RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254781140|ref|YP_003065553.1| hypothetical protein
CLIBASIA_05210 [Candidatus Liberibacter asiaticus str. psy62]
         (44 letters)



>gnl|CDD|184111 PRK13524, PRK13524, outer membrane receptor FepA; Provisional.
          Length = 744

 Score = 27.7 bits (62), Expect = 0.73
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 23  YMLDNQKRCVSDRLSCIPSY 42
           YML ++ +   D LS IP Y
Sbjct: 611 YMLQSKNKTTGDPLSIIPEY 630


>gnl|CDD|184940 PRK14977, PRK14977, bifunctional DNA-directed RNA polymerase A'/A''
           subunit; Provisional.
          Length = 1321

 Score = 27.7 bits (61), Expect = 0.75
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 3   IYDGSWKLISYDPETGRTVWYML 25
           I D   +LI +DP+  R  W +L
Sbjct: 198 IIDDDLELIGFDPKKARPEWAVL 220


>gnl|CDD|163208 TIGR03300, assembly_YfgL, outer membrane assembly lipoprotein
          YfgL.  Members of this protein family are YfgL, a
          lipoprotein component of a complex that acts protein
          insertion into the bacterial outer membrane. Other
          members of this complex are NlpB, YfiO, and YaeT. This
          protein contains multiple copies of a repeat that, in
          other contexts, are associated with binding of the
          coenzyme PQQ.
          Length = 377

 Score = 25.3 bits (56), Expect = 4.0
 Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 6/33 (18%)

Query: 5  DGSWKLISYDPETGRTVWYMLDNQKRCVSDRLS 37
          D    +++ D ETG+ +W      +  + +RLS
Sbjct: 72 DADGTVVALDAETGKRLW------RVDLDERLS 98


>gnl|CDD|149339 pfam08223, PaaX_C, PaaX-like protein C-terminal domain.  This
          family contains proteins that are similar to the
          product of the paaX gene of Escherichia coli. This
          protein is involved in the regulation of expression of
          a group of proteins known to participate in the
          metabolism of phenylacetic acid.
          Length = 170

 Score = 24.9 bits (55), Expect = 5.0
 Identities = 8/18 (44%), Positives = 10/18 (55%)

Query: 5  DGSWKLISYDPETGRTVW 22
          DGSW L+   PE+ R   
Sbjct: 5  DGSWHLVVLSPESDRAAR 22


>gnl|CDD|162204 TIGR01107, Na_K_ATPase_bet, Sodium Potassium ATPase beta subunit.
           This model describes the Na+/K+ ATPase beta subunit in
          eukaryotes. Na+/K+ ATPase(also called Sodium-Potassium
          pump) is intimately associated with the plasma
          membrane. It couples the energy released by the
          hydrolysis of ATP to extrude 3 Na+ ions, with the
          concomitant uptake of 2K+ ions, against their ionic
          gradients.
          Length = 289

 Score = 24.2 bits (53), Expect = 8.2
 Identities = 9/20 (45%), Positives = 11/20 (55%), Gaps = 4/20 (20%)

Query: 5  DGSWKLISYDPET----GRT 20
           G WK   ++PET    GRT
Sbjct: 13 MGEWKKFIWNPETKEFLGRT 32


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.320    0.139    0.473 

Gapped
Lambda     K      H
   0.267   0.0590    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 739,520
Number of extensions: 26078
Number of successful extensions: 90
Number of sequences better than 10.0: 1
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 12
Length of query: 44
Length of database: 5,994,473
Length adjustment: 17
Effective length of query: 27
Effective length of database: 5,627,137
Effective search space: 151932699
Effective search space used: 151932699
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.3 bits)