wed Jun  1 22:52:46 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781140.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >1hdh_A Arylsulfatase; hydrola  61.6     5.5 0.00016   21.9   2.3   27    2-28     23-49  (92)
  2 >2qzu_A Putative sulfatase YID  46.9      19 0.00056   19.0   3.1   28    2-29     21-48  (97)
  3 >1w6s_A Methanol dehydrogenase  40.1      20 0.00059   18.8   2.4   17    8-24     97-113 (134)
  4 >2q5x_A Nuclear pore complex p  37.4      21 0.00062   18.7   2.1   15    8-22    129-143 (155)
  5 >2aiv_A NUP116P, fragment of n  36.8      26 0.00076   18.2   2.5   15    8-22    126-140 (149)
  6 >1ko6_A Nuclear pore complex p  33.6      21 0.00061   18.7   1.6   15    8-22    168-182 (187)
  7 >3kep_A Nucleoporin NUP145; nu  33.0      27 0.00081   18.0   2.1   15    8-22    147-161 (174)
  8 >2rd7_A Complement component C  32.7      15 0.00044   19.5   0.7   19    2-20      8-26  (39)
  9 >2hz6_A Endoplasmic reticulum   25.6      52  0.0015   16.5   2.5   19    9-27     54-72  (117)
 10 >1w6s_A Methanol dehydrogenase  25.1      38  0.0011   17.3   1.7   22    6-27     17-41  (49)
 11 >1kb0_A Quinohemoprotein alcoh  25.0      62  0.0018   16.1   2.8   13    7-19     34-46  (160)
 12 >1flg_A Protein (quinoprotein   24.9      50  0.0015   16.6   2.3   17    8-24     92-108 (155)
 13 >2q4a_A Clavaminate synthase-l  22.5      23 0.00067   18.5   0.2   13   11-23     24-36  (85)
 14 >1yiq_A Quinohemoprotein alcoh  21.9      70  0.0021   15.8   2.6   20    7-27     30-49  (94)
 15 >1mby_A SAK, serine/threonine   21.5      53  0.0016   16.4   1.9   40    3-42     29-76  (88)
 16 >2ecf_A Dipeptidyl peptidase I  20.7      61  0.0018   16.1   2.0   20    6-25     28-47  (54)
 17 >2ad6_A Methanol dehydrogenase  20.2      71  0.0021   15.7   2.3   20    7-27     23-42  (84)
 18 >1kb0_A Quinohemoprotein alcoh  20.2      77  0.0023   15.5   2.5   20    7-27     11-30  (80)
 19 >3c5b_A Putative uncharacteriz  20.2      45  0.0013   16.8   1.3   10   16-25     21-30  (82)

No 1  
>>1hdh_A Arylsulfatase; hydrolase, formylglycine hydrate; 1.3A {Pseudomonas aeruginosa} (A:445-536)
Probab=61.57  E-value=5.5  Score=21.94  Aligned_cols=27  Identities=26%  Similarity=0.612  Sum_probs=20.1

Q ss_pred             CEECCCEEEEEECCCCCCEEEEEECCC
Q ss_conf             401572778876588885899997084
Q gi|254781140|r    2 DIYDGSWKLISYDPETGRTVWYMLDNQ   28 (44)
Q Consensus         2 diydgswklisydpetgrtvwymldnq   28 (44)
                      -|..|.||||.+.+..+...|.+.|-+
T Consensus        23 aiR~g~wKli~~~~~~~~~~~eLydl~   49 (92)
T 1hdh_A           23 AIRQGDWKAVYLPAPVGPATWQLYDLA   49 (92)
T ss_dssp             EEEETTEEEEECCTTTSCSSEEEEETT
T ss_pred             EEEECCEEEEEECCCCCCCCEECCCCC
T ss_conf             999699889983267899973683088


No 2  
>>2qzu_A Putative sulfatase YIDJ; Q64XZ4_bacfr, arylsulfatase, BFR123, NESG, structural genomics, PSI-2, protein structure initiative; 1.70A {Bacteroides fragilis YCH46} (A:395-491)
Probab=46.86  E-value=19  Score=18.96  Aligned_cols=28  Identities=4%  Similarity=0.052  Sum_probs=20.2

Q ss_pred             CEECCCEEEEEECCCCCCEEEEEECCCC
Q ss_conf             4015727788765888858999970841
Q gi|254781140|r    2 DIYDGSWKLISYDPETGRTVWYMLDNQK   29 (44)
Q Consensus         2 diydgswklisydpetgrtvwymldnqk   29 (44)
                      -|.+|.||||.+....+..-|...|..+
T Consensus        21 air~g~wKli~~~~~~~~~~~eLydl~~   48 (97)
T 2qzu_A           21 GLRTDRYTYAVHATDGKIDNVILFDRTN   48 (97)
T ss_dssp             EEECSSEEEEEEEETTEEEEEEEEETTT
T ss_pred             EEEECCEEEEEECCCCCCCCCCCCCCCC
T ss_conf             9995998899978889989686843785


No 3  
>>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} (A:1-16,A:102-219)
Probab=40.15  E-value=20  Score=18.80  Aligned_cols=17  Identities=41%  Similarity=0.684  Sum_probs=8.8

Q ss_pred             EEEEEECCCCCCEEEEE
Q ss_conf             77887658888589999
Q gi|254781140|r    8 WKLISYDPETGRTVWYM   24 (44)
Q Consensus         8 wklisydpetgrtvwym   24 (44)
                      -.+..||++||..+|--
T Consensus        97 G~v~A~D~~tG~~~W~~  113 (134)
T 1w6s_A           97 GYLTAYDVKTGEQVWRA  113 (134)
T ss_dssp             CEEEEEETTTCCEEEEE
T ss_pred             CCEEEEECCCCCEEEEE
T ss_conf             73399876888288887


No 4  
>>2q5x_A Nuclear pore complex protein NUP98; nucleoporin, autoproteolysis, precursor, protein transport; 1.90A {Homo sapiens} PDB: 2q5y_A (A:)
Probab=37.45  E-value=21  Score=18.68  Aligned_cols=15  Identities=40%  Similarity=0.647  Sum_probs=11.6

Q ss_pred             EEEEEECCCCCCEEE
Q ss_conf             778876588885899
Q gi|254781140|r    8 WKLISYDPETGRTVW   22 (44)
Q Consensus         8 wklisydpetgrtvw   22 (44)
                      -+.|||||+||-=+.
T Consensus       129 ~~FisYd~~tG~W~F  143 (155)
T 2q5x_A          129 AQFKEYRPETGSWVF  143 (155)
T ss_dssp             CEEEEEETTTTEEEE
T ss_pred             CEEEEEECCCCEEEE
T ss_conf             989878479878999


No 5  
>>2aiv_A NUP116P, fragment of nucleoporin NUP116/NSP116; beta sandwich, transport protein; NMR {Saccharomyces cerevisiae} (A:)
Probab=36.78  E-value=26  Score=18.20  Aligned_cols=15  Identities=40%  Similarity=0.665  Sum_probs=11.7

Q ss_pred             EEEEEECCCCCCEEE
Q ss_conf             778876588885899
Q gi|254781140|r    8 WKLISYDPETGRTVW   22 (44)
Q Consensus         8 wklisydpetgrtvw   22 (44)
                      -+.|||||+||--+.
T Consensus       126 ~~FisYd~~tG~W~F  140 (149)
T 2aiv_A          126 SKFESYDADSGTYVF  140 (149)
T ss_dssp             SEEEEECTTTCCEEE
T ss_pred             CEEEEEECCCCEEEE
T ss_conf             989978479978999


No 6  
>>1ko6_A Nuclear pore complex protein NUP98; nucleoporin, autoproteolysis, transferase; 3.00A {Homo sapiens} (A:)
Probab=33.60  E-value=21  Score=18.73  Aligned_cols=15  Identities=40%  Similarity=0.647  Sum_probs=11.3

Q ss_pred             EEEEEECCCCCCEEE
Q ss_conf             778876588885899
Q gi|254781140|r    8 WKLISYDPETGRTVW   22 (44)
Q Consensus         8 wklisydpetgrtvw   22 (44)
                      -++|||||+||.-+.
T Consensus       168 ~~FisYd~~tG~W~F  182 (187)
T 1ko6_A          168 AQFKEYRPETGSWVF  182 (187)
T ss_dssp             CEEEEEEGGGTEEEE
T ss_pred             CEEEEEECCCCEEEE
T ss_conf             989878479868999


No 7  
>>3kep_A Nucleoporin NUP145; nuclear pore complex, NUP145-N,yeast, autoproteolysis, protein maturation, post-translational modification; 1.82A {Saccharomyces cerevisiae} PDB: 3kes_A* (A:)
Probab=33.02  E-value=27  Score=18.04  Aligned_cols=15  Identities=33%  Similarity=0.580  Sum_probs=11.5

Q ss_pred             EEEEEECCCCCCEEE
Q ss_conf             778876588885899
Q gi|254781140|r    8 WKLISYDPETGRTVW   22 (44)
Q Consensus         8 wklisydpetgrtvw   22 (44)
                      -+.|||||+||.-+.
T Consensus       147 ~~FisYd~~tG~W~F  161 (174)
T 3kep_A          147 XNYISYNPFGGTWTF  161 (174)
T ss_dssp             SEEEEEETTTTEEEE
T ss_pred             CEEEEEECCCCEEEE
T ss_conf             989988579968999


No 8  
>>2rd7_A Complement component C8 alpha chain; membrane attack system, cleavage on PAIR of basic residues, complement alternate pathway, complement pathway; 2.15A {Homo sapiens} PDB: 2qqh_A (A:47-85)
Probab=32.68  E-value=15  Score=19.51  Aligned_cols=19  Identities=32%  Similarity=0.903  Sum_probs=16.3

Q ss_pred             CEECCCEEEEEECCCCCCE
Q ss_conf             4015727788765888858
Q gi|254781140|r    2 DIYDGSWKLISYDPETGRT   20 (44)
Q Consensus         2 diydgswklisydpetgrt   20 (44)
                      -+|.|.|+-+.|||.--|-
T Consensus         8 ~vYNGeWr~lrydp~CE~L   26 (39)
T 2rd7_A            8 TVYNGEWRELRYDSTCERL   26 (39)
T ss_dssp             EEEECSSCCEEEETTTTEE
T ss_pred             EEECCCCEECCCCCCCHHC
T ss_conf             6606741012456541001


No 9  
>>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} (A:1-38,A:169-247)
Probab=25.65  E-value=52  Score=16.51  Aligned_cols=19  Identities=21%  Similarity=0.490  Sum_probs=14.1

Q ss_pred             EEEEECCCCCCEEEEEECC
Q ss_conf             7887658888589999708
Q gi|254781140|r    9 KLISYDPETGRTVWYMLDN   27 (44)
Q Consensus         9 klisydpetgrtvwymldn   27 (44)
                      .+..+|++||+.+|-.-..
T Consensus        54 ~l~a~D~~TG~~~W~~~~~   72 (117)
T 2hz6_A           54 LVVTVDSESGDVLWIQNYA   72 (117)
T ss_dssp             EEEEECTTTCCEEEEEECS
T ss_pred             EEEEEECCCCCEEEEEECC
T ss_conf             4999989999356788479


No 10 
>>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} (A:53-101)
Probab=25.13  E-value=38  Score=17.27  Aligned_cols=22  Identities=14%  Similarity=0.335  Sum_probs=16.7

Q ss_pred             CCE--EEEEECC-CCCCEEEEEECC
Q ss_conf             727--7887658-888589999708
Q gi|254781140|r    6 GSW--KLISYDP-ETGRTVWYMLDN   27 (44)
Q Consensus         6 gsw--klisydp-etgrtvwymldn   27 (44)
                      .+|  +++..|+ +||+..|-.--.
T Consensus        17 tp~~n~v~AlD~A~TG~~~W~ydp~   41 (49)
T 1w6s_A           17 TSFPNNTFALGLDDPGTILWQDKPK   41 (49)
T ss_dssp             CSTTTCEEEEETTCTTSEEEEECCC
T ss_pred             ECCCCCEEEEECCCCCCEEEECCCC
T ss_conf             0789958999479998678862487


No 11 
>>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} (A:32-48,A:378-520)
Probab=25.01  E-value=62  Score=16.07  Aligned_cols=13  Identities=38%  Similarity=1.066  Sum_probs=6.9

Q ss_pred             CEEEEEECCCCCC
Q ss_conf             2778876588885
Q gi|254781140|r    7 SWKLISYDPETGR   19 (44)
Q Consensus         7 swklisydpetgr   19 (44)
                      .|--+||||+||-
T Consensus        34 NW~~~AyDP~Tgl   46 (160)
T 1kb0_A           34 NWHPMSFNPQTGL   46 (160)
T ss_dssp             CSSCCEEETTTTE
T ss_pred             CCCCCCCCCCCCE
T ss_conf             7777637677886


No 12 
>>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} (A:21-38,A:393-529)
Probab=24.93  E-value=50  Score=16.58  Aligned_cols=17  Identities=35%  Similarity=0.655  Sum_probs=8.9

Q ss_pred             EEEEEECCCCCCEEEEE
Q ss_conf             77887658888589999
Q gi|254781140|r    8 WKLISYDPETGRTVWYM   24 (44)
Q Consensus         8 wklisydpetgrtvwym   24 (44)
                      -.|+.+||.||+.+|..
T Consensus        92 G~l~A~D~~tgk~~W~~  108 (155)
T 1flg_A           92 GSLRAMDPVSGKVVWEH  108 (155)
T ss_dssp             EEEEEECTTTCCEEEEE
T ss_pred             EEEEEECCCCCCEEEEC
T ss_conf             59999917889787105


No 13 
>>2q4a_A Clavaminate synthase-like protein AT3G21360; ensemble refinement, refinement methodology development, structural genomics; 2.39A {Arabidopsis thaliana} (A:153-173,A:234-297)
Probab=22.55  E-value=23  Score=18.48  Aligned_cols=13  Identities=46%  Similarity=1.127  Sum_probs=11.3

Q ss_pred             EEECCCCCCEEEE
Q ss_conf             8765888858999
Q gi|254781140|r   11 ISYDPETGRTVWY   23 (44)
Q Consensus        11 isydpetgrtvwy   23 (44)
                      |...|.||+.||+
T Consensus        24 v~~HP~TGe~VWF   36 (85)
T 2q4a_A           24 IKYDESRNRKVWF   36 (85)
T ss_dssp             SEEETTTTEEECC
T ss_pred             EEECCCCCCCEEE
T ss_conf             8978986533254


No 14 
>>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} (A:207-300)
Probab=21.88  E-value=70  Score=15.76  Aligned_cols=20  Identities=30%  Similarity=0.730  Sum_probs=11.1

Q ss_pred             CEEEEEECCCCCCEEEEEECC
Q ss_conf             277887658888589999708
Q gi|254781140|r    7 SWKLISYDPETGRTVWYMLDN   27 (44)
Q Consensus         7 swklisydpetgrtvwymldn   27 (44)
                      .|--+|||||+|. |.+-.-|
T Consensus        30 ~W~~~s~D~~~~l-vy~~tGn   49 (94)
T 1yiq_A           30 AWDSFAYDPELNL-LYIGVGN   49 (94)
T ss_dssp             CCSCEEEETTTTE-EEEECCC
T ss_pred             CCCCCCCCCCCCC-EEECCCC
T ss_conf             2344421203585-1323556


No 15 
>>1mby_A SAK, serine/threonine kinase; POLO domain, strand exchange, transferase; 2.00A {Mus musculus} (A:)
Probab=21.50  E-value=53  Score=16.43  Aligned_cols=40  Identities=28%  Similarity=0.415  Sum_probs=29.4

Q ss_pred             EECCCEEE-------EEECCCCCCEEEEE-ECCCCHHHHHHHHCCCCC
Q ss_conf             01572778-------87658888589999-708410222321004454
Q gi|254781140|r    3 IYDGSWKL-------ISYDPETGRTVWYM-LDNQKRCVSDRLSCIPSY   42 (44)
Q Consensus         3 iydgswkl-------isydpetgrtvwym-ldnqkrcvsdrlscipsy   42 (44)
                      .+|||--+       |.|.+-.|.+.-|- -|+--.-|-+||+|+|+.
T Consensus        29 f~DGSql~~~~~~~~I~Yt~~~G~~t~y~~~d~LP~~vreKL~~lp~i   76 (88)
T 1mby_A           29 FNDGSQLVMQAGVSSISYTSPDGQTTRYGENEKLPEYIKQKLQLLSSI   76 (88)
T ss_dssp             ETTSCEEEEEEEEEEEEEECTTSCEEEEETTSCCCHHHHHHHTTTCCE
T ss_pred             ECCCCEEEEEECCCEEEEECCCCCEEECCCCCCCCHHHHHHHHCCHHH
T ss_conf             758878999608865999889996066786454449999998513088


No 16 
>>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} (A:283-336)
Probab=20.68  E-value=61  Score=16.11  Aligned_cols=20  Identities=5%  Similarity=-0.016  Sum_probs=14.6

Q ss_pred             CCEEEEEECCCCCCEEEEEE
Q ss_conf             72778876588885899997
Q gi|254781140|r    6 GSWKLISYDPETGRTVWYML   25 (44)
Q Consensus         6 gswklisydpetgrtvwyml   25 (44)
                      -..+|+.+||.||++-=-+-
T Consensus        28 n~~~l~~~d~~tG~~~~l~~   47 (54)
T 2ecf_A           28 KKLDLVEVTLASNQQRVLAH   47 (54)
T ss_dssp             SEEEEEEEETTTCCEEEEEE
T ss_pred             CCCCEEEECCCCCCEEEEEE
T ss_conf             10010464044474234430


No 17 
>>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoreductase; HET: PQQ; 1.50A {Methylophilus methylotrophus W3A1} (A:214-297)
Probab=20.23  E-value=71  Score=15.72  Aligned_cols=20  Identities=30%  Similarity=0.703  Sum_probs=10.8

Q ss_pred             CEEEEEECCCCCCEEEEEECC
Q ss_conf             277887658888589999708
Q gi|254781140|r    7 SWKLISYDPETGRTVWYMLDN   27 (44)
Q Consensus         7 swklisydpetgrtvwymldn   27 (44)
                      .|--+|||||+|. |..-..|
T Consensus        23 ~W~~~s~D~~~~l-vy~~tGN   42 (84)
T 2ad6_A           23 NWGWYAYDPKLNL-FYYGSGN   42 (84)
T ss_dssp             CCSCCEEETTTTE-EEEECCC
T ss_pred             CCCCCCCCHHHCE-EEEECCC
T ss_conf             1146213542085-5553134


No 18 
>>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} (A:234-313)
Probab=20.22  E-value=77  Score=15.52  Aligned_cols=20  Identities=20%  Similarity=0.526  Sum_probs=10.1

Q ss_pred             CEEEEEECCCCCCEEEEEECC
Q ss_conf             277887658888589999708
Q gi|254781140|r    7 SWKLISYDPETGRTVWYMLDN   27 (44)
Q Consensus         7 swklisydpetgrtvwymldn   27 (44)
                      .|--.|||||+|. |.+-..|
T Consensus        11 ~W~~~s~D~~~~l-vy~~tGn   30 (80)
T 1kb0_A           11 MWDSMTFDAELNT-MYVGTGN   30 (80)
T ss_dssp             CCSCEEEETTTTE-EEEECCC
T ss_pred             CCCCEEECCCCCE-EEECCCC
T ss_conf             3243017423481-7743688


No 19 
>>3c5b_A Putative uncharacterized protein; capsid protein, HK97 fold, icosahedral virus; 4.50A {Enterobacteria phage EPSILON15} (A:254-335)
Probab=20.15  E-value=45  Score=16.81  Aligned_cols=10  Identities=30%  Similarity=0.471  Sum_probs=8.2

Q ss_pred             CCCCEEEEEE
Q ss_conf             8885899997
Q gi|254781140|r   16 ETGRTVWYML   25 (44)
Q Consensus        16 etgrtvwyml   25 (44)
                      --||+||||-
T Consensus        21 ~~gr~v~Y~N   30 (82)
T 3c5b_A           21 GDGKEVIYAN   30 (82)
T ss_pred             CCCCEEEEEC
T ss_conf             7886799978


Done!