BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254781140|ref|YP_003065553.1| hypothetical protein
CLIBASIA_05210 [Candidatus Liberibacter asiaticus str. psy62]
         (44 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|254781140|ref|YP_003065553.1| hypothetical protein CLIBASIA_05210 [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|254040817|gb|ACT57613.1| hypothetical protein CLIBASIA_05210 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 44

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/44 (100%), Positives = 44/44 (100%)

Query: 1  MDIYDGSWKLISYDPETGRTVWYMLDNQKRCVSDRLSCIPSYGD 44
          MDIYDGSWKLISYDPETGRTVWYMLDNQKRCVSDRLSCIPSYGD
Sbjct: 1  MDIYDGSWKLISYDPETGRTVWYMLDNQKRCVSDRLSCIPSYGD 44


>gi|315122532|ref|YP_004063021.1| hypothetical protein CKC_03920 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
 gi|313495934|gb|ADR52533.1| hypothetical protein CKC_03920 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
          Length = 118

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 25/29 (86%), Positives = 28/29 (96%)

Query: 1  MDIYDGSWKLISYDPETGRTVWYMLDNQK 29
          MDIYDGSWKLISYDPETGRT+WY+ DNQ+
Sbjct: 13 MDIYDGSWKLISYDPETGRTIWYLSDNQR 41


>gi|150397026|ref|YP_001327493.1| hypothetical protein Smed_1823 [Sinorhizobium medicae WSM419]
 gi|150028541|gb|ABR60658.1| hypothetical protein Smed_1823 [Sinorhizobium medicae WSM419]
          Length = 107

 Score = 39.2 bits (90), Expect = 0.21,   Method: Composition-based stats.
 Identities = 16/29 (55%), Positives = 19/29 (65%)

Query: 1  MDIYDGSWKLISYDPETGRTVWYMLDNQK 29
          M I DGSW L  YD  TGR+VW+  D +K
Sbjct: 1  MIIRDGSWSLYDYDQMTGRSVWHYFDGEK 29


>gi|227822440|ref|YP_002826412.1| hypothetical protein NGR_c18950 [Sinorhizobium fredii NGR234]
 gi|227341441|gb|ACP25659.1| hypothetical protein NGR_c18950 [Sinorhizobium fredii NGR234]
          Length = 107

 Score = 36.5 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/29 (51%), Positives = 18/29 (62%)

Query: 1  MDIYDGSWKLISYDPETGRTVWYMLDNQK 29
          M + DG WKL  YD  TGR+VW M D  +
Sbjct: 1  MIVRDGEWKLFDYDFLTGRSVWVMEDGNR 29


>gi|256371680|ref|YP_003109504.1| extracellular solute-binding protein family 5 [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256008264|gb|ACU53831.1| extracellular solute-binding protein family 5 [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 610

 Score = 36.1 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/20 (70%), Positives = 16/20 (80%)

Query: 3   IYDGSWKLISYDPETGRTVW 22
           + DG WKL SYDP TGRTV+
Sbjct: 248 VVDGPWKLQSYDPTTGRTVF 267


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.320    0.139    0.473 

Lambda     K      H
   0.267   0.0428    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 506,345,765
Number of Sequences: 14124377
Number of extensions: 13331475
Number of successful extensions: 28963
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 28958
Number of HSP's gapped (non-prelim): 5
length of query: 44
length of database: 4,842,793,630
effective HSP length: 18
effective length of query: 26
effective length of database: 4,588,554,844
effective search space: 119302425944
effective search space used: 119302425944
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 76 (33.8 bits)